EsuBft3747_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3747_2a-0001
Unique NameEsuBft3747_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:124381..127581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV2
ProteomeIdEsuBft3747_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length163
Hectar predicted targeting categoryother localisation
Evalue9.69e-77
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3747_2aEsuBft3747_2aEctocarpus subulatus male Bft15bgeneScaffold_54 124381..127581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3747_2a-0001EsuBft3747_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 124381..127227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3747_2a-0001-exonagat-exon-65195Ectocarpus subulatus male Bft15bexonScaffold_54 124381..124607 -
EsuBft3747_2a-0001-exonEsuBft3747_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 124944..125001 -
EsuBft3747_2a-0001-exonagat-exon-65191Ectocarpus subulatus male Bft15bexonScaffold_54 125228..125632 -
EsuBft3747_2a-0001-exonagat-exon-65193Ectocarpus subulatus male Bft15bexonScaffold_54 125831..126068 -
EsuBft3747_2a-0001-exonagat-exon-65192Ectocarpus subulatus male Bft15bexonScaffold_54 126228..126321 -
EsuBft3747_2a-0001-exonagat-exon-65194Ectocarpus subulatus male Bft15bexonScaffold_54 126969..127581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3747_2a-0001-cdsEsuBft3747_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 124381..124607 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3747_2a-0001-exonagat-five_prime_utr-9090Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 127228..127581 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGCAGCAGCAGTGGCGGCGGTACCCGTCCCCCACCCTCCCAGCAAAGG
CAAGGGTAAAGCCCTTGCTCATGAAGCCTCCCAAGCACGCGGGGGGGCAG
CTCCAGCAGTGCTATCCTCTCAAATAGGTGAGGGGTCAGTACCAGCATCA
ACAGCACCGGCAATATCAGCGGCACCAGAGGCCGCAACAGGGGCAGCAAC
ACCGGCACAACTCGCAGCAGCAGCAGCGGAAGTAGCCGCCGCCGCGGGGG
CGGCAGCGGCGAGACCAGCAGCAAGCGGAGGTCACGACCGCGGAGCGCGC
CAACAAGGACGAGAAGGGGGGCTGAGCGGCCGTGAAGGAGGCAGAGGAGG
GGGGATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAG
CGCCAGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGG
GCCGGCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGT
GAAGGACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAG
GCCGGTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTT
CAGCCATCACCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCC
TAAGGGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGG
AATTTCGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAG
GAGGCGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCT
CCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTCTCACCA
AGCGATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGATGATTTG
GTGCATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCAGGCGCA
TACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACA
CCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAACACT
CCGGAGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTGCGGT
CCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCGAAAC
TCCCCGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTATCAG
CACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACGCTTC
GTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAGGAGC
GCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGAGCAG
CTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTG
GAACACAGATGACTGCTGTGATGACCGTCAACTGCTGCAACGCATATTTC
GCGAGTTTGAGGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTG
GACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATCTGGAGTTCAC
CCCTGCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCTGCGGCTCCT
TTGTTTGCGGCCTACGCCACTTATTTATCCGGTGA
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protein sequence of EsuBft3747_2a-0001

>EsuBft3747_2 ID=EsuBft3747_2|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=426bp
MSGRGGGGGGGHGAAAPGRGAGGGAGGAAGGGAGDTSTSSAQERFFQEVK
DKIDRSITLEEGGVKGRFPFDNPLVRPKCATFQPSPGCGGKGAPDGWNPK
GPRRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLR
RLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHT
TKFMVDQLKYTSLVNTRRTSSGIFRSANLANTPERFGSFDDSTKYGGAVP
SEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASF
KFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQLFFMRFVRNGFKVPTLWN
TDDCCDDRQLLQRIFREFEEVTGISLYLEDEVDAGVQLELLPQLDLEFTP
AIVYDPEAVAAACGSFVCGLRHLFIR
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mRNA from alignment at Scaffold_54:124381..127581-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3201bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)
ACAGCAGCAGCAGTGGCGGCGGTACCCGTCCCCCACCCTCCCAGCAAAGG
CAAGGGTAAAGCCCTTGCTCATGAAGCCTCCCAAGCACGCGGGGGGGCAG
CTCCAGCAGTGCTATCCTCTCAAATAGGTGAGGGGTCAGTACCAGCATCA
ACAGCACCGGCAATATCAGCGGCACCAGAGGCCGCAACAGGGGCAGCAAC
ACCGGCACAACTCGCAGCAGCAGCAGCGGAAGTAGCCGCCGCCGCGGGGG
CGGCAGCGGCGAGACCAGCAGCAAGCGGAGGTCACGACCGCGGAGCGCGC
CAACAAGGACGAGAAGGGGGGCTGAGCGGCCGTGAAGGAGGCAGAGGAGG
GGGGATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAG
CGCCAGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGG
GCCGGCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGT
GAAGGACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAG
GCCGGTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTT
CAGCCATCACCAGGTACGCCAGAGCAGTTGTTTTTTTTTGGGGGGGGGGT
AGATAGCTGCCTATCTGTCTTTCTTTTCAGAATAAATCGTCCAGGGAAAT
TACATCCCATCCCCCGGGGGGCTATTTTTTTTGTCTCGCGTGCCTGATGT
ACTGACATACAGTAGGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAG
CAAAGCGGCACTATACCGGGCACCGGCACTATTCAGAGTACAGAAAGACT
TGATATTCCGGTGTGTGCGAGTCGAAAACACCGGCAATATGCCGGCAACC
GGCACTATTCAACCGGCACTATATCGGGCCACCCACTGTATCTACCTCAC
ATTTACGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAGGC
GGTACTGGTATGGATACCGGAANACCGGCACTATTCAGAGTACAGAAAGA
CTTGATATTCCGGTGTGTGCGAGTCGAAAACACCGGCAATATGCCGGCAA
CCGGCACTATTCAACCGGCACTATATCGGGCCACCCACTGTATCTACCTC
ACATTTACGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAG
GCGGTACTGGTATGGATACCGGAATCTTGTTCCCAGAGCTCCAGGCAGTT
CCTTGTCCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCCTAA
GGGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGGAAT
TTCGGTAAGTTCAGCATGCGACGAAGAGTGTTCGCTCCATAAACTTCATC
AGTCATGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGA
GTTCGTGTTGTGGTTTTCCGACGATATTGCTCGTGGTGTATGTTTTCTCC
CATGCACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGC
AAGCAGGAGGCGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGG
GTGCCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTC
TCACCAAGCGATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGAT
GATTTGGTGCATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCA
GGTGAATATGCAGTGTTTCATCTGCAGCGCCTTAAGATAACGAGTTGGTC
TGGTCTTGANTTGGTCTGATCTTGGCTTTCCTAGCCTGTTCAAAACATTT
GCGGATGGTACCGCAAACGTTGCTGCGGGAAATGTCGGATCTCATAAGCG
CCGACCCGTGCTACAACGAAAACGTGTCGCCCTCGCAATGCTGTTGTAGG
CGCATACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTC
AACACCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAA
CACTCCGGAGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTG
CGGTCCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCG
AAACTCCCCGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTA
TCAGCACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACG
CTTCGTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAG
GAGCGCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGA
GCAGGTGAAAATTTCTCTTGTCTCTGTTTCGTTCAACCATCCCCAAACCC
TTTGTGTTGGTGCCATGTTTTCTGGAGCAATCACTGGAACATTATTCTCG
TAGTATGTGTGCGCTCATTCTGATGACCCAAAAAACATTTCGTTGTTACG
CATGTGTGTTCTTATTTGAAGGTGGTCTGGCAGCGTCCGATGAAGACCGG
TGCCTTGAGCGAGCTGGCGGGGAGTTGAAGCTTTTTTTCATGCGATTCGT
TCGCAATGGCTTCAAGGTTCCTACTCTGTGGAACACAGGTAATTTGCGAA
ATGATTGTAGACTTGCTTCGCTTTTCGAGGTTGTAGACCGGTGTCAGGCC
TGCTATTTTCGCAGTGACTTGCAGTATTGTCTCCTCAATCCTTTCCGGCC
CCGTTGCGTGACGCTTCACTTTGTCAGATGACTGCTGTGATGACCGTCAA
CTGCTGCAACGCATATTTCGCGAGTTTGAGGAGGTAACGGGGATAAGCNA
TTGTAGACTTGCTTCGCTTTTCGAGGTTGTAGACCGGTGTCAGGCCTGCT
ATTTTCGCAATGACTTTGCAGCATTGTCTCCTCAATCCTTTCCGGCCCCG
TTGCGTGACGCTTCACTTTGTCAGATGACTGCTGTGATGACCGTCAACTG
CTGCAACGCATATTTCGCGAGTTTGAGGAGGTAACGGGGATCAGTCTTTA
TCTGGAAGACGAGGTGGACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGC
TGGATCTGGAGTTCACCCCTGCCATCGTGTACGACCCGGAGGCGGTAGCC
GCTGCCTGCGGCTCCTTTGTTTGCGGCCTACGCCACTTATTTATCCGGTG
A
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Coding sequence (CDS) from alignment at Scaffold_54:124381..127581-

>EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1281bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)
ATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAGCGCC
AGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGGGCCG
GCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGTGAAG
GACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAGGCCG
GTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTTCAGC
CATCACCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCCTAAG
GGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGGAATT
TCGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGGAGG
CGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCTCCGG
CGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTCTCACCAAGCG
ATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGATGATTTGGTGC
ATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCAGGCGCATACG
ACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACACCCG
GCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAACACTCCGG
AGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTGCGGTCCCG
TCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCGAAACTCCC
CGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTATCAGCACC
GCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACGCTTCGTTT
AAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAGGAGCGCAC
AAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGAGCAGCTTT
TTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTGGAAC
ACAGATGACTGCTGTGATGACCGTCAACTGCTGCAACGCATATTTCGCGA
GTTTGAGGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTGGACG
CCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATCTGGAGTTCACCCCT
GCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCTGCGGCTCCTTTGT
TTGCGGCCTACGCCACTTATTTATCCGGTGA
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