EsuBft3717_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3717_2a-0001
Unique NameEsuBft3717_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:299341..303516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft3717_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR006912
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length137
Hectar predicted targeting categorysignal peptide
Evalue4.31e-70
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3717_2aEsuBft3717_2aEctocarpus subulatus male Bft15bgeneScaffold_195 299341..303516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3717_2a-0001EsuBft3717_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 299341..303516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3717_2a-0001-exonEsuBft3717_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 299341..299468 -
EsuBft3717_2a-0001-exonagat-exon-16863Ectocarpus subulatus male Bft15bexonScaffold_195 299515..299824 -
EsuBft3717_2a-0001-exonagat-exon-16864Ectocarpus subulatus male Bft15bexonScaffold_195 300303..300674 -
EsuBft3717_2a-0001-exonagat-exon-16866Ectocarpus subulatus male Bft15bexonScaffold_195 300756..300836 -
EsuBft3717_2a-0001-exonagat-exon-16865Ectocarpus subulatus male Bft15bexonScaffold_195 303034..303516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3717_2a-0001-cdsEsuBft3717_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 299341..299468 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3717_2a-0001 ID=EsuBft3717_2a-0001|Name=EsuBft3717_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1374bp|location=Sequence derived from alignment at Scaffold_195:299341..303516- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGCCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGGTCCAACGCAACGACTTGTCGCAAAA
AGACCTCTTAGAGGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCGAAAC
TTAACAGAGGACAGCGAAAGAGGAAAGACGTGGAAAAATGCGCTTGGGCA
CAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCATAACCTCCAA
GCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTTCTGCGGCTCG
GGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCA
GCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTACTGGCCTGGCTGAC
CATACTCGGCAGGGGCAACTGCTTTGCAAGCATCTACCAGATGTCGTGGA
TGAGCGCGAAGACCAACGACGAGCTGGACCACGTCATGGAGCAGTACGAC
CGGCTTGGGTTTTCGGGCTCGATGGGCTCCATGGATGTAACTCATATCGG
TTGGAGTAAGTGCCCCTACAACCTAGCCCGTTCCTACACAGGCAAAGAGG
GGGTTCCTGCGATCGGGTACCAGGTCATGGTTAGTCACGCTGGCCGTGCA
ATTGCCGTGACCGAGGGCTTCACCTGCTCGACGAACGACAAGACCATCGT
CTGCTGGGATGCCGCGGTCGAGAAGATTCGGACGGACAAGCAGTACACGG
AGAAGACCTTCGACGTGTACAACGAGGATGGGACGACGACAACGCTCAAG
GGGTGCTACTTGCTAGTCGACAACGGGTACCACAAGCTTGTTAACAGCGT
CGAATCGAAACGTCCCTCCCTCGGCCCTTCTCCCTTCCCCTTGTCGTTTT
TTTTTCCAGTGGAATATCCTGATGGAACCCACCAAGTACCCGCTGAGCGA
GAACGACATTCTCTTTTCGAAGGGGCGGGCGAGCGTGCGCAAGGACGTGG
AGTGCTTCTTCGGCATCCTGAAGGGTCGCTTCAGGATCCTGAAGCTCGCC
ATGGCGTACCACGAGTAGGAGCGCATCGACAACGTGTTTTTCGCGAGCTG
CATCTTGCACAACATGCTGCACACCTTCGACGGAATGGACCAGCTGGGTC
GCTTCAGGATCCTGAAGCTCGCCATGGCGTACCACGAGTAGGAGCGCATC
GACAACGTGTTTTTCGCGAGCTGCATCTTGCACAACATGCTGCACACCTT
CGACGGAATGGACCAGCTGGTTGA
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protein sequence of EsuBft3717_2a-0001

>EsuBft3717_2 ID=EsuBft3717_2|Name=EsuBft3717_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=457bp
MWNWLPSLALLAGAGSATRLTPPYISSLGSLPMAETGVGDALLPATALLA
VTLAALDKVQRNDLSQKDLLEEEDRAPDLPRPKLNRGQRKRKDVEKCAWA
QMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDA
AGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTNDELDHVMEQYD
RLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRA
IAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLK
GCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAER
ERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFREL
HLAQHAAHLRRNGPAGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHL
RRNGPAG
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mRNA from alignment at Scaffold_195:299341..303516-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3717_2a-0001 ID=EsuBft3717_2a-0001|Name=EsuBft3717_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4176bp|location=Sequence derived from alignment at Scaffold_195:299341..303516- (Ectocarpus subulatus male Bft15b)
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGCCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGGTCCAACGCAACGACTTGTCGCAAAA
AGACCTCTTAGAGGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCGAAAC
TTAACAGAGGACAGCGAAAGAGGAAAGACGTGGAAAAATGCGCTTGGGCA
CAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCATAACCTCCAA
GCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTTCTGCGGCTCG
GGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCA
GCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTAGGCTGACGGCATAA
TTGGTTCGTACGAGTGCAGACTCTGACCTATAACCAAGAAGGGGAGCTGC
TGTGGTGTAGAGTTGAACATATGTAGCGGAGGGACAACTGCTGTAGTCGA
GACCACATTTCTATTCCTCCTGTTGCCAGCTGCATGCCGTCTCTGGGGCA
TGCCCGACACGACGCGCTTGGTGACCGCTGGCCGTGTTCGCACAGTCGGG
CTCAAACATGTTACTCAAATCGTACAGCAGTACAGATGCTCTGTCCACAA
CCAACAAGGAGGGGACTGCTGCTGCTGCTGTTGTGTAGAGTGCATGAGGC
GGAGGAACCAGGCGCATTTTGTATTTGTGTACGCAGCTGCATGCCGTCTC
CTGGGCATGTCGTTGACGAGACGCGGTTGGTGACCACCGGTCGTGCTCTC
CAACCCTCGAAAAAAAGTGCACCCGGCCGCTCTGCTGTCGTGCACATCAG
CATATGTTCACCGGACAGTGTTTCGTCGGTGTTGTCTGTAGGTACAGCTG
TTTAATGTACAACATATCCACTGAGTTAAGCAGTCAGTGCTCAGTGGATA
TGTTGCATATCTAACAGGGAATACAACCCTGGGGGAAAGCCAGAGTCCGC
TGACTGTTTAGCTCAGTGGATATGTTGTACAATTAACAAAAGTACAACCA
GGGTCAGAACAGCTGTTAGGCTGTCTGACTCTGGTTTTCCCCCAGGGTTG
TAATCCCTTTAATCAGCGCTTCCCCAAGCGGTTCATCGGCTTACAGGCGG
GGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCGCGTATTTGTCTACG
ATGCTGAGCTGTCCGCCCGCTCGTATCCGGGGGGGTATGTGGGCACCACA
TGTCAGTACATAAGGCTTGGGGCACCTTATCTCGTGTCGGGCAAAAACCC
TTTTTTTACTGTTGCCAGCTGCATGCCGTTTCTGGGGCATGCCCGACACG
ACTCGCTTGGTGACCGCTGGCCGTGTTCGCACAGTCGGGCTCAAACATGT
TACTCAAATCGTACAGCAGTACAGATGCTCTGTCCACAACCAACAAGGAG
GGGACTGCTGCTGCTGCTGTTGTGGTAGCGTGCATTAGGCGGAGGAACCA
GGCGCATATTGTATTTGTGCATGCAACTGCATGCCGTCTCCTGGGCATGT
CGTTGACGAGACGCGGTTGGTGACCACCGGCCGTGCTCTCCAACCCTCGA
ACAAAGTGCACCCGGGCGCTCTGCTGTCGTGCACAACAGCGTATGTTCAC
CGGACAGTGTTTCGTCGGTGTTGTCTGTAGGTACAGCATGATACACTTTT
GGTTCAACTGCTGCTTTGTACAACTGCAGCACCACCGTTGTGACGCCACA
TCGGGTTGAACTGGCGTCCGAGATAACGCAGGAGAAGAGCGCTGCAGTCG
GCGCGACATCGCAAAGCTAAACTGGCAGTCGTTATGTTGGCTAGCGTACG
GCGCAATGCTCAGTCCTCCCGCCCGTGAGATGCTTCCACACGACGTTCGG
TACACGCAACCACATCACATCACTAATAATGACACCGCGATATCCCGTGT
GCACATTCCTTGTTGCACTTGCTGGTGCAGGTACTGGCCTGGCTGACCAT
ACTCGGCAGGGGCAACTGCTTTGCAAGCATCTACCAGATGTCGTGGATGA
GCGCGAAGACCGTGTAGACGATGTTCCACAAGTTCTGCAAACACTTCGCA
CGGGAAATGTACGATGAACACATCTAGCTCGCGTCGGAACAGAACGACGA
GCTGGACCACGTCATGGAGCAGTACGACCGGCTTGGGTTTTCGGGCTCGA
TGGGCTCCATGGATGTAACTCATATCGGTTGGAGTAAGTGCCCCTACAAC
CTAGCCCGTTCCTACACAGGCAAAGAGGGGGTTCCTGCGATCGGGTACCA
GGTCATGGTTAGTCACGCTGGCCGTGCAATTGCCGTGACCGAGGGCTTCA
CCTGCTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTCGAG
AAGATTCGGACGGACAAGCAGTACACGGAGAAGACCTTCGACGTGTACAA
CGAGGATGGGACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACA
ACGGGTACCACAAGGTGGATGGAAATGACATGTTGTGATTTTGGGTGACC
GACGGTAGTGTTTTTGAAGAGGTGTGTGTCCGGCCTGACAGAAAGAGANN
NNNNNNNNNNNNAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
AGAGAGAGAGGGAGCTGCCCAGTGAGGTATTTGTTGTCTCGGCAAATCAG
AACCTCGGTTGCCCGCTCTTAAAAATGGCATGAGGTGTGTCATGGCTTTA
GGTTATTTGATCGGTATTTCCATTGCACGCCCCTTCGACCTCGAAGACCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTATTTCACAGCTTGTTAA
CAGCGTCGAATCGAAACGTCCCTCCCTCGGCCCTTCTCCCTTCCCCTTGT
CGTTTTTTTTTCCAGTGGAATATCCTGATGGAACCCACCAAGTACCCGCT
GAGCGAGAACGACATTCTCTTTTCGAAGGGGCGGGCGAGCGTGCGCAAGG
ACGTGGAGTGCTTCTTCGGCATCCTGAAGGGTCGCTTCAGGATCCTGAAG
CTCGCCATGGCGTACCACGAGTAGGAGCGCATCGACAACGTGTTTTTCGC
GAGCTGCATCTTGCACAACATGCTGCACACCTTCGACGGAATGGACCAGC
TGGTTGAGAACACGCACTGGGTCAGCAGTACCGGGGCGCNTCCTGAAGGG
TCGCTTCAGGATCCTGAAGCTCGCCATGGCGTACCACGAGTAGGAGCGCA
TCGACAACGTGTTTTTCGCGAGCTGCATCTTGCACAACATGCTGCACACC
TTCGACGGAATGGACCAGCTGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_195:299341..303516-

>EsuBft3717_2a-0001 ID=EsuBft3717_2a-0001|Name=EsuBft3717_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1374bp|location=Sequence derived from alignment at Scaffold_195:299341..303516- (Ectocarpus subulatus male Bft15b)
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGCCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGGTCCAACGCAACGACTTGTCGCAAAA
AGACCTCTTAGAGGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCGAAAC
TTAACAGAGGACAGCGAAAGAGGAAAGACGTGGAAAAATGCGCTTGGGCA
CAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCATAACCTCCAA
GCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTTCTGCGGCTCG
GGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCA
GCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTACTGGCCTGGCTGAC
CATACTCGGCAGGGGCAACTGCTTTGCAAGCATCTACCAGATGTCGTGGA
TGAGCGCGAAGACCAACGACGAGCTGGACCACGTCATGGAGCAGTACGAC
CGGCTTGGGTTTTCGGGCTCGATGGGCTCCATGGATGTAACTCATATCGG
TTGGAGTAAGTGCCCCTACAACCTAGCCCGTTCCTACACAGGCAAAGAGG
GGGTTCCTGCGATCGGGTACCAGGTCATGGTTAGTCACGCTGGCCGTGCA
ATTGCCGTGACCGAGGGCTTCACCTGCTCGACGAACGACAAGACCATCGT
CTGCTGGGATGCCGCGGTCGAGAAGATTCGGACGGACAAGCAGTACACGG
AGAAGACCTTCGACGTGTACAACGAGGATGGGACGACGACAACGCTCAAG
GGGTGCTACTTGCTAGTCGACAACGGGTACCACAAGCTTGTTAACAGCGT
CGAATCGAAACGTCCCTCCCTCGGCCCTTCTCCCTTCCCCTTGTCGTTTT
TTTTTCCAGTGGAATATCCTGATGGAACCCACCAAGTACCCGCTGAGCGA
GAACGACATTCTCTTTTCGAAGGGGCGGGCGAGCGTGCGCAAGGACGTGG
AGTGCTTCTTCGGCATCCTGAAGGGTCGCTTCAGGATCCTGAAGCTCGCC
ATGGCGTACCACGAGTAGGAGCGCATCGACAACGTGTTTTTCGCGAGCTG
CATCTTGCACAACATGCTGCACACCTTCGACGGAATGGACCAGCTGGGTC
GCTTCAGGATCCTGAAGCTCGCCATGGCGTACCACGAGTAGGAGCGCATC
GACAACGTGTTTTTCGCGAGCTGCATCTTGCACAACATGCTGCACACCTT
CGACGGAATGGACCAGCTGGTTGA
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