EsuBft368_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft368_9a-0001
Unique NameEsuBft368_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:88857..91176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G566
ProteomeIdEsuBft368_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length62
Hectar predicted targeting categoryother localisation
Evalue9.84e-64
EggNOG OGsKOG1818@1|root,KOG2088@1|root,KOG1818@2759|Eukaryota,KOG2088@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0019222,GO:0019538,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045732,GO:0048518,GO:0050789,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:1901564
Descriptionretrograde trans-synaptic signaling by lipid
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft368_9aEsuBft368_9aEctocarpus subulatus male Bft15bgeneScaffold_385 88857..91176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_9a-0001-exonagat-exon-101910Ectocarpus subulatus male Bft15bexonScaffold_385 88857..89079 -
EsuBft368_9a-0001-exonagat-exon-101909Ectocarpus subulatus male Bft15bexonScaffold_385 89521..89818 -
EsuBft368_9a-0001-exonEsuBft368_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 91077..91176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_9a-0001-cdsEsuBft368_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 88857..89079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_9a-0001EsuBft368_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 88857..91176 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft368_9a-0001 ID=EsuBft368_9a-0001|Name=EsuBft368_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=621bp|location=Sequence derived from alignment at Scaffold_385:88857..91176- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAGCTCAAATGGTGTATGCAGTGCGACGCTGGCGACGTTCCTGC
GCACGCTGCTCTTGCTTGTGCTTCCAGTAGTGCCTTCTCTCCTTCCAAAG
AAGAAGGCGCGGTTTTTATGGATTCGAATACCGGTCCTGTCGAAAATGAT
GCCAACACGGCGGTGGAATTGGAATCAACGCCAGACACAGAAGCCCTTAC
CACTGCTGATGGCGAGCTAGCGCAAGCAAGTGACGATGTCACGGCGTCGG
AAGCTGGGACTGGCCTTGAAAACGACGAGCAAGGGTCCGGGCGGCTGTCC
GTTCTGGTCCCCACGCTCGGGCACTTTGCGACACGCGCTCACAAGGCGTC
GCAGCCGTATTTGTCGTACGCGGCGATGGCCTCTCAGGAGGCGGCGAGGT
GTATGAGGTCCAGCTCTGGTACATGGCACAATCTCTTCTCAACCTTTACC
CCCCTTGAGGTACCTCCCTTGCCCCTGACCCTGTTGCAATCCTCTAGGTT
TACCGCCGGCCACGCCAAGCGTTACGTGGACAAGATGCGTTCGCAACACC
GTAGGGGGGAAGCCCCACCGGGGCAGGTGGACAATGCCAAGGTGGACTGG
TCGGGCGTGGGCGCTAGGTAA
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protein sequence of EsuBft368_9a-0001

>EsuBft368_9 ID=EsuBft368_9|Name=EsuBft368_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MVELKWCMQCDAGDVPAHAALACASSSAFSPSKEEGAVFMDSNTGPVEND
ANTAVELESTPDTEALTTADGELAQASDDVTASEAGTGLENDEQGSGRLS
VLVPTLGHFATRAHKASQPYLSYAAMASQEAARCMRSSSGTWHNLFSTFT
PLEVPPLPLTLLQSSRFTAGHAKRYVDKMRSQHRRGEAPPGQVDNAKVDW
SGVGAR
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mRNA from alignment at Scaffold_385:88857..91176-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft368_9a-0001 ID=EsuBft368_9a-0001|Name=EsuBft368_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2320bp|location=Sequence derived from alignment at Scaffold_385:88857..91176- (Ectocarpus subulatus male Bft15b)
ATGGTTGAGCTCAAATGGTGTATGCAGTGCGACGCTGGCGACGTTCCTGC
GCACGCTGCTCTTGCTTGTGCTTCCAGTAGTGCCTTCTCTCCTTCCAAAG
GTATGAACCCGCGCACCTATTACATGTCATAGGTGTGAGTGACGAGAGAG
AAAGAACAGAGAGTAACAGCATGTCGTCTGGACGTACCTTATGTCTCAAC
AACACCAGTTCAACAAGGTTTCGCCAAAAGGCGGTCGTTCTTCAACAACA
ACGCCGACAGCTTCGACTACTGCTGCTGCTCTAATCTGTTGTTCTATCTA
GTGGCAGACGGCGGAGTGGTAGTGTGAGGTAAGGTTGTGTCGGGCTGAAT
ATCAATCTCTTATTTAAGGCAAAACCTGGAGCTAGCTGGTGAGCACTCGC
TGCAAACAACTGTCATCCCCCCCATCATCACCCCCCCATACATATCAGAG
CTCATAAGGTACCATATGCTAGCGACAAGTAATTCAGTATGCGGAGGCCG
ATTAGCACGGCGAGAAGATAAGAGTATGACGTGAGTGGGACGAGGAAAGA
GGAAAACACTAAAATTAAATGCCATCATAATAGCGCCGCTCCTGCAGTAT
TCCCTTTGGTGGCATGCTGCAATCTTGTTTCTGATTTGTGCGTCGCAGTG
TCAGAAGCTGTGTCCGGTACGAGCGGTATTCAGAAGTTCGTCATGGTGGC
GAAGTCGGTGCACTGGTTCATGCGTGAGGGGTGCTTGTTCCCTGAGGTTA
ACGTCGATGGTTCACGGGGGGGGCGTCGCAATGGTCGGCAGGTCGCATGA
CTGCGGCCTTGCAAGCTCACATACTCAGATACGCGAAAGACATTTGACAT
TTGAGGGACGACGGCGGCCAGTATACTATTATATTAGGTATTGTAGACTA
CATTAAGCAGTGTTACCGGAGACCGCACGCAGTAGAAGCCCTCAGGGGTG
GGAAAATTCGAGAGATGGCGCAGCGGTATGTACTGCTGTAGGTCCGACAA
CACAAGCGGGGCGTTCCTCCGCTGAGCGACGGCGACAGCAGGCGACAAGA
GCATGAGCAGTTGTATATGGAGGCAGTCGACCTCCCGGTTCAAGAAGGCT
TCCCAGAGCGTTTTTCGGCATTTGGGTAACGAAGGTCAAACGTCGATCAT
AAGCATCAACTATGCATATGTATAGGGAATTACGAGATAAAAGTTAGCAA
TGACAGGGAAGATTAACATCGAAAGAATGAAGTGTACATATGGGTGGATC
CCGTGCCGTCACAGGAGGCCTCATTTCATCCCAAACTTTGCATCGTCGAC
AACTATTCCGCAGCAGCATCTACTTTCAACCTCTCCCACTTGCTCGCGCG
CGAAACAGAAGAAGGCGCGGTTTTTATGGATTCGAATACCGGTCCTGTCG
AAAATGATGCCAACACGGCGGTGGAATTGGAATCAACGCCAGACACAGAA
GCCCTTACCACTGCTGATGGCGAGCTAGCGCAAGCAAGTGACGATGTCAC
GGCGTCGGAAGCTGGGACTGGCCTTGAAAACGACGAGCAAGGGTCCGGGC
GGCTGTCCGTTCTGGTCCCCACGCTCGGGCACTTTGCGACACGCGCTCAC
AAGGCGTCGCAGCCGTATTTGTCGTACGCGGCGATGGCCTCTCAGGAGGC
GGCGAGGTGAGAGAGTAGGTGGCCGCGTGGATGAAAAGGCGAAAGAAACA
CCGTTGGCATGTTTTCTTGGGCAGCTGCTTGAGCTCTTCTACCAAGAGGT
GTCCGCTCAGCATTTCCGGGCGGGGTAAAACGGCGAAGCTGGCAGGGCGT
ACAGGAAGCAGTATCTTAGATGCCGAGGGCACGATGTGCGAAAGGATTTC
TGTGCCTGCATGAGATGACCGTCTGCGATAAAGTCAAATTCGATACAACA
GCCGTAAGGTGCGTCTGTCCCTCGAGTGTGTGGTACGGGCAATCCATCCC
GTACCGTATGTACTACTCGAGGGGCACACCTCATGACAATGTGTCGAATT
CCGACCTTGCCACCGGCGGCCGGCACATGTATTTATGCACAACACGTTGT
CTCACACGCTGCGCCGTCATGTACCGGTAAAATTCCTCTTCCTGCAGGTG
TATGAGGTCCAGCTCTGGTACATGGCACAATCTCTTCTCAACCTTTACCC
CCCTTGAGGTACCTCCCTTGCCCCTGACCCTGTTGCAATCCTCTAGGTTT
ACCGCCGGCCACGCCAAGCGTTACGTGGACAAGATGCGTTCGCAACACCG
TAGGGGGGAAGCCCCACCGGGGCAGGTGGACAATGCCAAGGTGGACTGGT
CGGGCGTGGGCGCTAGGTAA
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Coding sequence (CDS) from alignment at Scaffold_385:88857..91176-

>EsuBft368_9a-0001 ID=EsuBft368_9a-0001|Name=EsuBft368_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_385:88857..91176- (Ectocarpus subulatus male Bft15b)
ATGGTTGAGCTCAAATGGTGTATGCAGTGCGACGCTGGCGACGTTCCTGC
GCACGCTGCTCTTGCTTGTGCTTCCAGTAGTGCCTTCTCTCCTTCCAAAG
AAGAAGGCGCGGTTTTTATGGATTCGAATACCGGTCCTGTCGAAAATGAT
GCCAACACGGCGGTGGAATTGGAATCAACGCCAGACACAGAAGCCCTTAC
CACTGCTGATGGCGAGCTAGCGCAAGCAAGTGACGATGTCACGGCGTCGG
AAGCTGGGACTGGCCTTGAAAACGACGAGCAAGGGTCCGGGCGGCTGTCC
GTTCTGGTCCCCACGCTCGGGCACTTTGCGACACGCGCTCACAAGGCGTC
GCAGCCGTATTTGTCGTACGCGGCGATGGCCTCTCAGGAGGCGGCGAGGT
GTATGAGGTCCAGCTCTGGTACATGGCACAATCTCTTCTCAACCTTTACC
CCCCTTGAGGTACCTCCCTTGCCCCTGACCCTGTTGCAATCCTCTAGGTT
TACCGCCGGCCACGCCAAGCGTTACGTGGACAAGATGCGTTCGCAACACC
GTAGGGGGGAAGCCCCACCGGGGCAGGTGGACAATGCCAAGGTGGACTGG
TCGGGCGTGGGCGCTAGGTAA
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