EsuBft368_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft368_7a-0001
Unique Name	EsuBft368_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:117507..125488 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G569
ProteomeId	EsuBft368_7
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR003397
Protein domains	PTHR14110
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Note	mitochondrial import inner membrane translocase subunit tim22 os:kluyveromyces lactis (strain a [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	2342
Hectar predicted targeting category	signal anchor
Evalue	5.14e-131
EggNOG OGs	COG5596@1\|root,KOG3225@2759\|Eukaryota
Ec32 ortholog description	Mitochondrial import inner membrane translocase subunit TIM22 homolog
Ec32 ortholog	Ec-14_006420.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	TIMM22
KEGG rclass	RC00017
KEGG ko	ko:K01094,ko:K17790
KEGG TC	3.A.8.1
KEGG Reaction	R02029
KEGG Pathway	ko00564,ko01100,map00564,map01100
GOs	GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042721,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
EC	3.1.3.27
Description	Mitochondrial import inner membrane translocase subunit
COG category	O
BRITE	ko00000,ko00001,ko01000,ko02000,ko03029

Cross References

External references for this mRNA


Database	Accession
GO	0006810

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a	EsuBft368_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 117507..125488 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a-0001	EsuBft368_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 117549..123767 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a-0001-exon	agat-exon-101892	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 117507..117759 +
EsuBft368_7a-0001-exon	agat-exon-101890	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 118245..118354 +
EsuBft368_7a-0001-exon	agat-exon-101891	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 118546..118615 +
EsuBft368_7a-0001-exon	EsuBft368_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 123580..125488 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a-0001-exon	agat-five_prime_utr-8991	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_385 117507..117548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a-0001-cds	EsuBft368_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 117549..117759 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft368_7a-0001-exon	agat-three_prime_utr-14175	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 123768..125488 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:117507..125488+
coding sequence from alignment at Scaffold_385:117507..125488+

spliced messenger RNA

>EsuBft368_7a-0001 ID=EsuBft368_7a-0001|Name=EsuBft368_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2342bp|location=Sequence derived from alignment at Scaffold_385:117507..125488+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCTGCTGCTGTACTGCCTGCCCTCACGTACTCGTTCACCATGCCTGA
TGACGGCGAAAGGCGACACGATGAATGTTGTAAACAGCAGGGAACCGAGG
GGTCGAGGTCTCTGCACCCCCAACTGGGCTCGAGGTTGCCGTTTTTCCTT
CCCTGGGTTCCCCGACCTGCAGCGGGAGCGGCGGATGCGATGCCAACGCC
GCCGGTCTTGACTGAGTCTTGCGGCTTCAAGCTCATTATGGGCACCGTGG
GAGGGGCAGGAATGGGCTTCGTGTTCGGTTTGTTTCTCGGGGCGATGGGC
GATATGCAGCCGTTACAGATGATCAACGGACGGGAGGTCCCTCAGGCACC
CTTCAGAGAACAGGCGCGACTGGCCTACAAGCAAACCGCGGACCGATCGC
TTAGCATGGGGAGAAATTTTGCATCGTTTTCAGCTATTTTTATGGGGTCG
GAATGCGTCATCGAGAAAATGCGCGGCAAGACTGACATGATGAACTCCGT
CTACGCGGGGTGCGCGACAGGGGCGGCCTTCGGCATGAAGCAAGGCCCGC
AGGCGGCATGTTTCGGCTGCGTGGGGATGGCCACGTTCTCTGCGCTTATG
GATAAACTCATGGGGCACTAGGCACTCTTTGGCAGTAACATTTTGGTCAG
GATAAGATGTGACGGAGCGGTCAGGCTGGCCACTGTCGTCAAGAAGCGAG
CTCTTCCTGTCGTACAAATGGGGGCACGACAACGTACTGCAGCGCGAAAC
AACACTACGATTATCGCGTGTTTTCGACGATCTGCCTGCGCGGAAGGAAG
AGCAGGGCTGTCTGTGTCACTGCTGTAGGTGTTCACGATACATGTAGAGA
AAAAAAATCTGTGTGAGGTGCAAGCCGGGTTTGTTTGGTTTCGGTTCGGT
AGCCCATGGCGAGCGCAGTGCCGGCTGTTGGAAAATGCCTTTGCGAGTGC
CTGCAGCCTTGCAGTGCACCATTTGTGCAGGGTACACAAGGTGGCATCGA
TTTTTGTGAGACGATGACAACGAGAATGTCCGCCGAACCGGGCCAGCCGT
CATGTACAGTAGTGGGATACCATATTTTCAGGGGTTTGATTCATCAGTCA
CACCGTTGGGGTGCGTATTGCTCGCTCTCAAGCCTCGACCCTCTTCTTTT
TATCTGCTGCCGCCGACCACTACCTATATCTCCAATCCCACCGGTGGGTA
TAGTCTGCAAGTCAAACCAAGCGTCTGGGGAAACACGCCGTGGAAAAGAA
AAAAATCCTCCATCCTACGTCTCTTAACACATGACCAGCAATGAAATTCT
TTGCAATTCTTATTCTTTCAATTTCTGCTGTTCTGGCACAGCGACAGACA
CAGAAATTCGTCGGTTGGATCCTCTCAGCCAAACCAAGCATCTGGGGAAA
AATGTCGTGGACAAAAAAATATTATCCTCCATCCTACGTCTCCAACATAT
GACCAGCCTATGAATTTTCTTTGCAAATTTTTGTTTTGCTAGCACAGCGA
CACAGAAATTCGTCGGCTGGGTCCTCTCAACCGACACACACCCATCCACC
CACCGACTTTCCCACTTCCTACCAATATATTCCCCGACTCTGATTCTTCA
CAGTACCACCCGCGCACAGTAAGCACAGGCTAAACAGTCGTTTGTGAAAT
GCTTCCAACAGACGAAATCCCGCTGCTACATACTTTGGCCCTGCCATTGC
CTGGCAACCCCCGCTGGAGACAAGGAACCGTCCTCCTGTTTTACGTTCTG
CATGATACGGCCAAAACCAAACGCCAAAACCGAGCGTCGTTGGTTGCACT
GCGACATGCAAACTAATGTGAAAAATACAGCAAGGTAACAGAGAAAGAAA
GACAAAAACAGCAGAGAACCAAAGCAATAACCTCGACTGCCGCGGGCAAC
AAGCAAAACACACCCGGCAAAAGAAAATCGAAGCAGCACTAAGCGTGAAG
CGCCATTCCCCCCTACACCACCACCCCCTCCGCCCCGATGCCCGCAGACC
GGAAATGGTGCCAGTTCCAACTTCAAAACGTTCAGCAGCTCGTCGGTGCC
ATCAACTACCTCTCTTGCTCCGTGCCTTCTTCTCTGGACGCCTCTCTACC
CTTCCACCCCCAGGTCTCTCACACCACCCGCGCGGAGCTTTTCTGAGGTT
AAATCGATGGCTTGAGCACCCGCCGCCCACTCCGTGCAGACAAAAACATA
TTGGTGTTATTCCATCTCCGTTCTCCTTCGGGTCTCCGTCCTTGCCAAGG
AATTTTCCATGTGCGGAACGCTTCTTCTGTGGCACTCAGAGCACCTTCAC
TCTCACCCGACCCGACGTTGCCTCGCCACGCCCCCCACGTCC

protein sequence of EsuBft368_7a-0001

>EsuBft368_7 ID=EsuBft368_7|Name=EsuBft368_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=192bp
MPDDGERRHDECCKQQGTEGSRSLHPQLGSRLPFFLPWVPRPAAGAADAM
PTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVP
QAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMM
NSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH

mRNA from alignment at Scaffold_385:117507..125488+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft368_7a-0001 ID=EsuBft368_7a-0001|Name=EsuBft368_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7982bp|location=Sequence derived from alignment at Scaffold_385:117507..125488+ (Ectocarpus subulatus male Bft15b)
GCTGCTGCTGCTGTACTGCCTGCCCTCACGTACTCGTTCACCATGCCTGA
TGACGGCGAAAGGCGACACGATGAATGTTGTAAACAGCAGGGAACCGAGG
GGTCGAGGTCTCTGCACCCCCAACTGGGCTCGAGGTTGCCGTTTTTCCTT
CCCTGGGTTCCCCGACCTGCAGCGGGAGCGGCGGATGCGATGCCAACGCC
GCCGGTCTTGACTGAGTCTTGCGGCTTCAAGCTCATTATGGGCACCGTGG
GAGGTAAGGCATTGTTTTGGGGTGTAACGCTTGCTTGCTCTGGGGTATAA
CCGCTGCTTTTGTGGTGTACTGCGACATGCAGGGTGTCTGTGCTACTTGG
AGTTACCCTTGGTGTACAGCTAAAGTAGCTTGCCGAGTGATGCCCGCGCG
GATGATCCAGTTCTCTGTCCAATGTTGTGCTATGGCACCACTTGTGTGGT
TGAGCTGGCATCTGCAGTGCAGCCTAGATAGAACGAGGAGAATGTTTGGC
AGTAACACAATGGCATCTCCATGAACAAAAACGTCTCGAGCGACATACAT
CGCCGAAAAGTGTTGGCAAGACAGTCGTTTCCCCGCACACCCGTCTTTAG
TGCACGACCGCTAATAACTGATGTACATAAGTTGGTTGTGTCATGATCCC
ATGAATCTGGCAGCTCACCTTTGGTTGATAGCCGTGCTACGGCTGGTACT
GAATGCCTTGCTTTTCGATTCCGTTTTCCTTGCAACAGGGGCAGGAATGG
GCTTCGTGTTCGGTTTGTTTCTCGGGGCGATGGGCGATATGCAGCCGTTA
CAGATGATCAACGGACGGGAGGTCCCTCAGGCACCCTTCAGAGAACAGGT
ATAAACACCCCACCATTTGTATGTATGCATTCTTGCGGCAGGAAGCGCTG
GGTTGGCTGCAGCCATCCCGCACGTATGCATACGTGCTGGATACGTAGTG
CCGCTTTCGTGCATTGGGACGAACTTCCACGCCCGCGATCTCCTCTCCCC
AGCCTGACGAACTTGCGATGTTGGCTTTGGCTGTCTCAGGCGCGACTGGC
CTACAAGCAAACCGCGGACCGATCGCTTAGCATGGGGAGAAATTTTGCAT
CGTTTTCAGGTGTGTATTATTTCCTCATTCACATGTAGTACGTCACCCCG
GTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAATGACGTTGTAAA
ACAAGCCGTCCCCCATCGGTGTACCGCGGTGTTTGCCATCGGGGTTGGGT
TTTCGTCGCTTGGCAATGACGTTGTAAAACAAGCCGTCCCCCATGNNNNN
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CCCCCATCGGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGTCAACGA
CTTAGTAAAACAAGACAATTCACTTCGTGAGCTCGGCAACCAGGTTACCG
TTTGTTTGTTTTTACCTCTGTTTTTTTTTGGCGGTAACCATGAGTGGTGG
TCGAGTGGATCATGTTTTGCGGGGTGGAGAAGCCTCACTCCGCGCGAGGG
GGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGT
TACACAGTGCTTTTAACTGTCTCTGGATGTGAAAGCACCAGAAAATAAAT
CAAGTCATACGCAGCTGTCATCCGTACGCAAGAAAGTAAGCACAAGATGC
CGAACACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATA
TATCACGGCGCTTCGCGCTTGGTGATGTGAGAGTCTCGTCCGGTGAGAAC
CCGGCGTGCTCCGTCCCGGCTTTGTGGGATGCGAGGTCAATGTTCGAACG
ACTACGGCATGCACGACTATGAGTACATGTAGTACGTGATCAGATGTATA
TACACGTAAGTACGAAGGTACAGCTGTAGTAGGATGACGCGTTCGTTGTG
CTGCACTGATGCAATGGGAGATCGTATCGGCCCAGCTATAAATTCTGCAC
GTCGAGGTTATCGCCTCCAGAAGTCGGGGTGGTGGTCTCTTAGAAACCTA
CCGTGGCTGAGACGTGGCCCGTTTCACGGCGCTGACGACAGCGCTGGGCG
AGCCTATCTTACTGCCGTTGTCAATGAGTGCCCTCCTTCGTGCTCGAGAG
TAAGATTTACGTACTGCTGACCAAAGCTGTGCGCCGCGGGAGTTCCGTAA
TTGGCTCAGGAAATAAGGCGATGCACTCCTTGCACCACGTGAAGCGCGTG
GTAGAGCCTCCTCTAGTGCACGGCATGCAGTGGCCAAGAATCGGCGCCAA
CCTCGAACAAGAAGCTGAAAGCAATAGCTGCCGAAACCACTCTTCGGCCT
TAACAATCTTAACCCACCGACTCCCGCTTCTTGCTGCGCGTCGACGATGT
CTGCCGTCGCTGTGTCTACCGTTTCTTTCGTGTTGATCATGCTTTTCACG
CATGTGGGCCTGCCCCCCGAAAGCTATTTTTATGGGGTCGGAATGCGTCA
TCGAGAAAATGCGCGGCAAGACTGACATGATGAACTCCGTCTACGCGGGG
TGCGCGACAGGGGCGGCCTTCGGCATGAAGCAAGGCCCGCAGGCGGCATG
TTTCGGCTGCGTGGGGATGGCCACGTTCTCTGCGCTTATGGATAAACTCA
TGGGGCACTAGGCACTCTTTGGCAGTAACATTTTGGTCAGGATAAGATGT
GACGGAGCGGTCAGGCTGGCCACTGTCGTCAAGAAGCGAGCTCTTCCTGT
CGTACAAATGGGGGCACGACAACGTACTGCAGCGCGAAACAACACTACGA
TTATCGCGTGTTTTCGACGATCTGCCTGCGCGGAAGGAAGAGCAGGGCTG
TCTGTGTCACTGCTGTAGGTGTTCACGATACATGTAGAGAAAAAAAATCT
GTGTGAGGTGCAAGCCGGGTTTGTTTGGTTTCGGTTCGGTAGCCCATGGC
GAGCGCAGTGCCGGCTGTTGGAAAATGCCTTTGCGAGTGCCTGCAGCCTT
GCAGTGCACCATTTGTGCAGGGTACACAAGGTGGCATCGATTTTTGTGAG
ACGATGACAACGAGAATGTCCGCCGAACCGGGCCAGCCGTCATGTACAGT
AGTGGGATACCATATTTTCAGGGGTTTGATTCATCAGTCACACCGTTGGG
GTGCGTATTGCTCGCTCTCAAGCCTCGACCCTCTTCTTTTTATCTGCTGC
CGCCGACCACTACCTATATCTCCAATCCCACCGGTGGGTATAGTCTGCAA
GTCAAACCAAGCGTCTGGGGAAACACGCCGTGGAAAAGAAAAAAATCCTC
CATCCTACGTCTCTTAACACATGACCAGCAATGAAATTCTTTGCAATTCT
TATTCTTTCAATTTCTGCTGTTCTGGCACAGCGACAGACACAGAAATTCG
TCGGTTGGATCCTCTCAGCCAAACCAAGCATCTGGGGAAAAATGTCGTGG
ACAAAAAAATATTATCCTCCATCCTACGTCTCCAACATATGACCAGCCTA
TGAATTTTCTTTGCAAATTTTTGTTTTGCTAGCACAGCGACACAGAAATT
CGTCGGCTGGGTCCTCTCAACCGACACACACCCATCCACCCACCGACTTT
CCCACTTCCTACCAATATATTCCCCGACTCTGATTCTTCACAGTACCACC
CGCGCACAGTAAGCACAGGCTAAACAGTCGTTTGTGAAATGCTTCCAACA
GACGAAATCCCGCTGCTACATACTTTGGCCCTGCCATTGCCTGGCAACCC
CCGCTGGAGACAAGGAACCGTCCTCCTGTTTTACGTTCTGCATGATACGG
CCAAAACCAAACGCCAAAACCGAGCGTCGTTGGTTGCACTGCGACATGCA
AACTAATGTGAAAAATACAGCAAGGTAACAGAGAAAGAAAGACAAAAACA
GCAGAGAACCAAAGCAATAACCTCGACTGCCGCGGGCAACAAGCAAAACA
CACCCGGCAAAAGAAAATCGAAGCAGCACTAAGCGTGAAGCGCCATTCCC
CCCTACACCACCACCCCCTCCGCCCCGATGCCCGCAGACCGGAAATGGTG
CCAGTTCCAACTTCAAAACGTTCAGCAGCTCGTCGGTGCCATCAACTACC
TCTCTTGCTCCGTGCCTTCTTCTCTGGACGCCTCTCTACCCTTCCACCCC
CAGGTCTCTCACACCACCCGCGCGGAGCTTTTCTGAGGTTAAATCGATGG
CTTGAGCACCCGCCGCCCACTCCGTGCAGACAAAAACATATTGGTGTTAT
TCCATCTCCGTTCTCCTTCGGGTCTCCGTCCTTGCCAAGGAATTTTCCAT
GTGCGGAACGCTTCTTCTGTGGCACTCAGAGCACCTTCACTCTCACCCGA
CCCGACGTTGCCTCGCCACGCCCCCCACGTCC

Coding sequence (CDS) from alignment at Scaffold_385:117507..125488+

>EsuBft368_7a-0001 ID=EsuBft368_7a-0001|Name=EsuBft368_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=579bp|location=Sequence derived from alignment at Scaffold_385:117507..125488+ (Ectocarpus subulatus male Bft15b)
ATGCCTGATGACGGCGAAAGGCGACACGATGAATGTTGTAAACAGCAGGG
AACCGAGGGGTCGAGGTCTCTGCACCCCCAACTGGGCTCGAGGTTGCCGT
TTTTCCTTCCCTGGGTTCCCCGACCTGCAGCGGGAGCGGCGGATGCGATG
CCAACGCCGCCGGTCTTGACTGAGTCTTGCGGCTTCAAGCTCATTATGGG
CACCGTGGGAGGGGCAGGAATGGGCTTCGTGTTCGGTTTGTTTCTCGGGG
CGATGGGCGATATGCAGCCGTTACAGATGATCAACGGACGGGAGGTCCCT
CAGGCACCCTTCAGAGAACAGGCGCGACTGGCCTACAAGCAAACCGCGGA
CCGATCGCTTAGCATGGGGAGAAATTTTGCATCGTTTTCAGCTATTTTTA
TGGGGTCGGAATGCGTCATCGAGAAAATGCGCGGCAAGACTGACATGATG
AACTCCGTCTACGCGGGGTGCGCGACAGGGGCGGCCTTCGGCATGAAGCA
AGGCCCGCAGGCGGCATGTTTCGGCTGCGTGGGGATGGCCACGTTCTCTG
CGCTTATGGATAAACTCATGGGGCACTAG