EsuBft368_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft368_12a-0001
Unique NameEsuBft368_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:73645..76299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G565
ProteomeIdEsuBft368_12
Protein domainsIPR016477
Protein domainsPTHR12149
Protein domainsIPR011009
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteprotein-ribulosamine 3- chloroplastic os:arabidopsis thaliana gn:at3g61080 pe:1 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1844
Hectar predicted targeting categorysignal peptide
Evalue8.42e-299
EggNOG OGsCOG3001@1|root,KOG3021@2759|Eukaryota
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-14_006380.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K15523
EC2.7.1.172
Descriptionprotein-ribulosamine 3-kinase activity
COG categoryG
BRITEko00000,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0005975
EC2.7.1
GO0052673
GO0005794
GO0016301
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12aEsuBft368_12aEctocarpus subulatus male Bft15bgeneScaffold_385 73645..76299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12a-0001EsuBft368_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 73669..75742 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12a-0001-exonEsuBft368_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 73645..73977 +
EsuBft368_12a-0001-exonagat-exon-101928Ectocarpus subulatus male Bft15bexonScaffold_385 74199..74369 +
EsuBft368_12a-0001-exonagat-exon-101927Ectocarpus subulatus male Bft15bexonScaffold_385 74496..74934 +
EsuBft368_12a-0001-exonagat-exon-101926Ectocarpus subulatus male Bft15bexonScaffold_385 75399..76299 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12a-0001-exonagat-five_prime_utr-8984Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_385 73645..73668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12a-0001-cdsEsuBft368_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 73669..73977 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft368_12a-0001-exonagat-three_prime_utr-14168Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 75743..76299 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft368_12a-0001 ID=EsuBft368_12a-0001|Name=EsuBft368_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1844bp|location=Sequence derived from alignment at Scaffold_385:73645..76299+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACCGCAGGATAGGAGACAGGAGCATGCCGAGGAGCATGGTGTCATCTTC
GGGAGCAGCGAGAAGAAGTAACAAATTCACATCAAAGCGGCGTCGCGTAG
TGCTTGGATTATGCCTCGTCCTGCTGCCAACGCAAGGAGGTTCCTTCCAT
GTTCTCCCGTCGAGATGCCGCTTCGAGAGCCAGCTCCGTTGTCATGCAAC
CATGTCGAGGTCGCGGCAGCTGAACAGCCAGGCGCAAGAGCTCGACGGTG
GGGATAGCGGGTCGGTCCCTGGTGTACTCCGCGATGTTGTCATCGAGAAA
ATCGAGGAGCTGGGTGGCGGGAAGGTGCAGCAGGTGCAGGAGACTACGGC
TGGACCCGGACTACATAACAGGCACTTCAAGTACACGGCTACCGGCGGGA
CCTTCATGGCCAAGATCGCGAAGCCGAGCCGCTCGAATCCTCCGACGAAC
GACTGGCGGGAGGCCAGTCTGGACAATTTCTTCGCCGAACAAACAGGTCT
AGAGGCCATCTTGGCAACGGGCTGCTTGCGCGCCCCGAAGCCTCTGGCTC
TCGGGACGTTGCCCCTCGGTGGTTCGTTTCTGCTTATGGAATACATGCCC
TTCATACCCTTCGGACAGTCCATACCAGAGGTTTTGCGGAACCTCGGGGA
GGGGTTGGCAGCGATGCACTTGCAAGACCCTCCTCCGTCTTGCGGAGGGT
TCGGGTTTGTCGGGGACAATTTCCTGGGGGGAACGCGTCAAGTCAACACG
TGGGACAAGGACTTCTCGAACTTTTTCGTGCAGAGAAGGCTCTCGCCGCA
GTTCGCGCAAGCCAGGACGAAGTTCCAGGACAGCTGGGGCACCAAGAATG
AAGACTTCGAGAGAATAGGAAGGGAGGCCATCCTAACGGCGAAAAAGGTC
CTCGAGCCGGTGGCAAACTCGAAGCCGGTTCTTCTCCATGGTGATCTCTG
GGTGGGTAACTGCGGAGGCGTACCGGGAGAGGGGAGAACACGAGAGGCGG
CTGTTTTCGACCCCGCGGTATGGTATGGTCTACCCGAGTTCGACCTCGCC
CTGGCCACGATGTTTGGCGGATTCGGGGAACCATTCTACGAGACGTACCA
CGCCATAATACCCAAGGCCCCGGGGTTCGAGCGCAGGATGCGGGTTTACA
AGCTATACCATTACCTTAACCACTTGAACCTGCACGGTGCAGGGTTCGGC
CATGGGGGCACGTTCGAAGACCCAAAAGGGTACTATGAGCGGAGTTTGAC
GTTGATGCAGGAGATCGTGAAGGACGGCTTTTCATGAGCAGACGGACTTT
ACAGTAGTTTCGCCTCTTGTTCTACCTTAGGTGTTTAATGGCGGGTGGCG
AGTGATAGTAGTCATCACTTTGGATCACGAGGTCTGCTTTTTGCGTCTCT
TTCGTGCGGCGGAGATTTTTGTGGGCAGTCACATCTGCTGGGAGCCTAAA
CAGTACCGTATGTATTAGCGGCAGACAACACAAACGGCTGAATGTGTTCA
ACGACGGCCAACGAGAGAAGGGAGAAACGTAGAGGACCCATCCATGTGTC
CCAACCATACACACAATGATGCAGCCGTTAAAGCAGCCCGTTTGCGGAGT
GGGGAATGAGCGCTGTCGTTGTACGCCGACAATCCGGCGGGCGGTATTTG
TCATCAAGCTGAATTTGGCTTGAACGCGGAAGCGGGCACCGCGCAAAGAC
CTAGTTGGAAGAGAGAGAGACAGAGACAGCAGTATTTTTATTTATCTCGT
ATGTTTACCTACATATTAAGTCAAGCGCTACAACGTACATACTGACTGGC
TGGTTTCCTTGCAAACCATTTTTTTCTGAGTTTCGCATCCGACA
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protein sequence of EsuBft368_12a-0001

>EsuBft368_12 ID=EsuBft368_12|Name=EsuBft368_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=420bp
MPRSMVSSSGAARRSNKFTSKRRRVVLGLCLVLLPTQGGSFHVLPSRCRF
ESQLRCHATMSRSRQLNSQAQELDGGDSGSVPGVLRDVVIEKIEELGGGK
VQQVQETTAGPGLHNRHFKYTATGGTFMAKIAKPSRSNPPTNDWREASLD
NFFAEQTGLEAILATGCLRAPKPLALGTLPLGGSFLLMEYMPFIPFGQSI
PEVLRNLGEGLAAMHLQDPPPSCGGFGFVGDNFLGGTRQVNTWDKDFSNF
FVQRRLSPQFAQARTKFQDSWGTKNEDFERIGREAILTAKKVLEPVANSK
PVLLHGDLWVGNCGGVPGEGRTREAAVFDPAVWYGLPEFDLALATMFGGF
GEPFYETYHAIIPKAPGFERRMRVYKLYHYLNHLNLHGAGFGHGGTFEDP
KGYYERSLTLMQEIVKDGFS
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mRNA from alignment at Scaffold_385:73645..76299+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft368_12a-0001 ID=EsuBft368_12a-0001|Name=EsuBft368_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2655bp|location=Sequence derived from alignment at Scaffold_385:73645..76299+ (Ectocarpus subulatus male Bft15b)
AACCGCAGGATAGGAGACAGGAGCATGCCGAGGAGCATGGTGTCATCTTC
GGGAGCAGCGAGAAGAAGTAACAAATTCACATCAAAGCGGCGTCGCGTAG
TGCTTGGATTATGCCTCGTCCTGCTGCCAACGCAAGGAGGTTCCTTCCAT
GTTCTCCCGTCGAGATGCCGCTTCGAGAGCCAGCTCCGTTGTCATGCAAC
CATGTCGAGGTCGCGGCAGCTGAACAGCCAGGCGCAAGAGCTCGACGGTG
GGGATAGCGGGTCGGTCCCTGGTGTACTCCGCGATGTTGTCATCGAGAAA
ATCGAGGAGCTGGGTGGCGGGAAGGTGCAGCAGGTGTGTCTGTGTATACA
TACAAAAGAGGAATGCATGTGGTCGCACCATGTGTCAAGCAAGGGCCCGT
GAGACAACTTGCTGTCCTGCCGGACCTGCTGTGTGTGCGATGTGTTGTGC
CCACGCATCTCTATCACTTATGGTGCTGTCGTTTTCAGTTGCCTTGCAGA
AACATCATCTGCCACCCACGTGTGATGCACACGATCAATTGTACATGTGT
AAAGGTGCAGGAGACTACGGCTGGACCCGGACTACATAACAGGCACTTCA
AGTACACGGCTACCGGCGGGACCTTCATGGCCAAGATCGCGAAGCCGAGC
CGCTCGAATCCTCCGACGAACGACTGGCGGGAGGCCAGTCTGGACAATTT
CTTCGCCGAACAAACAGGTCTAGAGGTACGGGGAACCAAGCTTAATGGTA
TGCACCTTAGCTGTACGTGCGAATTGACGACTCAGTAACGAGGGAGGCTG
AACGAAACGTTCCCTTCTCCCTGCGCACCTACCACCATCTGTGACTGGCA
GGCCATCTTGGCAACGGGCTGCTTGCGCGCCCCGAAGCCTCTGGCTCTCG
GGACGTTGCCCCTCGGTGGTTCGTTTCTGCTTATGGAATACATGCCCTTC
ATACCCTTCGGACAGTCCATACCAGAGGTTTTGCGGAACCTCGGGGAGGG
GTTGGCAGCGATGCACTTGCAAGACCCTCCTCCGTCTTGCGGAGGGTTCG
GGTTTGTCGGGGACAATTTCCTGGGGGGAACGCGTCAAGTCAACACGTGG
GACAAGGACTTCTCGAACTTTTTCGTGCAGAGAAGGCTCTCGCCGCAGTT
CGCGCAAGCCAGGACGAAGTTCCAGGACAGCTGGGGCACCAAGAATGAAG
ACTTCGAGAGAATAGGAAGGGAGGCCATCCTAACGGCGAAAAAGGTCCTC
GAGCCGGTGGCAAACTCGAAGCCGGTTCTTCTCCATGGTGGTGAGTTATA
AGGGAACCAAGGGAGCAGGACCCTACGTCGCCGCAAAATTAAACGACATA
CAGCAATATTCTTAATTCCCGGGGTGTCTTTCTGGACAAGCAGTGCGGTT
GTTGTCTTCGCCTTTGAAGTCGTTCTTGACCTTCATCCAGCAACTCCTCA
TCCATCTGTACGGCAAAGCAATGAATTTCCCTGGTCGCAAGGTAGCGGGT
ACGTCGGGCACACTGCCTGTAGCGGACAGATAGTAGTTCAGCGCTGGTGG
AGGGGGTTCCGGCGCTTCGCAAAGAGGGTCCCTGCGGGACTTGTTGCCTT
GGATGCTTGTGAAGGGGTGTTCATATCCCTCACCCTGTCCCAAGCGAAGC
AACACGGTTGTTCCTACCCGTACTGCCCTCTCTCTTTCGGGTAACTCGTC
ACACTTCACAAGGAACATCCACTGCCCCCTGCCCGCGCGGCTTGCGCGTT
GCAGATCTCTGGGTGGGTAACTGCGGAGGCGTACCGGGAGAGGGGAGAAC
ACGAGAGGCGGCTGTTTTCGACCCCGCGGTATGGTATGGTCTACCCGAGT
TCGACCTCGCCCTGGCCACGATGTTTGGCGGATTCGGGGAACCATTCTAC
GAGACGTACCACGCCATAATACCCAAGGCCCCGGGGTTCGAGCGCAGGAT
GCGGGTTTACAAGCTATACCATTACCTTAACCACTTGAACCTGCACGGTG
CAGGGTTCGGCCATGGGGGCACGTTCGAAGACCCAAAAGGGTACTATGAG
CGGAGTTTGACGTTGATGCAGGAGATCGTGAAGGACGGCTTTTCATGAGC
AGACGGACTTTACAGTAGTTTCGCCTCTTGTTCTACCTTAGGTGTTTAAT
GGCGGGTGGCGAGTGATAGTAGTCATCACTTTGGATCACGAGGTCTGCTT
TTTGCGTCTCTTTCGTGCGGCGGAGATTTTTGTGGGCAGTCACATCTGCT
GGGAGCCTAAACAGTACCGTATGTATTAGCGGCAGACAACACAAACGGCT
GAATGTGTTCAACGACGGCCAACGAGAGAAGGGAGAAACGTAGAGGACCC
ATCCATGTGTCCCAACCATACACACAATGATGCAGCCGTTAAAGCAGCCC
GTTTGCGGAGTGGGGAATGAGCGCTGTCGTTGTACGCCGACAATCCGGCG
GGCGGTATTTGTCATCAAGCTGAATTTGGCTTGAACGCGGAAGCGGGCAC
CGCGCAAAGACCTAGTTGGAAGAGAGAGAGACAGAGACAGCAGTATTTTT
ATTTATCTCGTATGTTTACCTACATATTAAGTCAAGCGCTACAACGTACA
TACTGACTGGCTGGTTTCCTTGCAAACCATTTTTTTCTGAGTTTCGCATC
CGACA
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Coding sequence (CDS) from alignment at Scaffold_385:73645..76299+

>EsuBft368_12a-0001 ID=EsuBft368_12a-0001|Name=EsuBft368_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1263bp|location=Sequence derived from alignment at Scaffold_385:73645..76299+ (Ectocarpus subulatus male Bft15b)
ATGCCGAGGAGCATGGTGTCATCTTCGGGAGCAGCGAGAAGAAGTAACAA
ATTCACATCAAAGCGGCGTCGCGTAGTGCTTGGATTATGCCTCGTCCTGC
TGCCAACGCAAGGAGGTTCCTTCCATGTTCTCCCGTCGAGATGCCGCTTC
GAGAGCCAGCTCCGTTGTCATGCAACCATGTCGAGGTCGCGGCAGCTGAA
CAGCCAGGCGCAAGAGCTCGACGGTGGGGATAGCGGGTCGGTCCCTGGTG
TACTCCGCGATGTTGTCATCGAGAAAATCGAGGAGCTGGGTGGCGGGAAG
GTGCAGCAGGTGCAGGAGACTACGGCTGGACCCGGACTACATAACAGGCA
CTTCAAGTACACGGCTACCGGCGGGACCTTCATGGCCAAGATCGCGAAGC
CGAGCCGCTCGAATCCTCCGACGAACGACTGGCGGGAGGCCAGTCTGGAC
AATTTCTTCGCCGAACAAACAGGTCTAGAGGCCATCTTGGCAACGGGCTG
CTTGCGCGCCCCGAAGCCTCTGGCTCTCGGGACGTTGCCCCTCGGTGGTT
CGTTTCTGCTTATGGAATACATGCCCTTCATACCCTTCGGACAGTCCATA
CCAGAGGTTTTGCGGAACCTCGGGGAGGGGTTGGCAGCGATGCACTTGCA
AGACCCTCCTCCGTCTTGCGGAGGGTTCGGGTTTGTCGGGGACAATTTCC
TGGGGGGAACGCGTCAAGTCAACACGTGGGACAAGGACTTCTCGAACTTT
TTCGTGCAGAGAAGGCTCTCGCCGCAGTTCGCGCAAGCCAGGACGAAGTT
CCAGGACAGCTGGGGCACCAAGAATGAAGACTTCGAGAGAATAGGAAGGG
AGGCCATCCTAACGGCGAAAAAGGTCCTCGAGCCGGTGGCAAACTCGAAG
CCGGTTCTTCTCCATGGTGATCTCTGGGTGGGTAACTGCGGAGGCGTACC
GGGAGAGGGGAGAACACGAGAGGCGGCTGTTTTCGACCCCGCGGTATGGT
ATGGTCTACCCGAGTTCGACCTCGCCCTGGCCACGATGTTTGGCGGATTC
GGGGAACCATTCTACGAGACGTACCACGCCATAATACCCAAGGCCCCGGG
GTTCGAGCGCAGGATGCGGGTTTACAAGCTATACCATTACCTTAACCACT
TGAACCTGCACGGTGCAGGGTTCGGCCATGGGGGCACGTTCGAAGACCCA
AAAGGGTACTATGAGCGGAGTTTGACGTTGATGCAGGAGATCGTGAAGGA
CGGCTTTTCATGA
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