EsuBft3642_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3642_3a-0001
Unique NameEsuBft3642_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:355228..359011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLJ1
ProteomeIdEsuBft3642_3
Protein domainsPTHR11002
Protein domainsIPR001765
Ownerapollo_admin@sb-roscoff.fr
Notecarbonic anhydrase os:emericella nidulans (strain fgsc a4 atcc 38163 cbs nrrl 194 m139) gn:an18 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1516
Hectar predicted targeting categorymitochondrion
Evalue4.52e-143
EggNOG OGsCOG0288@1|root,KOG1578@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
EC4.2.1.1
Descriptioncarbonate dehydratase activity
COG categoryP
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0015976
GO0005515
EC4.2.1.1
GO0005758
GO0034599
GO0005829
GO0071244
GO0005794
GO0004089
GO0071470
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3aEsuBft3642_3aEctocarpus subulatus male Bft15bgeneScaffold_372 355228..359011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3a-0001EsuBft3642_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 355395..358604 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3a-0001-exonEsuBft3642_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 355228..355495 +
EsuBft3642_3a-0001-exonagat-exon-29676Ectocarpus subulatus male Bft15bexonScaffold_372 355955..356072 +
EsuBft3642_3a-0001-exonagat-exon-29682Ectocarpus subulatus male Bft15bexonScaffold_372 356851..356943 +
EsuBft3642_3a-0001-exonagat-exon-29681Ectocarpus subulatus male Bft15bexonScaffold_372 357122..357381 +
EsuBft3642_3a-0001-exonagat-exon-29680Ectocarpus subulatus male Bft15bexonScaffold_372 357561..357583 +
EsuBft3642_3a-0001-exonagat-exon-29678Ectocarpus subulatus male Bft15bexonScaffold_372 357704..357785 +
EsuBft3642_3a-0001-exonagat-exon-29677Ectocarpus subulatus male Bft15bexonScaffold_372 357981..358101 +
EsuBft3642_3a-0001-exonagat-exon-29679Ectocarpus subulatus male Bft15bexonScaffold_372 358461..359011 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3a-0001-exonagat-five_prime_utr-8910Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 355228..355394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3a-0001-cdsEsuBft3642_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 355395..355495 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_3a-0001-exonagat-three_prime_utr-14041Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 358605..359011 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3642_3a-0001 ID=EsuBft3642_3a-0001|Name=EsuBft3642_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1516bp|location=Sequence derived from alignment at Scaffold_372:355228..359011+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCAGCAGCGCGTAGCTGCTGTTCATCTTGAAGTACAATGCGGAACAA
GACCCCATTTGTTGTTTCCAGGCACGCGTTTTCGAGCACACACATGCACA
CGCAAACGTGTACGCACACGCTCTCGAAACAACCCGCCGACTCTGTTCGT
AGATCCATGCATAGCTCATGATACCGATTGGCTGGCAAACCGCTCTGTTT
AGAGGCACAAGAGACACGCGTCGTGCTTCTGCGGTGGCACAGAGCCTGCG
GAAATTTCCCGATCACACCAAGCAGGCCTGGACTACCCCGCTCGTTCGCT
CCCTCCACGGAACCGGCGCGGCACTCCAGCCGGTGACGATCATTGGCCAG
CCCTCGAACGTGGTCAGCGACACCACAATGATCAAGAAAGTGTGGAACAG
CCCCGGCGCGATGCTCCAGGACATCTCCAGCCGCAAGTACGGGTCCGCCC
TCGGCGTCCAAGTCAGCACTGATGTCGAGGAGCTTGCGGGCGAGGAGCCC
CCGTCGAAGAAGGCCAAGGTGTGCACCGGCCCCAACTGCTGCGACGCGCC
CTGCTGCACCATCCCCGGCAAGTGCACGCTCGAAAACTGCACCGCCGAGA
CCTGCATGGCCGAGGAGGACAGTGACGCCGACAGCGCCGTGCAGGAGGTC
GGCGCTACCTTCGGATCGGGCCGCCGCCAGATGTCCACCAAGGGTGCGTA
TGTGTACGGTATCGGCTTGTATTTCTATTTTTCGCACAACTTTCGCGCGA
TCCAGGTTTCAGCCACTATCCAGGCGGGACCCTCGGATGACCACGCAATG
TGGAAGAAGCCGTCGCTCGACAAGGTCATGGATGCGAACAAGAAGTGGGT
GGCCAGAGTGAAGGCCGAGGACCCCGACTTCTTCAAGAGGCTGGCGTCCA
TCCACACCCCAGAGCACTTCTTCATCGGATGCTCCGACTCGCGGCTTTCC
GTCGAGGCGATGCTCGGCTGCGGACCCGGAGAGGTGTTCATCCACCGCAA
CATCGCTAACCAGTTCATGCACAACGATGTCAGCATCCTCGCCTCGCTCC
ACTACGCCGTCGACTACTTGGGGGTGCGTGCGTACCTTGGCGGTCGACCT
ACCGTTTGAGCGCCGGTTGTTGGTATGGTCTGATGTGTGATTAATCCTCT
TCTTTTTATGTTCGGGATCAGGCAGGACATTGAAACGTTAAAGGACATTG
AAACGTTAAATATTCAAGAAGAAAATTGGCCAATGCAGGTGGAGACGCAC
AAAAGCGAAAAATGATGTCCGTGCCTGCCCGCGCGCCGAGAGCCGTGCGG
GGTTTGCATGGGGATACCTTGAGATACCGTAGAATTGTTGGTATGCACAT
TTACATTTGGGAACGGGCAGGACATGCAACATGCATTTTTAAAGCGTGTC
ATTATTGGCGCGCGTTTCTTGTTCTATTTCGTCTATACCACCACCCCTCG
CTCTAGACCGTCTATATATCACCCCAATTGTGCAACTAACAAAACAGGTG
AAGAACATCATCCTGT
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protein sequence of EsuBft3642_3a-0001

>EsuBft3642_3 ID=EsuBft3642_3|Name=EsuBft3642_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MIPIGWQTALFRGTRDTRRASAVAQSLRKFPDHTKQAWTTPLVRSLHGTG
AALQPVTIIGQPSNVVSDTTMIKKVWNSPGAMLQDISSRKYGSALGVQVS
TDVEELAGEEPPSKKAKVCTGPNCCDAPCCTIPGKCTLENCTAETCMAEE
DSDADSAVQEVGATFGSGRRQMSTKGAYVYGIGLYFYFSHNFRAIQVSAT
IQAGPSDDHAMWKKPSLDKVMDANKKWVARVKAEDPDFFKRLASIHTPEH
FFIGCSDSRLSVEAMLGCGPGEVFIHRNIANQFMHNDVSILASLHYAVDY
LGVRAYLGGRPTV
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mRNA from alignment at Scaffold_372:355228..359011+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3642_3a-0001 ID=EsuBft3642_3a-0001|Name=EsuBft3642_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3784bp|location=Sequence derived from alignment at Scaffold_372:355228..359011+ (Ectocarpus subulatus male Bft15b)
GCAGCAGCAGCGCGTAGCTGCTGTTCATCTTGAAGTACAATGCGGAACAA
GACCCCATTTGTTGTTTCCAGGCACGCGTTTTCGAGCACACACATGCACA
CGCAAACGTGTACGCACACGCTCTCGAAACAACCCGCCGACTCTGTTCGT
AGATCCATGCATAGCTCATGATACCGATTGGCTGGCAAACCGCTCTGTTT
AGAGGCACAAGAGACACGCGTCGTGCTTCTGCGGTGGCACAGAGCCTGCG
GAAATTTCCCGATCACACGTGTGCTTGATAACTATTTGGCGAGCGTGGCA
CATACGCGCGTACTCTTCCAACAATACGTGTCACACCAACGAATCCATCG
ATCCTACGCAATCGCGTGCGTTGAAAGCGAAGCCACCGTTTGAAATTTTC
GTGCATGAGCTGCAGACCTATCCCGCTTTTAATCAACTCACGGCGTGCTG
TGCCCTTCTTTCCATAATTGCCCTCTGTTTGTAGAAAGTAAACATACCTC
ACAGAAAGACTCCTGTTCGAGATATGACCTCAGTCGAAAGGGCATGTGGT
GAAAGTCTTTTCAGGAAGTGGGTTGAAACCGACTGGTTTTGCTCGTATGC
CTGTGCATATGGTGATACGATTGATGTTGTGTGTGAACATGCTGCCTACT
CCGCCGCTTTTTAGAATATACGAGCTGAACTCTGCCCTCTCCCTTCCCTT
CGTTGTCCTCATCGATGAACACGACAGCAAGCAGGCCTGGACTACCCCGC
TCGTTCGCTCCCTCCACGGAACCGGCGCGGCACTCCAGCCGGTGACGATC
ATTGGCCAGCCCTCGAACGTGGTCAGCGACACCACAATGATCAAGGTATC
TTGTCTAAACATGCTTGGTTCGGAAAAATACGGACGTTTTGTGTATAGCG
ATGGACGTCATTATAATGTTCACGTGCACTCGGGGGAAAAAACGAGCAAC
AGTTTGGGAATTGATCCACGGTATGGTGCAAATACAGGGAATACAGTAGT
GCTCTCCAGTGGCTTCGGGACAGCCATGGCCGTTTTTTTTTTCTTGCAGT
TTGGTGAACTTGCGTGGGTCGACATGTCATCCGAACGGGTGCCCATCGTT
CGAGACCCGCATTTAGCAATGGGTTGAGTCGAAATTGATCTCTTGCAATG
CGGTAGCATCTGCGAAACGAGTTTCATTCCCGCCGTAGTTTACCGAGGCC
TTGGTAATACACATGTAAATATACAGATAAGGTGTTTTTTATTGTAGTAC
AATAATAATGTTTTGGGTTTGTGGAAGACATACTCATGTCTTGCGGGAAT
TGGAAAAAAAAAAAGGCAGTAGTGTGGACGTTGCGTGTTTTTGATTGGTA
CATGCGGCGGCGGAGTGAAACGGTGGGGGTCACACACAAAGTGGTGCGGC
TGAAGTGATGCTGGGATTGACATCGATATCATCTGCTGCAGGCGGAAGTT
GGCCGCAAGCAGCGTGTGGACTCGTTTCTTGGTGTTGCATTAAATATGCT
CGATTGTGATTTATCTCGTTCGAGATTGTTGCTGAATCTGTTGGGTCGTC
ATCCGATCCCATCCCGCGTTTTTTTCCCGGTCCTCCACACCATTGTGATG
AATCGTTCTTTGGAACAACGCAGAAAGTGTGGAACAGCCCCGGCGCGATG
CTCCAGGACATCTCCAGCCGCAAGTACGGGTCCGCCCTCGGCGTCCAAGT
CAGCACTGATGTCGAGGTGCGTTGCTGGTTCGCGTGCCTCCCAATCTCCT
GGCACGTAGCTGATCGTGAGGCTGCGGATTTTCACAATTCCGAAGCGCGC
GCAAAATAACGGAGACCGCGTTGTCCGTGCATCTAGCGGAGAATAGTAAT
AAGGACCTCGTAATATGAACCCTCTACCTCACCCCAATCCCCAGGAGCTT
GCGGGCGAGGAGCCCCCGTCGAAGAAGGCCAAGGTGTGCACCGGCCCCAA
CTGCTGCGACGCGCCCTGCTGCACCATCCCCGGCAAGTGCACGCTCGAAA
ACTGCACCGCCGAGACCTGCATGGCCGAGGAGGACAGTGACGCCGACAGC
GCCGTGCAGGAGGTCGGCGCTACCTTCGGATCGGGCCGCCGCCAGATGTC
CACCAAGGGTGCGTATGTGTACGGTATCGGCTTGTATTTCTATTTTTCGC
ACAAGTACGTAGAATGCCATTTTGGGAAGGTACTGATGCTTGCACACTCG
GGACCGACCGCGTGGCGACTTCACCCGGAACTTCCTTGAATAGCTGATTT
GTCGCTTTTTTTTTTCCGCCAAAGTTTAGCTGCAAGTTTGATGTAGCTGC
TGTTCGTGTGCACTGGGCAAGAGTTAACTGTAGCTTTCGCGCGATCCAGG
TTTCAGGTAACCAACCTCTGGCCTGCGTACAGTCCATACAAAAGTGACAA
GTCAGTCTCTAGTTCCGCCTTTGACACCCCACGCTCGTCGTGTACCCGTT
GCGTATCCCTCCATGTGACATGACAGCCACTATCCAGGCGGGACCCTCGG
ATGACCACGCAATGTGGAAGAAGCCGTCGCTCGACAAGGTCATGGATGCG
AACAAGAAGTGAGTGATTGATTGTTGAGTTTTTTTTTATCATATTTTTGT
CTCTTCTAAGAAGAGGAGTTGGTCGTGTCAGGGAGAGGAAGGTACTGCTT
GCTTTTTTTATCACGCCATCATCACCTTGGAGTCAAGAACGATGTCACAA
CGTGCAACAAGGCTTGACGCACACCTATCTCTGCATGCTACGTACATCGT
CAGGTGGGTGGCCAGAGTGAAGGCCGAGGACCCCGACTTCTTCAAGAGGC
TGGCGTCCATCCACACCCCAGAGCACTTCTTCATCGGATGCTCCGACTCG
CGGCTTTCCGTCGAGGCGATGCTCGTGAGTTTCTGACACAAATAAAAAAC
GATTTTTTTTGTTTTCTTTTTTTCCACGTCACCGCACCAAGGATTCTTGT
CTTGGTTGGCAGATGCGGGTGCGGAATAGATGAGCAATTGATTCATGTGT
GAGCAGTGTGTGTAGATGTTGCCGAATCGTGGTAGACTTGATGCGCCCGT
CATGTGGTGAAGATCGTAGACCTCTGCTCGGTGTTGACGTCCAGACACTG
GGTGCAGCCACCACCCAAGTCAAATCGTTATCGTTCCTCACGACGATTTT
TGTGTCCACTCAAAACATGTCTCTTTACATGCCCTCCTTCCCCCTCTCCC
TCCCCTTTCCTTTTTTTTTTTTTTTCGCGTCAGGGCTGCGGACCCGGAGA
GGTGTTCATCCACCGCAACATCGCTAACCAGTTCATGCACAACGATGTCA
GCATCCTCGCCTCGCTCCACTACGCCGTCGACTACTTGGGGGTGCGTGCG
TACCTTGGCGGTCGACCTACCGTTTGAGCGCCGGTTGTTGGTATGGTCTG
ATGTGTGATTAATCCTCTTCTTTTTATGTTCGGGATCAGGCAGGACATTG
AAACGTTAAAGGACATTGAAACGTTAAATATTCAAGAAGAAAATTGGCCA
ATGCAGGTGGAGACGCACAAAAGCGAAAAATGATGTCCGTGCCTGCCCGC
GCGCCGAGAGCCGTGCGGGGTTTGCATGGGGATACCTTGAGATACCGTAG
AATTGTTGGTATGCACATTTACATTTGGGAACGGGCAGGACATGCAACAT
GCATTTTTAAAGCGTGTCATTATTGGCGCGCGTTTCTTGTTCTATTTCGT
CTATACCACCACCCCTCGCTCTAGACCGTCTATATATCACCCCAATTGTG
CAACTAACAAAACAGGTGAAGAACATCATCCTGT
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Coding sequence (CDS) from alignment at Scaffold_372:355228..359011+

>EsuBft3642_3a-0001 ID=EsuBft3642_3a-0001|Name=EsuBft3642_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_372:355228..359011+ (Ectocarpus subulatus male Bft15b)
ATGATACCGATTGGCTGGCAAACCGCTCTGTTTAGAGGCACAAGAGACAC
GCGTCGTGCTTCTGCGGTGGCACAGAGCCTGCGGAAATTTCCCGATCACA
CCAAGCAGGCCTGGACTACCCCGCTCGTTCGCTCCCTCCACGGAACCGGC
GCGGCACTCCAGCCGGTGACGATCATTGGCCAGCCCTCGAACGTGGTCAG
CGACACCACAATGATCAAGAAAGTGTGGAACAGCCCCGGCGCGATGCTCC
AGGACATCTCCAGCCGCAAGTACGGGTCCGCCCTCGGCGTCCAAGTCAGC
ACTGATGTCGAGGAGCTTGCGGGCGAGGAGCCCCCGTCGAAGAAGGCCAA
GGTGTGCACCGGCCCCAACTGCTGCGACGCGCCCTGCTGCACCATCCCCG
GCAAGTGCACGCTCGAAAACTGCACCGCCGAGACCTGCATGGCCGAGGAG
GACAGTGACGCCGACAGCGCCGTGCAGGAGGTCGGCGCTACCTTCGGATC
GGGCCGCCGCCAGATGTCCACCAAGGGTGCGTATGTGTACGGTATCGGCT
TGTATTTCTATTTTTCGCACAACTTTCGCGCGATCCAGGTTTCAGCCACT
ATCCAGGCGGGACCCTCGGATGACCACGCAATGTGGAAGAAGCCGTCGCT
CGACAAGGTCATGGATGCGAACAAGAAGTGGGTGGCCAGAGTGAAGGCCG
AGGACCCCGACTTCTTCAAGAGGCTGGCGTCCATCCACACCCCAGAGCAC
TTCTTCATCGGATGCTCCGACTCGCGGCTTTCCGTCGAGGCGATGCTCGG
CTGCGGACCCGGAGAGGTGTTCATCCACCGCAACATCGCTAACCAGTTCA
TGCACAACGATGTCAGCATCCTCGCCTCGCTCCACTACGCCGTCGACTAC
TTGGGGGTGCGTGCGTACCTTGGCGGTCGACCTACCGTTTGA
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