EsuBft3642_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3642_2a-0001
Unique NameEsuBft3642_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:359025..361109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLJ1
ProteomeIdEsuBft3642_2
Protein domainsPTHR11002
Protein domainsIPR001765
Ownerapollo_admin@sb-roscoff.fr
Notecarbonic anhydrase os:emericella nidulans (strain fgsc a4 atcc 38163 cbs nrrl 194 m139) gn:an18 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length390
Hectar predicted targeting categoryother localisation
Evalue3.71e-70
EggNOG OGsCOG0288@1|root,KOG1578@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
EC4.2.1.1
Descriptioncarbonate dehydratase activity
COG categoryP
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0004089
GO0071470
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2aEsuBft3642_2aEctocarpus subulatus male Bft15bgeneScaffold_372 359025..361109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2a-0001EsuBft3642_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 359047..361089 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2a-0001-exonagat-exon-29675Ectocarpus subulatus male Bft15bexonScaffold_372 359025..359139 +
EsuBft3642_2a-0001-exonEsuBft3642_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 359548..359616 +
EsuBft3642_2a-0001-exonagat-exon-29673Ectocarpus subulatus male Bft15bexonScaffold_372 360197..360327 +
EsuBft3642_2a-0001-exonagat-exon-29674Ectocarpus subulatus male Bft15bexonScaffold_372 361035..361109 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2a-0001-exonagat-five_prime_utr-8909Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 359025..359046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2a-0001-cdsEsuBft3642_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 359047..359139 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3642_2a-0001-exonagat-three_prime_utr-14040Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 361090..361109 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3642_2a-0001 ID=EsuBft3642_2a-0001|Name=EsuBft3642_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=390bp|location=Sequence derived from alignment at Scaffold_372:359025..361109+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGGTGGTGTCCGCGCCGCGATGGCCAACAACGACCACGGATTGGTGG
AGAACTGGGTGATGGGCGTGAAGGAGGTGGCGAGGATGCACCAGGACGAG
CTGATGGTGGGTGGGGCCCTGGGTGACGACGAGCTTATCCACCGCCGCCT
GGTCGAGCTCAACGTACAGGAGCAGTGCGTCAAGTTGTTCAACACGCCCA
TCCTCCAGAAGGCGCACGCCGAGAGGGGCGGCCCCCACGTCCACGCCGTG
ATCTTCGACATGGCCGAGGGGCTCATCAAGGAGCTCGATGTCGACCTCAA
GGCGCTCGTGAAGAGGACCTCGCACTTCCAGTCGATGTACGACTTCTCCG
CCCCCGTGGCTGCTCAGTAGCTTGGCGATTACCACGACGA
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protein sequence of EsuBft3642_2a-0001

>EsuBft3642_2 ID=EsuBft3642_2|Name=EsuBft3642_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MANNDHGLVENWVMGVKEVARMHQDELMVGGALGDDELIHRRLVELNVQE
QCVKLFNTPILQKAHAERGGPHVHAVIFDMAEGLIKELDVDLKALVKRTS
HFQSMYDFSAPVAAQ
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mRNA from alignment at Scaffold_372:359025..361109+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3642_2a-0001 ID=EsuBft3642_2a-0001|Name=EsuBft3642_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2085bp|location=Sequence derived from alignment at Scaffold_372:359025..361109+ (Ectocarpus subulatus male Bft15b)
GTGTGGTGGTGTCCGCGCCGCGATGGCCAACAACGACCACGGATTGGTGG
AGAACTGGGTGATGGGCGTGAAGGAGGTGGCGAGGATGCACCAGGACGAG
CTGATGGTGGGTGGGGTCATGAAGATGTAAAGAGCCTGCGTTGTACTCGA
AAAACACTGTGGTGTTTCCCAGCCTTCCCCTACAGCTACATCAGAAAATG
TGTTCGATTTTGTGACCACGGAAGACATCATTAGTATGGTGTTGGAAAGT
GCAGAGGCAGGTTGTCGAGAGCACAATTACAACAGCGACTACTACGGTAA
CTCCACACCCCTCCTCGGAACAACGAAGAGTGAAATGTGTTGTTGGTCAC
TGGTTGATCGGAAACCTTTTCATGTTTGTTGTACGTGGAGCTGTAACTCC
GTATGTTTCCAATACAAAAAAAAATGTAGCTTGTTGTACGTGGAGCTGTA
CCGTATCTTTCTATGTTGTACAATAGCATGTCTCGGCGTCTTACCATCCT
TCACAACGTGTTGGTTCTTGCAGGCCCTGGGTGACGACGAGCTTATCCAC
CGCCGCCTGGTCGAGCTCAACGTACAGGAGCAGTGCGTCAAGGTGAGCAT
AGGATGAGTAGCTTTGGCTGTTTTGTGTTGTTTTTCATTTACGTTAACAT
GTCGGATACAACATGCAGTCGGGGAAGTTGGGTACGATTTTTGATTGATC
GCGAAGGCGGTCTTAAAAGTAGTCCTTTTGATCGACGGAAAACGTCATGG
TGGTGGCACATGTACGTTCGTGTGCCACCACCACGTGAGTGTTGCCCGGT
TTGGAGAATCATGTCGCTATGCCATTCGATGTACGGCCCCCCTTCGTAGA
CTCTCTGCTGCCGTCCCTTGCGCCCCCCTCTTGGAATAATTGCTGCCGTT
GCTGTAGCTGTTCAACAGTAGCCTTCACAGGGTTCTATATTCAGCAAACA
TGTTGGGAGCAAGCATGCAATCGGGGAAGTGGGGTGAGGGTTAGGGTTAT
AGGGGATAGGTCCTGCGTACCCACTCCCTGTTCTATTTCCTCATGATCCT
TAATTTCCCGCAAAGGCGGTCCTGTTTAACGCTGACGTAGATCGTCTCGT
CTCTTGACGCCGTTCCGTTCCGTCGTCTGGTTGTTTGTTTCACCCCCTTG
CAAAACATTTTCCCTGCCGCAGTTGTTCAACACGCCCATCCTCCAGAAGG
CGCACGCCGAGAGGGGCGGCCCCCACGTCCACGCCGTGATCTTCGACATG
GCCGAGGGGCTCATCAAGGAGCTCGATGTCGACCTCAAGGCGCTCGTGAA
GAGGTGAGAAGAACGAACAGAGGTTTTCGAGGCCGGAGAGCAAAAAGACA
AGGACGGCTTTCTTTTCAGTCGACGTGAAGCCGGCCTTGCTTGTTCCCTT
GTTTTGAGATAGGGTATTGGCGATGTGTAACCGCCACAGGATTTGTCAGT
GTTTTATCTTATTGCACCCGACCCCTGGTCAGATGGTGAATAATCACCGT
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NCCCCCCCTACTCATATTTTTTGGCCCCTTGCTCTCCTCGTCGCGCCTCA
ATCTCTTCAGGACCTCGCACTTCCAGTCGATGTACGACTTCTCCGCCCCC
GTGGCTGCTCAGTAGCTTGGCGATTACCACGACGA
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Coding sequence (CDS) from alignment at Scaffold_372:359025..361109+

>EsuBft3642_2a-0001 ID=EsuBft3642_2a-0001|Name=EsuBft3642_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_372:359025..361109+ (Ectocarpus subulatus male Bft15b)
ATGGCCAACAACGACCACGGATTGGTGGAGAACTGGGTGATGGGCGTGAA
GGAGGTGGCGAGGATGCACCAGGACGAGCTGATGGTGGGTGGGGCCCTGG
GTGACGACGAGCTTATCCACCGCCGCCTGGTCGAGCTCAACGTACAGGAG
CAGTGCGTCAAGTTGTTCAACACGCCCATCCTCCAGAAGGCGCACGCCGA
GAGGGGCGGCCCCCACGTCCACGCCGTGATCTTCGACATGGCCGAGGGGC
TCATCAAGGAGCTCGATGTCGACCTCAAGGCGCTCGTGAAGAGGACCTCG
CACTTCCAGTCGATGTACGACTTCTCCGCCCCCGTGGCTGCTCAGTAG
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