EsuBft363_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft363_12a-0001
Unique NameEsuBft363_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:106904..108381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFH3
ProteomeIdEsuBft363_12
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length46
Hectar predicted targeting categorysignal anchor
Evalue4.15e-62
EggNOG OGsCOG5520@1|root,KOG2566@2759|Eukaryota
Ec32 ortholog descriptionBeta-glucosidase, family GH30
Ec32 orthologEc-04_002190.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00059,RC00451
KEGG koko:K01201
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142
GOsGO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EC3.2.1.45
Descriptionglucosylceramidase activity
COG categoryM
CAZyGH30
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft363_12aEsuBft363_12aEctocarpus subulatus male Bft15bgeneScaffold_499 106904..108381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft363_12a-0001-exonEsuBft363_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 106904..107020 +
EsuBft363_12a-0001-exonagat-exon-18044Ectocarpus subulatus male Bft15bexonScaffold_499 107172..107260 +
EsuBft363_12a-0001-exonagat-exon-18043Ectocarpus subulatus male Bft15bexonScaffold_499 108126..108381 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft363_12a-0001-exonagat-five_prime_utr-8902Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 106904..106963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft363_12a-0001-cdsEsuBft363_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 106964..107020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft363_12a-0001EsuBft363_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 106964..108381 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft363_12a-0001 ID=EsuBft363_12a-0001|Name=EsuBft363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=462bp|location=Sequence derived from alignment at Scaffold_499:106904..108381+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTGTCGGAACGGCGTTAGCACGGATAGCTAACCACGCCGAGCCCACA
TCACAGCATCATGCAGGGCTACGACAGGATCCCGGAGGGTGCTTCACCAG
GGGAGCCGGATGTGCAGGCGGCGCGCGAGGAGGGCAATGTACGAACCCCC
CTACGCAGCAGCAGCGGCTCTGCGGTAGAGGAACAAGGCGGTGAGACTCG
TCACAGGAGGCTCGCCGTTGTGGTACCTATCGGAGTTCTCAGCGTGCTCG
GCGTTCTTTTGATAACGTCGGGGGGTGGGAGTCGACAGCTGCGGCAGGAG
CCGGAAGCTGGTTCGCCCGCCAGCCTTGAAAGCCAGCACTCGGTTGCTGG
GGTGTCTGTGTTCGAGAGCTCCTTGCACGATGGGACGAGGCTTGACCAGG
GCTTCCCTGCCCCCGCGAGCTTGAAACAGGTCAGGCGTCGATTCATGAGT
TTTGTACCGTAG
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protein sequence of EsuBft363_12a-0001

>EsuBft363_12 ID=EsuBft363_12|Name=EsuBft363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=133bp
MQGYDRIPEGASPGEPDVQAAREEGNVRTPLRSSSGSAVEEQGGETRHRR
LAVVVPIGVLSVLGVLLITSGGGSRQLRQEPEAGSPASLESQHSVAGVSV
FESSLHDGTRLDQGFPAPASLKQVRRRFMSFVP
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mRNA from alignment at Scaffold_499:106904..108381+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft363_12a-0001 ID=EsuBft363_12a-0001|Name=EsuBft363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1478bp|location=Sequence derived from alignment at Scaffold_499:106904..108381+ (Ectocarpus subulatus male Bft15b)
CTGGTGTCGGAACGGCGTTAGCACGGATAGCTAACCACGCCGAGCCCACA
TCACAGCATCATGCAGGGCTACGACAGGATCCCGGAGGGTGCTTCACCAG
GGGAGCCGGATGTGCAGGTGCCCTCCTGATATCAAGTCGCTCGCGAAACT
CGAGTTGTTCTCGTGACAATTGACCCTTTCATGACCGCAAACTGGCTGCC
TGCTGCAACGTGTTCATTCGTTCTTGCCAACTTGCTGTTGTTGCTGCTGT
CGCCGGGATGGATCGCAGGCGGCGCGCGAGGAGGGCAATGTACGAACCCC
CCTACGCAGCAGCAGCGGCTCTGCGGTAGAGGAACAAGGCGGTGAGACTC
GTCACAGGTGAGAGGTCGCTGTTCGGGACCATTTTTCAGATCGATCAGCG
GTGCAATTTCGGCGGACTGCTGTCGAGTTGTGCACCAGAGAACTGTCGCG
CAGGCGGCATGAGCTCACCGTGGTGGGGGGTTCGCCACGGCCTCGTCGCT
CTTTTCCGTTGCTGCCCAACGGGAGTTTCGTCGTGGGGGTGCTTTTGAGT
CAATTAGTCCAGATTGCAGTTGGAAAGTACCAGAGCTGGGTGCAGACTGC
TCAAGTCAACCATTTGTGACTCAACCACCGCTAACAACTCTGCACTCGCG
GGGCATGCGTATGCGTGCATGCACGAAACCATACGGTGGTAAATGTGTTG
CGTTCGCTTGTCTCAGCCCGACACTCCTGTATATTGTGACGTCTCAACTC
CTGTAGATTGTGATAACTCAACTGATGTTGTTGTGTTACTAGGCCCCACT
CGGTAAATGCAAGGGTTGCATGTCTTGTGACGTGTGGCACGCTCCTGGTC
CAGTGGTAAAACACGCAGTACGAGCACGGCTGCTGCGCTGTTCTTTGCTC
CTTCCACACCTGCCACCACAACTGACCGTTGCCGAGCCGACTGTGGGTAC
GGTATTATTTTCGTGCGATCAATCAAGGACCATGTCTCCCCCGCAAACAG
GTCATGGGCGAGCCCCGCCAGACCCCCATGTCTCCGTTTCCCTGCTGTCC
CAAACACAGTAGCTCGACCACCTCCACCGCCTTCGCTTTTGGAACCCTCG
TCCAACTAAGTCTTATGGAGGGTTTCCTAACCTCAAAGATGTAGGACCGT
TGGTTTCAATACACAGCTTCTCCAGTATTCATGACTGACCTCGCTACGCA
CCACCGGCGTCCCTCCCAGCAGGAGGCTCGCCGTTGTGGTACCTATCGGA
GTTCTCAGCGTGCTCGGCGTTCTTTTGATAACGTCGGGGGGTGGGAGTCG
ACAGCTGCGGCAGGAGCCGGAAGCTGGTTCGCCCGCCAGCCTTGAAAGCC
AGCACTCGGTTGCTGGGGTGTCTGTGTTCGAGAGCTCCTTGCACGATGGG
ACGAGGCTTGACCAGGGCTTCCCTGCCCCCGCGAGCTTGAAACAGGTCAG
GCGTCGATTCATGAGTTTTGTACCGTAG
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Coding sequence (CDS) from alignment at Scaffold_499:106904..108381+

>EsuBft363_12a-0001 ID=EsuBft363_12a-0001|Name=EsuBft363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=402bp|location=Sequence derived from alignment at Scaffold_499:106904..108381+ (Ectocarpus subulatus male Bft15b)
ATGCAGGGCTACGACAGGATCCCGGAGGGTGCTTCACCAGGGGAGCCGGA
TGTGCAGGCGGCGCGCGAGGAGGGCAATGTACGAACCCCCCTACGCAGCA
GCAGCGGCTCTGCGGTAGAGGAACAAGGCGGTGAGACTCGTCACAGGAGG
CTCGCCGTTGTGGTACCTATCGGAGTTCTCAGCGTGCTCGGCGTTCTTTT
GATAACGTCGGGGGGTGGGAGTCGACAGCTGCGGCAGGAGCCGGAAGCTG
GTTCGCCCGCCAGCCTTGAAAGCCAGCACTCGGTTGCTGGGGTGTCTGTG
TTCGAGAGCTCCTTGCACGATGGGACGAGGCTTGACCAGGGCTTCCCTGC
CCCCGCGAGCTTGAAACAGGTCAGGCGTCGATTCATGAGTTTTGTACCGT
AG
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