EsuBft3634_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3634_3a-0001
Unique Name	EsuBft3634_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_457	contig	Scaffold_457:46031..49610 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3634_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	221
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a	EsuBft3634_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_457 46031..49610 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a-0001	EsuBft3634_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_457 49353..49562 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a-0001-exon	agat-exon-76541	Ectocarpus subulatus male Bft15b	exon	Scaffold_457 46031..46043 -
EsuBft3634_3a-0001-exon	agat-exon-76540	Ectocarpus subulatus male Bft15b	exon	Scaffold_457 46140..46906 -
EsuBft3634_3a-0001-exon	agat-exon-76539	Ectocarpus subulatus male Bft15b	exon	Scaffold_457 47986..48793 -
EsuBft3634_3a-0001-exon	agat-exon-76538	Ectocarpus subulatus male Bft15b	exon	Scaffold_457 48882..49146 -
EsuBft3634_3a-0001-exon	EsuBft3634_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_457 49254..49610 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a-0001-exon	agat-three_prime_utr-14012	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_457 46031..46043 -
EsuBft3634_3a-0001-exon	agat-three_prime_utr-14013	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_457 46140..46906 -
EsuBft3634_3a-0001-exon	agat-three_prime_utr-14014	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_457 47986..48793 -
EsuBft3634_3a-0001-exon	agat-three_prime_utr-14015	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_457 48882..49146 -
EsuBft3634_3a-0001-exon	agat-three_prime_utr-14016	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_457 49254..49352 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a-0001-cds	EsuBft3634_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_457 49353..49562 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3634_3a-0001-exon	agat-five_prime_utr-8898	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_457 49563..49610 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_457:46031..49610-
coding sequence from alignment at Scaffold_457:46031..49610-

spliced messenger RNA

>EsuBft3634_3a-0001 ID=EsuBft3634_3a-0001|Name=EsuBft3634_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2210bp|location=Sequence derived from alignment at Scaffold_457:46031..49610- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGGAGAGAGCAGCAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGAT
GTGGAGGTCCCTGCTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTC
TCTTCGTAGTACGTTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGCTG
GAGACACTGGTGAGAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGG
TCGGGCGGAGAATGCGGCACGGCGGAAGGGTCGTGCCCACTGTTCTGCCT
TGCTGTAGTAGCGGGCGGGGCGCACAGAAGTCGCCGGAATTCATGGTGCA
ACAGAACGGACGGAGGGGCCGTGAAGTCGCGCAGTTTTGGCGCGCACTCC
ATCTGCGGCGGTGGAGCATCAGGACGGTAGAGAGACCGTTGGGCAGGATT
GCCGGAGACACTCAACCATGGATCGACCGCGCGACGGCGCGGGGGGGGGT
GGGCGCCGTACATGCTTGATGCTGGCGGTGTTTTGTTAAGTCGATCCAAG
GCCGGCAGTAGAGGCCGGGTACGCCCTACCACGGTTGACACGCGCGACGG
CGCGTCGGGGGGTGGGCGCCGATCACGCGGGAGCGGGCGGCGTTTTTTGA
CCACAGCACGGACGGAGGGGCCCCGTGGCTGTTCTGCCTCGTCATAGGAG
CGAGGGGAGTAGCATATTAAGTCGCGCGGAGGTGGCGCGCAACCATCAGC
CGGAGGTGGGTGGTGGAACGGGGCACAGCTAAGTGGGTGTCATCAAAGTC
GCGTGGGGAGGTGCCGCGCGCATTTCATCAGTCGGGAACGAGCGGTGGAG
ACAAGAATGCGTCAGGATGGACGTGAGGAATTAAAGGCGTGCTTCGCCAT
CAAGATGTGTTGGTGGAGTAGTTGGAATAAGCTTGGATTTTGTTGTCTTG
TTTTGTGTGGAGGTACTAGTTTGAGGTCGTGATGAAATCAAGCAACTTGT
ATTCGAGGAAATTCTGTTCACTGTTGCGTGTTTCTTTCCGCCGTCATTTG
CGCGTTGTCTTGCACCCAAATCGTGGTTGTTCTGAATGTTTGTGTTCGTC
GTTATGCCATTAGTGCATCCTTCGCCGGTGACGTTGTGTTGCTGGTGATG
ATGGCAAAGTGTCGGGGGGTAGAGACGTTCACGTTGGTAGAATTTGCCAC
CATCACTCATGTGTGGGGGCTACGCGGTTATATGTGACCCACGGCCTAAG
TAGGAGGCGCAACAAGTGTATTGTTTACCTGAAATGTTGAAGAACAAGGG
AGGGTGGAAACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTAC
GCCCGGTCTTGGTATTATGCAACTTGACAGGTTGGTGTGTCGGGCAGGTA
TGCATTTGTTGGTGGAAGTCGATTTTGTTTTCACGTACGGAAGCATGTTG
GTTGTGTCTGTTTTGGGAAGCGACATCTAGGTGATGGCCATGTGCGTGTT
CCTCTGGGCGCCGGTGTTGCGCAAGGGAGGGCACTAGGCTTAGGTTCCTG
GTGTGCTTGTCTATAATGCAGACAGCGTAGATGCTTGGGGTTCGTAGTAC
AGCGTTACCAAGTTGTGGGGGGGCGTTTGTGTTTTGCGTAGTTGTGCTTG
AAGGTTCAGTAGCAAGTTGATGTATCCTTGATTGAAGGAGAACTGAGGAT
TGATTTGGTAGTTTGCAGATGGTGGACCTTGTTTGAAGCAGGCTACATTC
GGCAGGTTCTGTATTTCTCAAAAGCGGGCATCCTTTGGAGAATCGAGTTT
GATTGGTTTTTCAGTTGGAAACAGGTCATGATTTTGAGTTCGTGTAGGAT
TGCAGATGGTTGAACCGAAGGCAGGGAGAACGTACCTGTTCGATGCAGTT
TTCGTGTGGAATGCAGATAGACAGGGAGGGCGTTGCCTGTATGTGTGTGA
CACCTGAAGAGTCAGTTGGTGCTGCACAGCAAGGAGTTCGTTCCATCATG
TCGGAAGGATTTGTCAGAGGCGTTGCTCGAGGTAGTAGAGCGTTGCCTAG
AATTTGTAATCCGAGCGTCTGGAGTGGTTTTATCTTTGTCTTCTTGCAGT
ACGGCCGTTGGAATCATTGGTGATATGGACGGCTATTGGATTTTGTTTGA
GCCGTTGGAATCTTTCGTGATATGATCGGCGTGAGGCGTTGAATTTCTGA
GGGGTTTTGATCCGGTGGCCGGGTCTTCCCTTTACTTTTGGTTTGTCTCG
AAAAGTAGCC

protein sequence of EsuBft3634_3a-0001

>EsuBft3634_3 ID=EsuBft3634_3|Name=EsuBft3634_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MWRSLLQVGLVHSKTPTLFVVRSAVLAYSSLLPLETLVRVSQQPINPFRG
GRAENAARRKGRAHCSALL

mRNA from alignment at Scaffold_457:46031..49610-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3634_3a-0001 ID=EsuBft3634_3a-0001|Name=EsuBft3634_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3580bp|location=Sequence derived from alignment at Scaffold_457:46031..49610- (Ectocarpus subulatus male Bft15b)
GAGGAGAGAGCAGCAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGAT
GTGGAGGTCCCTGCTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTC
TCTTCGTAGTACGTTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGCTG
GAGACACTGGTGAGAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGG
TCGGGCGGAGAATGCGGCACGGCGGAAGGGTCGTGCCCACTGTTCTGCCT
TGCTGTAGTAGCGGGCGGGGCGCACAGAAGTCGCCGGAATTCATGGTGCA
ACAGAACGGACGGAGGGGCCGTGAAGTCGCGCAGTTTTGGCGCGCACTCC
ATCTGCGGTAAGGCGGTGGATCAACACGAAAGGCGTTAGAGTAATCGGCG
CAACAGAACGGACGGAGGGGCCGTGAAGTCGCGCAATGTTGGCGCGCATT
CCATCTGCGGTAAGGCGGTGGAGCATCAGGACGGTAGAGAGACCGTTGGG
CAGGATTGCCGGAGACACTCAACCATGGATCGACCGCGCGACGGCGCGGG
GGGGGGTGGGCGCCGTACATGCTTGATGCTGGCGGTGTTTTGTTAAGTCG
ATCCAAGGCCGGCAGTAGAGGCCGGGTACGCCCTACCACGGTTGACACGC
GCGACGGCGCGTCGGGGGGTGGGCGCCGATCACGCGGGAGCGGGCGGCGT
TTTTTGACCACAGCACGGACGGAGGGGCCGTGGCTGCTTTGCCTCGTCGT
CGGAACGGGGGGGGCAGCATTATAAGGCGCGCGGAGGTGGCGCGCAAACC
CAGCATGGACGGAGGAGCCGTGGCTGTTCTGCCTCGTCATAGGAGCGAGG
GGAGTAGCATATTAAGTCGCGCGGAGGTGGCGCGCAACCATCAGCCGGAG
GTGGGTGGTGGAACGGGGCACAGCTAAGTGGGTGTCATCAAAGTCGCGTG
GGGAGGTGCCGCGCGCATTTCATCAGTCGGGAACGAGCGGTGGAGACAAG
AATGCGTCAGGATGGACGTGAGGAATTAAAGGCGTGCTTCGCCATCAAGA
TGTGTTGGTGGAGTAGTTGGAATAAGCTTGGATTTTGTTGTCTTGTTTTG
TGTGGAGGTACTAGTTTGAGGTCGTGATGAAATCAAGCAACTTGTATTCG
AGGAAATTCTGTTCACTGTTGCGTGTTTCTTTCCGCCGTCATTTGCGCGT
TGTCTTGCACCCAAATCGTGGTTGTTCTGAATGTTTGTGTTCGTCGTTAT
GCCATTAGTGCATCCTTCGCCGGTGACGTTGTGTTGCTGGTGATGATGGC
AAAGTGTCGGGGGGTAGAGACGTTCACGTTGGTAGAATTTGCCACCATCA
CTCATGTGTGGGGGCTACGCGGTTATATGTGACCCACGGCCTAAGTAGGA
GGCGCAACAAGTGTATTGTTTACCTGAAATGTTGAAGAACAAGGGAGGGT
GGAAACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTACGCCCG
GTCTTGGTATTATGCAACTTGACAGGTTGGTGTGTCGGGCAGGTATGCAT
TTGTTGGTGGAAGTCGATTTTGTTTTCACGTACGGAAGCATGTTGGTTGT
GTCTGTTTTGGGAAGCGACATCTAGGTGATGGCCATGTGCGTGTTCCTCT
GGGCGCCGGTGTTGCGCAAGGGAGGGCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
GTTTTCACGTACGGAAGCATGTTGGTTGTGTCTGTTTTGGGAAGCGACAT
CTAGGTGATGGCCATGTGCGTGTTCCTCTGGGCGCCGGTGTTGCGCAAGG
GAGGGCACTAGGCTTAGGTTCCTGGTGTGCTTGTCTATAATGCAGACAGC
GTAGATGCTTGGGGTTCGTAGTACAGCGTTACCAAGTTGTGGGGGGGCGT
TTGTGTTTTGCGTAGTTGTGCTTGAAGGTTCAGTAGCAAGTTGATGTATC
CTTGATTGAAGGAGAACTGAGGATTGATTTGGTAGTTTGCAGATGGTGGA
CCTTGTTTGAAGCAGGCTACATTCGGCAGGTTCTGTATTTCTCAAAAGCG
GGCATCCTTTGGAGAATCGAGTTTGATTGGTTTTTCAGTTGGAAACAGGT
CATGATTTTGAGTTCGTGTAGGATTGCAGATGGTTGAACCGAAGGCAGGG
AGAACGTACCTGTTCGATGCAGTTTTCGTGTGGAATGCAGATAGACAGGG
AGGGCGTTGCCTGTATGTGTGTGACACCTGAAGAGTCAGTTGGTGCTGCA
CAGCAAGGAGTTCGTTCCATCATGTCGGAAGGATTTGTCAGAGGCGTTGC
TCGAGGTAGTAGAGCGTTGCCTAGAATTTGTAATCCGAGCGTCTGGAGTG
GTTTTATCTTTGTCTTCTTGCAGTACGGCCGTTGGAATCATTGGTGATAT
GGACGGCTATTGGATTTTGTTTGAGCCGTTGGAATCTTTCGTGATATGAT
CGGCGTGAGGCGTTGAATTTCTGAGGGGTTTTGATCCGGTGGCCGGGTCT
TCCCTTTACTTTTGGTTTGTCGTTGTATTTCGGTTTTTCGGACGCATTTT
CGACGCACTAGAGGTTCTTCACTGGCGTAAAGAACCAGGGAGGTTATTCG
TGCGAAGAAGTAGATAGTCGAAAAGTAGCC

Coding sequence (CDS) from alignment at Scaffold_457:46031..49610-

>EsuBft3634_3a-0001 ID=EsuBft3634_3a-0001|Name=EsuBft3634_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_457:46031..49610- (Ectocarpus subulatus male Bft15b)
ATGTGGAGGTCCCTGCTGCAGGTGGGTTTGGTGCATTCCAAGACACCAAC
TCTCTTCGTAGTACGTTCGGCAGTGCTTGCGTACAGCAGTCTGCTGCCGC
TGGAGACACTGGTGAGAGTGTCACAGCAACCGATCAATCCATTCAGGGGA
GGTCGGGCGGAGAATGCGGCACGGCGGAAGGGTCGTGCCCACTGTTCTGC
CTTGCTGTAG