EsuBft3623_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3623_3a-0001
Unique NameEsuBft3623_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:173801..175415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3623_3
Protein domainsPF13358
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length122
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3623_3aEsuBft3623_3aEctocarpus subulatus male Bft15bgeneScaffold_544 173801..175415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3623_3a-0001EsuBft3623_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 173997..175415 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3623_3a-0001-exonagat-exon-65041Ectocarpus subulatus male Bft15bexonScaffold_544 173801..174026 +
EsuBft3623_3a-0001-exonagat-exon-65042Ectocarpus subulatus male Bft15bexonScaffold_544 174095..174244 +
EsuBft3623_3a-0001-exonEsuBft3623_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 174304..174409 +
EsuBft3623_3a-0001-exonagat-exon-65040Ectocarpus subulatus male Bft15bexonScaffold_544 174670..175415 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3623_3a-0001-exonagat-five_prime_utr-8879Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 173801..173996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3623_3a-0001-cdsEsuBft3623_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 173997..174026 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1228bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCAGCAGGAATACATTGTGCTGTTGTA
GAGCAGTTCTTTACAGCAGTTTTTTACAGCACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCTGTGCAATGTCCAAGTTGCGCGCACTTTCAAGATCGGC
CACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTT
GTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGATGATG
GGCGACGCCGCCTCACCGNGCCGGTCCCGTCCCACCGTTCGGCAGGAGGG
CTGCTGAGTAGGCTCGGCTACAAGCGTCGTGGAGGCAGGATCAAAACGCC
ACCGTTAAACGCCGAAAGACTTGCTCGCATTCGCAAACGGATTATTTTTG
TTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTG
CCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGG
GGCCAAGTCGATGAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTG
AGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGG
AACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGA
GTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGT
TCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCG
TCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAG
CCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTC
GTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGG
AAGGCAGCCGATTGTTCGAAGCTGGTTCACCACGCCATTAGAGAGATGAA
AAAGTGGGTCAAGGACCGTAATGGAGTGCTTTCTGGTACGATAGGCAGCC
TCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGAT
GTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGG
TGATGGCAGCGACGAGGTTGAACCATGA
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protein sequence of EsuBft3623_3a-0001

>EsuBft3623_3 ID=EsuBft3623_3|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=343bp
MCDVSLCNVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKD
DGRRRLTXPVPSHRSAGGLLSRLGYKRRGGRIKTPPLNAERLARIRKRII
FVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSMRVRRKEGEQGV
VEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVV
TFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQ
IRKGWYGDKEWPGQEGGWKAADCSKLVHHAIREMKKWVKDRNGVLSGTIG
SLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEWGDGSDEVEP
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mRNA from alignment at Scaffold_544:173801..175415+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1615bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCAGCAGGAATACATTGTGCTGTTGTA
GAGCAGTTCTTTACAGCAGTTTTTTACAGCACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCTGTGCAATGTCCAAGTGAACTGACCTTATTCATAAACG
ATGTTGCAATATTTTCTCTTCTCTGGACCTCTCTATGCTGGCAGGTTGCG
CGCACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAACAACCACTG
GTGGGATCACCGCCAGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGA
CGGCAAAGAAGGATGATGGGCGACGCCGCCTCACCGNGCCGGTCGTCAAG
TCTTTCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACATGGAG
CAGCCGTCCCACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGCTACAA
GCGTCGTGGAGGCAGGATCAAAACGCCACCGTTAAACGCCGAAAGACTTG
CTCGCATTCGTCGGTTTCTTGTTGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
GCGATCCCGGAGTTCAAAGGCAAACGGATTATTTTTGTTCTTGACAACGC
CTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAAACCAACA
CCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAAGTCGATG
AGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACAACTTCGA
GGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGGGAGGGCG
GTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACATCCACCTC
AATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGAGGAAAAA
GGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTTCAACCGA
TCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAACTTTGAG
TTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAGGTTGGTA
CGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAGGCAGCCGATT
GTTCGAAGCTGGTTCACCACGCCATTAGAGAGATGAAAAAGTGGGTCAAG
GACCGTAATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAAAGCCGGA
CGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAGGAAGGGG
TAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGGCAGCGAC
GAGGTTGAACCATGA
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Coding sequence (CDS) from alignment at Scaffold_544:173801..175415+

>EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1032bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)
ATGTGCGATGTCTCTCTGTGCAATGTCCAAGTTGCGCGCACTTTCAAGAT
CGGCCACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCC
AGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGAT
GATGGGCGACGCCGCCTCACCGNGCCGGTCCCGTCCCACCGTTCGGCAGG
AGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTGGAGGCAGGATCAAAA
CGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGCAAACGGATTATT
TTTGTTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAA
AGTGCCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGT
TTGGGGCCAAGTCGATGAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTT
GTTGAGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGC
AGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTC
GGGAGTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTG
ACGTTCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACAT
GCCGTCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACG
TCAGCCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAG
ATTCGTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGG
GTGGAAGGCAGCCGATTGTTCGAAGCTGGTTCACCACGCCATTAGAGAGA
TGAAAAAGTGGGTCAAGGACCGTAATGGAGTGCTTTCTGGTACGATAGGC
AGCCTCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGG
TGATGTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAAT
GGGGTGATGGCAGCGACGAGGTTGAACCATGA
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