Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft3623_3 |
| Protein domains | PF13358 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 122 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1228bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCAGCAGGAATACATTGTGCTGTTGTA
GAGCAGTTCTTTACAGCAGTTTTTTACAGCACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCTGTGCAATGTCCAAGTTGCGCGCACTTTCAAGATCGGC
CACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTT
GTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGATGATG
GGCGACGCCGCCTCACCGNGCCGGTCCCGTCCCACCGTTCGGCAGGAGGG
CTGCTGAGTAGGCTCGGCTACAAGCGTCGTGGAGGCAGGATCAAAACGCC
ACCGTTAAACGCCGAAAGACTTGCTCGCATTCGCAAACGGATTATTTTTG
TTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTG
CCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGG
GGCCAAGTCGATGAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTG
AGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGG
AACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGA
GTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGT
TCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCG
TCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAG
CCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTC
GTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGG
AAGGCAGCCGATTGTTCGAAGCTGGTTCACCACGCCATTAGAGAGATGAA
AAAGTGGGTCAAGGACCGTAATGGAGTGCTTTCTGGTACGATAGGCAGCC
TCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGAT
GTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGG
TGATGGCAGCGACGAGGTTGAACCATGA back to topprotein sequence of EsuBft3623_3a-0001 >EsuBft3623_3 ID=EsuBft3623_3|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=343bp
MCDVSLCNVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKD
DGRRRLTXPVPSHRSAGGLLSRLGYKRRGGRIKTPPLNAERLARIRKRII
FVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSMRVRRKEGEQGV
VEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVV
TFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQ
IRKGWYGDKEWPGQEGGWKAADCSKLVHHAIREMKKWVKDRNGVLSGTIG
SLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEWGDGSDEVEP back to topmRNA from alignment at Scaffold_544:173801..175415+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1615bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCAGCAGGAATACATTGTGCTGTTGTA
GAGCAGTTCTTTACAGCAGTTTTTTACAGCACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCTGTGCAATGTCCAAGTGAACTGACCTTATTCATAAACG
ATGTTGCAATATTTTCTCTTCTCTGGACCTCTCTATGCTGGCAGGTTGCG
CGCACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAACAACCACTG
GTGGGATCACCGCCAGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGA
CGGCAAAGAAGGATGATGGGCGACGCCGCCTCACCGNGCCGGTCGTCAAG
TCTTTCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACATGGAG
CAGCCGTCCCACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGCTACAA
GCGTCGTGGAGGCAGGATCAAAACGCCACCGTTAAACGCCGAAAGACTTG
CTCGCATTCGTCGGTTTCTTGTTGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
GCGATCCCGGAGTTCAAAGGCAAACGGATTATTTTTGTTCTTGACAACGC
CTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAAACCAACA
CCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAAGTCGATG
AGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACAACTTCGA
GGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGGGAGGGCG
GTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACATCCACCTC
AATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGAGGAAAAA
GGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTTCAACCGA
TCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAACTTTGAG
TTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAGGTTGGTA
CGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAGGCAGCCGATT
GTTCGAAGCTGGTTCACCACGCCATTAGAGAGATGAAAAAGTGGGTCAAG
GACCGTAATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAAAGCCGGA
CGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAGGAAGGGG
TAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGGCAGCGAC
GAGGTTGAACCATGA back to topCoding sequence (CDS) from alignment at Scaffold_544:173801..175415+ >EsuBft3623_3a-0001 ID=EsuBft3623_3a-0001|Name=EsuBft3623_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1032bp|location=Sequence derived from alignment at Scaffold_544:173801..175415+ (Ectocarpus subulatus male Bft15b)
ATGTGCGATGTCTCTCTGTGCAATGTCCAAGTTGCGCGCACTTTCAAGAT
CGGCCACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCC
AGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGAT
GATGGGCGACGCCGCCTCACCGNGCCGGTCCCGTCCCACCGTTCGGCAGG
AGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTGGAGGCAGGATCAAAA
CGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGCAAACGGATTATT
TTTGTTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAA
AGTGCCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGT
TTGGGGCCAAGTCGATGAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTT
GTTGAGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGC
AGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTC
GGGAGTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTG
ACGTTCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACAT
GCCGTCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACG
TCAGCCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAG
ATTCGTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGG
GTGGAAGGCAGCCGATTGTTCGAAGCTGGTTCACCACGCCATTAGAGAGA
TGAAAAAGTGGGTCAAGGACCGTAATGGAGTGCTTTCTGGTACGATAGGC
AGCCTCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGG
TGATGTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAAT
GGGGTGATGGCAGCGACGAGGTTGAACCATGA back to top
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