Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft359_11 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 218 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2187bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGACTGCTGCTGCAA
AAAGTGGAGACTATCCGCAAGGAGCCCAACACCTATGTTCGGGTGCTGCT
CGAGCGCGTGGACGAGGGCAGCCTGAGCGAGGCGGAGAAGAAACACTTTA
TGGTGAACTTCAGCGAGGACAGGTTTTTTTTTGCGGAGTTCAAGATGCGG
TGGATCAAGTGGATGCAGCAGCATCAGGAGCTACCTTTGAGCATGGCGCG
GATTGGTTGCCCATCGTCTTACGCGCGGATGGGGATAATGGGGAAGGGGC
TGGTAGAGCAGGCGGTGGGGCCGGGGTATGCACGTGCATTTCTGCATATT
CGGTAGCCTGAACGATACGAGGGAGAGCCGCGCTCGGAGAGGGAGATAGA
GTACCGCGTGCAGCTCGGGAAAGATTTTGGGGGGGTCATCGACGCAAGGA
AGAAAGATGAGTTGACGTTTGGTCTTTTCTCGATTGTGGAGGAGGATGCA
GAAATGAGGTGTGAGGTAGAAGGATATGCGGAGTCTGGGTTTGGGGACAA
GGAGGTTGATGAGGAAGCAGAGAAGGGTACAACTGCGCTGGTGCGTCTTT
TCGAAAAATTCCCTCGCTTGTACAAGTTCGTGTGTGTGCGCTTCTACTTC
GTGCCTATTCACCAGCAGTTGATCGAGGCCATCTTTTCTAAGTACGACAC
GTGCGCAAAGAGAACGGACGTGGCTGTGATGGATTCCGTTCGGGTTGGGA
GTTGGCAAACCGAAGAGTCCAGAGATATCCCAAGCAGTGGTGCCACCGGC
AGTGAAATTCGTGCGGCCGGCACCAGGAGGCTGGCTGGGTGGAGAAAAGC
GAAGGCGGCGGCCCTCGCAGAACACCCAGCCGGAAACGCAAAGAGAAAGA
GAGTTTTGGATACGGAAACTGGGCGGGCGATGGTGGAAGAGATGAAGCGG
GAAGGGGGTTTGCCGACTCGGAGTGGTGTGCACGCTGACCAAACGTAGGT
GTGTTGTGTGTGACGTGGATTTTTGTCACCGGAAAAAAAAAAAACTCCGC
ACCAAAAATCATGTCGACTTTTTGTACCCTGCTGGGTGCGCCACCACCTT
CTGCATTCTGCGAAGGCTGCAGCCAGTTAGCTGCAGAGAGACACCGAGAG
AGCCGAGTATCGGTTGTGGTGTTCTGTCGCGTTGAAAACCATGCCATCAC
ACGTGTTTCATTATTGATGCCTGCTTATCATGCTGACACACACAAACTTC
GCGCGCAATTTGCGCCCCCAAGTTGAAGTTGAACTGCAGCACAAAACCGA
CGCAACTCACGCCGACCAAAAGCAATCCAGAACCCTGCCACGCCTGCAAG
AGCTATCACAGCACATCACAGCTCTCGATACAACCAGGCACGCAACCATC
TTCGCGAGAACCACGTGCATGCATAGCTGCAAGATGCATACCAAAACAAA
AAAAAGTCAGCTCTCCTCACAGCTTTCCTCCGAGCTCCCCCCCCCGTCCC
CTTCTTGTGCCTTCGTAGACAGCGTCCTTTCGCGACCACTCCTCCTCAGG
GTAGTGGCTGCTGCTGCAGTAGTAGGCGCCGTTGCTTTTCCTTTTCCCTT
GCCCTTTCCTTTCCCCCTCCGGTCGCCTGTCCGCCTT back to topprotein sequence of EsuBft359_11a-0001 >EsuBft359_11 ID=EsuBft359_11|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MNFLVHGFAAGNSSATSFCHRRKFVFEEFDLLVLYQTMPRSDKTCEVPHS
CHEPLPSGRVSAGLMHINFLVHGFAAGNSSATSFCHRSAETRWMVVMDGA
KILFERWDEIAWLFGDLAACNIGKTAYRNYWLKFAVALEDPLILVQVIFA
ARLGELVFDWAYNWIRGKGGFFLKGEGVGRRLFPGMRLVEVADFS back to topmRNA from alignment at Scaffold_233:259856..262380+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2525bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGACTGCTGCTGCAA
AAAGTGGAGACTATCCGCAAGGAGCCCAACACCTATGTTCGGGTGCTGCT
CGAGCGCGTGGACGAGGGCAGCCTGAGCGAGGTAAGCGGCCAAGGGCCTG
AAAAGGTAGTTGGTTTCAAGCACATTGGGGTTTAGGTTGAACGCTGCCGC
ATTTTTCACTGCTACTTTACTGCTGCTGCTGCTGCTGCTGCTGCTGTACG
AATCGGCTTTGACACATGCATGTGCAAAATGTTCCCCGCCGCTGCCTCCC
GCCGTTTTTTTTTTTGCGGTGATTACGTGATGATTCGACGACACACATGC
CTTTTCTATCCTGTTAAATGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTG
CTATGATAGAGCGATGCCAATGCTTATCTTTCACCGCTTGAACTGCGCGC
ACTCGCTGCTGTGATAAAGGCGGAGAAGAAACACTTTATGGTGAACTTCA
GCGAGGACAGGTTTTTTTTTGCGGAGTTCAAGATGCGGTGGATCAAGTGG
ATGCAGCAGCATCAGGAGCTACCTTTGAGCATGGCGCGGATTGGTTGCCC
ATCGTCTTACGCGCGGATGGGGATAATGGGGAAGGGGCTGGTAGAGCAGG
CGGTGGGGCCGGGGTATGCACGTGCATTTCTGCATATTCGGTAGCCTGAA
CGATACGAGGGAGAGCCGCGCTCGGAGAGGGAGATAGAGTACCGCGTGCA
GCTCGGGAAAGATTTTGGGGGGGTCATCGACGCAAGGAAGAAAGATGAGT
TGACGTTTGGTCTTTTCTCGATTGTGGAGGAGGATGCAGAAATGAGGTGT
GAGGTAGAAGGATATGCGGAGTCTGGGTTTGGGGACAAGGAGGTTGATGA
GGAAGCAGAGAAGGGTACAACTGCGCTGGTGCGTCTTTTCGAAAAATTCC
CTCGCTTGTACAAGTTCGTGTGTGTGCGCTTCTACTTCGTGCCTATTCAC
CAGCAGTTGATCGAGGCCATCTTTTCTAAGTACGACACGTGCGCAAAGAG
AACGGACGTGGCTGTGATGGATTCCGTTCGGGTTGGGAGTTGGCAAACCG
AAGAGTCCAGAGATATCCCAAGCAGTGGTGCCACCGGCAGTGAAATTCGT
GCGGCCGGCACCAGGAGGCTGGCTGGGTGGAGAAAAGCGAAGGCGGCGGC
CCTCGCAGAACACCCAGCCGGAAACGCAAAGAGAAAGAGAGTTTTGGATA
CGGAAACTGGGCGGGCGATGGTGGAAGAGATGAAGCGGGAAGGGGGTTTG
CCGACTCGGAGTGGTGTGCACGCTGACCAAACGTAGGTGTGTTGTGTGTG
ACGTGGATTTTTGTCACCGGAAAAAAAAAAAACTCCGCACCAAAAATCAT
GTCGACTTTTTGTACCCTGCTGGGTGCGCCACCACCTTCTGCATTCTGCG
AAGGCTGCAGCCAGTTAGCTGCAGAGAGACACCGAGAGAGCCGAGTATCG
GTTGTGGTGTTCTGTCGCGTTGAAAACCATGCCATCACACGTGTTTCATT
ATTGATGCCTGCTTATCATGCTGACACACACAAACTTCGCGCGCAATTTG
CGCCCCCAAGTTGAAGTTGAACTGCAGCACAAAACCGACGCAACTCACGC
CGACCAAAAGCAATCCAGAACCCTGCCACGCCTGCAAGAGCTATCACAGC
ACATCACAGCTCTCGATACAACCAGGCACGCAACCATCTTCGCGAGAACC
ACGTGCATGCATAGCTGCAAGATGCATACCAAAACAAAAAAAAGTCAGCT
CTCCTCACAGCTTTCCTCCGAGCTCCCCCCCCCGTCCCCTTCTTGTGCCT
TCGTAGACAGCGTCCTTTCGCGACCACTCCTCCTCAGGGTAGTGGCTGCT
GCTGCAGTAGTAGGCGCCGTTGCTTTTCCTTTTCCCTTGCCCTTTCCTTT
CCCCCTCCGGTCGCCTGTCCGCCTT back to topCoding sequence (CDS) from alignment at Scaffold_233:259856..262380+ >EsuBft359_11a-0001 ID=EsuBft359_11a-0001|Name=EsuBft359_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_233:259856..262380+ (Ectocarpus subulatus male Bft15b)
ATGAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAG
CTTCTGCCATCGCAGAAAATTCGTGTTCGAGGAATTTGATCTGCTCGTGT
TGTACCAGACCATGCCGAGGAGCGACAAAACATGCGAGGTCCCCCACTCG
TGCCACGAACCCTTACCGAGCGGCCGCGTTTCAGCAGGCCTTATGCATAT
TAACTTTTTGGTCCATGGCTTCGCGGCGGGAAACTCGTCTGCAACGAGCT
TCTGCCATCGCAGTGCTGAAACGCGGTGGATGGTCGTGATGGACGGTGCC
AAGATCCTCTTTGAGCGCTGGGATGAGATCGCGTGGCTTTTTGGCGATTT
GGCGGCGTGCAACATCGGCAAAACCGCGTACAGAAATTACTGGCTAAAAT
TCGCGGTCGCGCTTGAAGACCCGCTGATCCTTGTGCAAGTGATTTTTGCG
GCACGTCTTGGAGAGCTTGTGTTCGACTGGGCGTACAACTGGATTCGTGG
CAAGGGGGGGTTCTTTCTGAAGGGCGAGGGAGTCGGTCGGCGACTGTTTC
CTGGGATGCGGCTGGTCGAGGTTGCTGACTTCTCGTGA back to top
|