EsuBft3559_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3559_3a-0001
Unique NameEsuBft3559_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:32410..34957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3559_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Length120
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_3aEsuBft3559_3aEctocarpus subulatus male Bft15bgeneScaffold_211 32410..34957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_3a-0001EsuBft3559_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 32410..34957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_3a-0001-exonagat-exon-71200Ectocarpus subulatus male Bft15bexonScaffold_211 32410..32716 -
EsuBft3559_3a-0001-exonagat-exon-71196Ectocarpus subulatus male Bft15bexonScaffold_211 33145..33175 -
EsuBft3559_3a-0001-exonagat-exon-71197Ectocarpus subulatus male Bft15bexonScaffold_211 33311..33584 -
EsuBft3559_3a-0001-exonagat-exon-71201Ectocarpus subulatus male Bft15bexonScaffold_211 34067..34191 -
EsuBft3559_3a-0001-exonEsuBft3559_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 34288..34383 -
EsuBft3559_3a-0001-exonagat-exon-71199Ectocarpus subulatus male Bft15bexonScaffold_211 34464..34824 -
EsuBft3559_3a-0001-exonagat-exon-71198Ectocarpus subulatus male Bft15bexonScaffold_211 34949..34957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_3a-0001-cdsEsuBft3559_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 32410..32716 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3559_3a-0001 ID=EsuBft3559_3a-0001|Name=EsuBft3559_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1203bp|location=Sequence derived from alignment at Scaffold_211:32410..34957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGCAGCGCCGATGCAGCGCTCCGGCGACGCCTGCCACCCGCAG
GAACTCCCGCTCCGTCGCCCACCGCGCTTCTTTCTACTCAGCAACCGCGA
CTCCCCGCGCCTACTGCGGCTCCTCCCGGGCGTCCACGCCCGCGAGCGAG
CGGACCGCCAGCCTTGGGCATCCGGCGTCCTTCCTCGACAACGACGACAC
CGGAAAGAGCAACTGCAGCGACGATAGTTATTCCGGCAGAGCCGATTCTT
CCGGCGGCGGCGGCAGCGGCGGCGGGAGAAGCTTTTCCGTCAGGGGAAGG
ACGACGAACAAGTCGTGCAGCGGCTCTACCGAGAGCGGCTCCGATGGTGG
CGGGAGGATGAGCGGGAAAAGGGAACCGTCGACGACCGTGACTGCGGGAT
CGGCGGTCAGGCTATCTGCGGAGGCCTCCGCCATCCTGAACGCCTGGTCT
CCGCCCGCGGCAGGGGCGGTCCTCAAGCTTTGCGCAACGGCACCCGTGTC
TACTGTCAGTGGTGCAAGGTGGCAAGGCAAGCCAAAGGCTCTGGTCGGCC
CCTTGGCCTTGGATCGAGCTGTCAGCTCCCGTCCGATGGAGCCCGCGCTA
CCGGAGAAGCCGGCCGTCGTTATCAAGGCCGCGGGGGCGCGCATGCTCAA
GCGACTGGGTTCACAGATCGAGTTTTGGGGGGACAGCGGTGATGAGAGCG
ACTCCACACAGGTGTCATGTGGCATAAAATACGGGAGGACTGAAACTAGG
AGCTGTCGGCACTGCTGTGGGGTACTCTTGGGTGGTTTGACCGCGGTTGG
CTCTCCACACCTCTTTGTTTCCTCTGTTCCAATCGCTCCCGGCCGAGATC
GTAGTCCTCCGTCAGATTTATCAGTACGAGAAACGAGAAAAATCAAGGTT
TTCAATCGGAATACCACGGCCGTGCATGGTGCGGTTTCACCCGACCCCTC
GTCACCCCACCGACCTAACTCATGTTACTTCCCTCCTTCGACGCGACTCA
TTGTGTTTGGCTTGCGGTCGGCCACGCTCAGAGTTCCGCGCAGGGTGGCG
AGGACGAGGAACCCGCTCCAATCATTCCACGTGTGTCCCTTGCTGCTGCG
CGAGAAGCTGTGTGACGGCGGCGGGCGGCCTGTGCAAAAATTTGTGTTCG
CCTGCCCAGGAACGGCGGCAGCCCTGGTGAGTCACACAGATGGATGTAGA
TAA
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protein sequence of EsuBft3559_3a-0001

>EsuBft3559_3 ID=EsuBft3559_3|Name=EsuBft3559_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=400bp
MEAQRRCSAPATPATRRNSRSVAHRASFYSATATPRAYCGSSRASTPASE
RTASLGHPASFLDNDDTGKSNCSDDSYSGRADSSGGGGSGGGRSFSVRGR
TTNKSCSGSTESGSDGGGRMSGKREPSTTVTAGSAVRLSAEASAILNAWS
PPAAGAVLKLCATAPVSTVSGARWQGKPKALVGPLALDRAVSSRPMEPAL
PEKPAVVIKAAGARMLKRLGSQIEFWGDSGDESDSTQVSCGIKYGRTETR
SCRHCCGVLLGGLTAVGSPHLFVSSVPIAPGRDRSPPSDLSVRETRKIKV
FNRNTTAVHGAVSPDPSSPHRPNSCYFPPSTRLIVFGLRSATLRVPRRVA
RTRNPLQSFHVCPLLLREKLCDGGGRPVQKFVFACPGTAAALVSHTDGCR
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mRNA from alignment at Scaffold_211:32410..34957-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3559_3a-0001 ID=EsuBft3559_3a-0001|Name=EsuBft3559_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2548bp|location=Sequence derived from alignment at Scaffold_211:32410..34957- (Ectocarpus subulatus male Bft15b)
ATGGAAGCGGTACACTTTCGTCAAATAGCGTGGGAGATCGGTTTACCGCC
CGCCCTACTTCTTACACACCCACCCGACGAACATCGGAGTAACGACATCG
ATGTACTAGCTCCGGCGCCGCCAGCGACGGCAGCAGCGCCGATGCAGCGC
TCCGGCGACGCCTGCCACCCGCAGGAACTCCCGCTCCGTCGCCCACCGCG
CTTCTTTCTACTCAGCAACCGCGACTCCCCGCGCCTACTGCGGCTCCTCC
CGGGCGTCCACGCCCGCGAGCGAGCGGACCGCCAGCCTTGGGCATCCGGC
GTCCTTCCTCGACAACGACGACACCGGAAAGAGCAACTGCAGCGACGATA
GTTATTCCGGCAGAGCCGATTCTTCCGGCGGCGGCGGCAGCGGCGGCGGG
AGAAGCTTTTCCGTCAGGGGAAGGACGACGAACAAGTCGTGCAGCGGCTC
TACCGAGAGCGGCTCCGATGGTGGCGGGAGGATGAGCGGGAAAAGTAGTC
TCGGCCGTCGCGTGAGCGTCGGAATCCCGAAGAGCAGCAAGAGCAAGGCG
GCCGAGCTGCCGCCGGGGGATCAGGGGAACCGTCGACGACCGTGACTGCG
GGATCGGCGGTCAGGCTATCTGCGGAGGCCTCCGCCATCCTGAACGCCTG
GTCTCCGCCCGCGGCAGGGGGTGATTCGTCGGCGAGAACGGATCGGCGCA
CGGCAGCCCCGGGGGCGACTGCAACGGCGTAGGGAGCGCCGCTGACGTGA
CCGTCTCACGACGCAGCGGTCCTCAAGCTTTGCGCAACGGCACCCGTGTC
TACTGTCAGTGGTGCAAGGTGGCAAGGCAAGCCAAAGGCTCTGGTCGGCC
CCTTGGCCTTGGATCGAGCTGTCAGCTCCCGTCCGATGGAGGTGCGTTAC
GTAGCTGCGACAAGTTTGGGGACGCCGGGTGATGGTCCACGACGCGATTG
TGGTACCAAGTCCGGTTTTAGCGGCAATCCCTGTGCATCGGCGCGGTGGC
TCTAGCTGTAGAGAGTAAGCGAGGCCGGCTGGTGCGCTGCTTGCTCCTTT
TTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCACAGATG
GTGGCAAAAATGCCTACACCGGTGAAAGATACCCCCCTACTTTACAAGGA
GCCTGTTTATTCCGGCGTGAGAAGTTCCGGCGTGAGAAGTGATGTGGTAG
ACTTGGTGTACCTATCTTTTGCACTGCCGTCCCTTTTATCCAACACAAAA
GTTGTTTCTTGGCCATCCTTGTGGGAGGGTACACTGAAGCTCCCTTTTTT
TACGAATGGCGGTGCGGCTATAGCTTGCTGACGTCATGCTTTTCGTTTTT
GTCGTTGTGCTGTTCCGTGACAGCCCGCGCTACCGGAGAAGCCGGCCGTC
GTTATCAAGGCCGCGGGGGCGCGCATGCTCAAGCGACTGGGTTCACAGAT
CGAGTTTTGGGGGGACAGCGGTGATGAGAGCGACTCCACACAGGTGTCAT
GTGGCATAAAATACGGGAGGACTGAAACTAGGAGCTGTCGGCACTGCTGT
GGGGTACTCTTGGGTGGTTTGACCGCGGTTGGCTCTCCACACCTCTTTGT
TTCCTCTGTTCCAATCGCTCCCGGCCGAGATCGTAGTCCTCCGTCAGGTA
GGTCCAAATCGCACATGGAAGGGTTGGTATCTCTTATTTTCAGGGACCTG
GGCAAATATGAGAGTTCAAACCTTTTGAATCTTGGTGTGACATCAAACTG
CGGGAATTTGGGGGGGCCGACACAATCTACAGATTTATCAGTACGAGAAA
CGAGAAAAATCAAGTAGGTCGTGTGTACTGTGAGTCCATCCCGAATTCTT
CGTGGAGGTCCATCGACGTACGCAGGTTCTGGACAGCAAAGGGTTTCTGC
GAGACCCTGAGATAGAGCTATGTTTACACGAAGCCGCGTGCTAATTGACG
TAATTTGTGACAAGGGGTGTTGGATCAACATTTGTAATGATCTTTTATTG
TTCAGTCTGCCGAAGGTTGGCTGTAACGGCGAGCTACCGTTAGTTTGAGA
TGATGGATACGAACAACAGAAAATGTTTGGACCAAGGTATTGGGGCATCG
CGCGCTCGCTACCGCGAGATCTTGACGCTTATTAGACCGAACTAAACACA
CGCACACCGACCGCCCTCTCGTGTAACTCTCCCTGATTAATGCCCCTCCA
TCGGTACAACCTCTGTCCCCGACGTGTGGTGGTGGTGCGAGGGTTTTCAA
TCGGAATACCACGGCCGTGCATGGTGCGGTTTCACCCGACCCCTCGTCAC
CCCACCGACCTAACTCATGTTACTTCCCTCCTTCGACGCGACTCATTGTG
TTTGGCTTGCGGTCGGCCACGCTCAGAGTTCCGCGCAGGGTGGCGAGGAC
GAGGAACCCGCTCCAATCATTCCACGTGTGTCCCTTGCTGCTGCGCGAGA
AGCTGTGTGACGGCGGCGGGCGGCCTGTGCAAAAATTTGTGTTCGCCTGC
CCAGGAACGGCGGCAGCCCTGGTGAGTCACACAGATGGATGTAGATAA
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Coding sequence (CDS) from alignment at Scaffold_211:32410..34957-

>EsuBft3559_3a-0001 ID=EsuBft3559_3a-0001|Name=EsuBft3559_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1203bp|location=Sequence derived from alignment at Scaffold_211:32410..34957- (Ectocarpus subulatus male Bft15b)
ATGGAAGCGCAGCGCCGATGCAGCGCTCCGGCGACGCCTGCCACCCGCAG
GAACTCCCGCTCCGTCGCCCACCGCGCTTCTTTCTACTCAGCAACCGCGA
CTCCCCGCGCCTACTGCGGCTCCTCCCGGGCGTCCACGCCCGCGAGCGAG
CGGACCGCCAGCCTTGGGCATCCGGCGTCCTTCCTCGACAACGACGACAC
CGGAAAGAGCAACTGCAGCGACGATAGTTATTCCGGCAGAGCCGATTCTT
CCGGCGGCGGCGGCAGCGGCGGCGGGAGAAGCTTTTCCGTCAGGGGAAGG
ACGACGAACAAGTCGTGCAGCGGCTCTACCGAGAGCGGCTCCGATGGTGG
CGGGAGGATGAGCGGGAAAAGGGAACCGTCGACGACCGTGACTGCGGGAT
CGGCGGTCAGGCTATCTGCGGAGGCCTCCGCCATCCTGAACGCCTGGTCT
CCGCCCGCGGCAGGGGCGGTCCTCAAGCTTTGCGCAACGGCACCCGTGTC
TACTGTCAGTGGTGCAAGGTGGCAAGGCAAGCCAAAGGCTCTGGTCGGCC
CCTTGGCCTTGGATCGAGCTGTCAGCTCCCGTCCGATGGAGCCCGCGCTA
CCGGAGAAGCCGGCCGTCGTTATCAAGGCCGCGGGGGCGCGCATGCTCAA
GCGACTGGGTTCACAGATCGAGTTTTGGGGGGACAGCGGTGATGAGAGCG
ACTCCACACAGGTGTCATGTGGCATAAAATACGGGAGGACTGAAACTAGG
AGCTGTCGGCACTGCTGTGGGGTACTCTTGGGTGGTTTGACCGCGGTTGG
CTCTCCACACCTCTTTGTTTCCTCTGTTCCAATCGCTCCCGGCCGAGATC
GTAGTCCTCCGTCAGATTTATCAGTACGAGAAACGAGAAAAATCAAGGTT
TTCAATCGGAATACCACGGCCGTGCATGGTGCGGTTTCACCCGACCCCTC
GTCACCCCACCGACCTAACTCATGTTACTTCCCTCCTTCGACGCGACTCA
TTGTGTTTGGCTTGCGGTCGGCCACGCTCAGAGTTCCGCGCAGGGTGGCG
AGGACGAGGAACCCGCTCCAATCATTCCACGTGTGTCCCTTGCTGCTGCG
CGAGAAGCTGTGTGACGGCGGCGGGCGGCCTGTGCAAAAATTTGTGTTCG
CCTGCCCAGGAACGGCGGCAGCCCTGGTGAGTCACACAGATGGATGTAGA
TAA
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