EsuBft3555_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3555_3a-0001
Unique Name	EsuBft3555_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_211	contig	Scaffold_211:8673..11086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FZS4
ProteomeId	EsuBft3555_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	169
Hectar predicted targeting category	other localisation
Evalue	2.67e-16
EggNOG OGs	2D50F@1\|root,2SWWM@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_3a	EsuBft3555_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_211 8673..11086 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_3a-0001	EsuBft3555_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_211 8673..10767 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_3a-0001-exon	agat-exon-96276	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 8673..9798 +
EsuBft3555_3a-0001-exon	agat-exon-96275	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 10061..10179 +
EsuBft3555_3a-0001-exon	EsuBft3555_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 10507..10798 +
EsuBft3555_3a-0001-exon	agat-exon-96274	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 10930..11086 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_3a-0001-cds	EsuBft3555_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_211 8673..9798 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3555_3a-0001-exon	agat-three_prime_utr-13754	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 10768..10798 +
EsuBft3555_3a-0001-exon	agat-three_prime_utr-13755	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 10930..11086 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_211:8673..11086+
coding sequence from alignment at Scaffold_211:8673..11086+

spliced messenger RNA

>EsuBft3555_3a-0001 ID=EsuBft3555_3a-0001|Name=EsuBft3555_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1694bp|location=Sequence derived from alignment at Scaffold_211:8673..11086+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACCAACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGG
CGAGCCAGGTCGCGGGCAGGCGAAGCTGCCGTTCGGTTCTGCGGTTCGCT
CTGCAGCGAGCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTG
GCGCCCGAAGTCGCGCCGTCTGCGCGAAAAAACGCGGTGCAACCTCTCCA
TCGGTCGACGCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACG
CCGGGATGGCGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAG
CAGGAAGGGCAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGT
GGAGATGGATGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATG
ATGCCGAGAAGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGT
GGCGACAGCAGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGG
TGTTCCGCTGGAAGATTGGTTTGGTGAGGATGACCAGGATAGAGCTGCAG
AGCTTCTTTATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCA
AGCCGCGACCGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGA
CAAGGCTGATGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTG
TGGGAGACACCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCC
TCTAGCGGTACAAGTGGTGAGACCGTCCGAAAAAGTTCGAGGACGAACCT
TTTCGACGGGCTGTACGCCGATCCCGCCCGCGCTCGAGACGGGGCACGCC
GCCGATGCAGTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGA
GCCAAGGGGATGTTTGCGGGGTTGAACAAAAAAACGATTGAAGCACAGAA
GGCGCGAGGAGAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAA
GCGCGAGAGCGAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCA
GAGAAGGCGGGAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACC
AGAAAGTGGTGGACGCTATCGACAAGGCGAAGCAGTCCAACAGCTACAGC
GGTATTGTGGAGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTC
CATCATGCGTACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGAAGG
TGTCAACAAGATGCGGCACAGCCGCTACGTCGGAGATGTGGTGAAAACCA
CAGCGCAGACGGTGCGCAAGTGGGTAAAGGAGTTCTGCCAAGACGGAAAA
TTTCTCATCAGAAAACGACTTTACGAGATAAGCCAGGCGGACTCCTTCAT
CGACCATGAGGACATCGCCGAGCGTTGCCGGGAGGAAATCGACCGGCGGC
TTTACCGCCGGAAGAAAACGGATCCGCGGTTTCGTGTCTCGGACTTTCAG
AGGTAAGGGGACGGACGTGAAAATGAGAGAGCGCGCGGTGGGTGAACACT
GTTCTTCTGAAAGAAGTGTTTTCCGGCGGAGGAGGCATCTCTCGGACAAC
GGCGCACAGCTGGATCTGCAGACTCGGCTTCAGGTGGAAGAAGAGCGGGA
AGTGCGTCTACGTCGATGGCCACAACCGCCCGGATGTCGTCGAG

protein sequence of EsuBft3555_3a-0001

>EsuBft3555_3 ID=EsuBft3555_3|Name=EsuBft3555_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=501bp
MHTNDHDDDWRDEDAGGEPGRGQAKLPFGSAVRSAASAAVSAAARTAMAV
APEVAPSARKNAVQPLHRSTQHRHRRARWSKEDAGMAGSLAAWLKPPAQQ
QEGQHGSPQIMETEGAVEMDVEVGDVGADSSDHDAEKICSPQEEHDRTSR
GDSSESETDMLVCSGVGVPLEDWFGEDDQDRAAELLYSSGEDSFLDALDA
SRDRSRGPGELDGESGDKADDDVQPQDTGEAEAVGDTGETAAVGGAGHAA
SSGTSGETVRKSSRTNLFDGLYADPARARDGARRRCSGPGRGTRVASGDG
AKGMFAGLNKKTIEAQKARGEEEDTGTTSARARSARASARANARASTQSA
EKAGEHAAREGALGHLPESGGRYRQGEAVQQLQRYCGGPDGNADGISSPV
HHAYRLGDSGVRCPREGVNKMRHSRYVGDVVKTTAQTVRKWVKEFCQDGK
FLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQ
R

mRNA from alignment at Scaffold_211:8673..11086+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3555_3a-0001 ID=EsuBft3555_3a-0001|Name=EsuBft3555_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2414bp|location=Sequence derived from alignment at Scaffold_211:8673..11086+ (Ectocarpus subulatus male Bft15b)
ATGCACACCAACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGG
CGAGCCAGGTCGCGGGCAGGCGAAGCTGCCGTTCGGTTCTGCGGTTCGCT
CTGCAGCGAGCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTG
GCGCCCGAAGTCGCGCCGTCTGCGCGAAAAAACGCGGTGCAACCTCTCCA
TCGGTCGACGCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACG
CCGGGATGGCGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAG
CAGGAAGGGCAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGT
GGAGATGGATGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATG
ATGCCGAGAAGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGT
GGCGACAGCAGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGG
TGTTCCGCTGGAAGATTGGTTTGGTGAGGATGACCAGGATAGAGCTGCAG
AGCTTCTTTATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCA
AGCCGCGACCGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGA
CAAGGCTGATGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTG
TGGGAGACACCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCC
TCTAGCGGTACAAGTGGTGAGACCGTCCGAAAAAGTTCGAGGACGAACCT
TTTCGACGGGCTGTACGCCGATCCCGCCCGCGCTCGAGACGGGGCACGCC
GCCGATGCAGTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGA
GCCAAGGGGATGTTTGCGGGGTTGAACAAAAAAACGATTGAAGCACAGAA
GGCGCGAGGAGAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAA
GCGCGAGAGCGAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCA
GAGAAGGCGGGAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACC
AGAAAGTGGTGGACGCTATCGACAAGGTGAATAAGTATGCAATGTATTTC
AGAGTGTTGCGTGGTAGTGTTGTTGCCGTTGATTAGTTTGCTGCTAGCAT
ACTGCTTCCCTCGTGGCTGCTGTTTCCTGTATCCTGGATTTGTTGTGGAG
CTAGTGCCACTGCCGAAACCATTCCTGCTTGTCTGTCAATAATAATTTGC
AACTGTTGAATGCAACCATGTCCGTCAATCTGACGCCTTCCCGGTTTTGA
TTGCTTGAATTTCAATTTCTGTGCACACCTCCGTACAGGCGAAGCAGTCC
AACAGCTACAGCGGTATTGTGGAGGACCCGACGGAAATGCTGACGGAATC
TCGTCTCCCGTCCATCATGCGTACCGCCTTGGCGATTCGGGCGTACGCTG
TCCTCGAGTAAGTGGAAACGCCCAAGAAGCGCCGTGTGCTTGCTGCTCGC
ACTGCTGCATTTCTGCTCTTTGAGATCGCCCTTGCCCTCTGGTTCGTGGC
GTGCTCTGTACACACATACAATGTTCCCTGGCGAAGTGGTTGCCGAGTAG
CACGTTTGGTGATTATCTGTTTGTTGCATTTTTGGACTCTCTCCCTATGT
GTGACCGGGCGCACGGGGTACGTTGTGTATTTCTGCCACGCTCTCTTCAG
AGTCGTAACGCCGAAGGCTTGAAGAATATTCTTGTGTGAAGCACTCATCG
TTCCCATGTTGACGTCGTTGCCTTCAGGATTGAGGAAGGTGTCAACAAGA
TGCGGCACAGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAGACG
GTGCGCAAGTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCATCAG
AAAACGACTTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATGAGG
ACATCGCCGAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGCCGG
AAGAAAACGGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTAAGGGGA
CGGACGTGAAAATGAGAGAGCGCGCGGTTAGTGTTCCTGTTGGGTTGAAC
GGCGTTGGTTTTGTGTTCGTCTTGTGTACGCCCGTGTGTTGTGGATACAT
GTGGACTAATTTCTCCAACTCTCTTCTGTTACCGCTTTCCTCTCCACTGC
AAAATAGGTGGGTGAACACTGTTCTTCTGAAAGAAGTGTTTTCCGGCGGA
GGAGGCATCTCTCGGACAACGGCGCACAGCTGGATCTGCAGACTCGGCTT
CAGGTGGAAGAAGAGCGGGAAGTGCGTCTACGTCGATGGCCACAACCGCC
CGGATGTCGTCGAG

Coding sequence (CDS) from alignment at Scaffold_211:8673..11086+

>EsuBft3555_3a-0001 ID=EsuBft3555_3a-0001|Name=EsuBft3555_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1506bp|location=Sequence derived from alignment at Scaffold_211:8673..11086+ (Ectocarpus subulatus male Bft15b)
ATGCACACCAACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGG
CGAGCCAGGTCGCGGGCAGGCGAAGCTGCCGTTCGGTTCTGCGGTTCGCT
CTGCAGCGAGCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTG
GCGCCCGAAGTCGCGCCGTCTGCGCGAAAAAACGCGGTGCAACCTCTCCA
TCGGTCGACGCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACG
CCGGGATGGCGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAG
CAGGAAGGGCAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGT
GGAGATGGATGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATG
ATGCCGAGAAGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGT
GGCGACAGCAGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGG
TGTTCCGCTGGAAGATTGGTTTGGTGAGGATGACCAGGATAGAGCTGCAG
AGCTTCTTTATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCA
AGCCGCGACCGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGA
CAAGGCTGATGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTG
TGGGAGACACCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCC
TCTAGCGGTACAAGTGGTGAGACCGTCCGAAAAAGTTCGAGGACGAACCT
TTTCGACGGGCTGTACGCCGATCCCGCCCGCGCTCGAGACGGGGCACGCC
GCCGATGCAGTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGA
GCCAAGGGGATGTTTGCGGGGTTGAACAAAAAAACGATTGAAGCACAGAA
GGCGCGAGGAGAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAA
GCGCGAGAGCGAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCA
GAGAAGGCGGGAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACC
AGAAAGTGGTGGACGCTATCGACAAGGCGAAGCAGTCCAACAGCTACAGC
GGTATTGTGGAGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTC
CATCATGCGTACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGAAGG
TGTCAACAAGATGCGGCACAGCCGCTACGTCGGAGATGTGGTGAAAACCA
CAGCGCAGACGGTGCGCAAGTGGGTAAAGGAGTTCTGCCAAGACGGAAAA
TTTCTCATCAGAAAACGACTTTACGAGATAAGCCAGGCGGACTCCTTCAT
CGACCATGAGGACATCGCCGAGCGTTGCCGGGAGGAAATCGACCGGCGGC
TTTACCGCCGGAAGAAAACGGATCCGCGGTTTCGTGTCTCGGACTTTCAG
AGGTAA