EsuBft3555_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3555_2a-0001
Unique NameEsuBft3555_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:564..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRN6
ProteomeIdEsuBft3555_2
Protein domainsIPR025554
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length33
Hectar predicted targeting categoryother localisation
Evalue1.45e-39
EggNOG OGs28Q1A@1|root,2QWQ0@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0003674,GO:0005488,GO:0005515
DescriptionDomain of unknown function (DUF4139)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3555_2aEsuBft3555_2aEctocarpus subulatus male Bft15bgeneScaffold_211 564..1138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3555_2a-0001-exonEsuBft3555_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 564..695 -
EsuBft3555_2a-0001-exonagat-exon-96273Ectocarpus subulatus male Bft15bexonScaffold_211 941..1138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3555_2a-0001-cdsEsuBft3555_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 564..695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3555_2a-0001EsuBft3555_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 564..1138 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3555_2a-0001 ID=EsuBft3555_2a-0001|Name=EsuBft3555_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=330bp|location=Sequence derived from alignment at Scaffold_211:564..1138- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGTCGATGGTCTACCAACTCCGGCATGCGTTTACATGAGCACGA
CCCCCCCACACCCCATGTTCGGAAGGTGGAACTCGCAGAACTTCCCCGCG
GCTTCATCGACCAAACGAGCATCAGAGTCAAGGGCTCCGGGCATTGTACG
ATTCTCCACGTCAGCTACTCCGAGGAGCCCGAGCCGCCTGCATTGCCGAC
TCAGGAGGAAGAAGACGCGGCCAAAGCTAGGACAGAGGATTGCAAGCAAG
ATATCCAGAGGCTGACAGACGAGCTTACCGTCCTGAACCAGCAGTCGTCT
CGAAACTCACGCATGCGAGAGGTGCGTTGA
back to top

protein sequence of EsuBft3555_2a-0001

>EsuBft3555_2 ID=EsuBft3555_2|Name=EsuBft3555_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MRGRWSTNSGMRLHEHDPPTPHVRKVELAELPRGFIDQTSIRVKGSGHCT
ILHVSYSEEPEPPALPTQEEEDAAKARTEDCKQDIQRLTDELTVLNQQSS
RNSRMREVR
back to top

mRNA from alignment at Scaffold_211:564..1138-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3555_2a-0001 ID=EsuBft3555_2a-0001|Name=EsuBft3555_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=575bp|location=Sequence derived from alignment at Scaffold_211:564..1138- (Ectocarpus subulatus male Bft15b)
ATGCGAGGTCGATGGTCTACCAACTCCGGCATGCGTTTACATGAGCACGA
CCCCCCCACACCCCATGTTCGGAAGGTGGAACTCGCAGAACTTCCCCGCG
GCTTCATCGACCAAACGAGCATCAGAGTCAAGGGCTCCGGGCATTGTACG
ATTCTCCACGTCAGCTACTCCGAGGAGCCCGAGCCGCCTGCATTGCCGGT
GAGGTTCCACACGTATTCGAACAGTACGTGGTCTTGTTGTGAGGTCTGGT
CGACTGACTCCCCCATCACCCACGGCACATGTTCTAGATAATCCCAACTC
TGCGCACGCATATGCCACACATGGAACTCGACGATGCTTTTCGCCGCCTC
TCCACAGGTTTGCAGGCAGATATTTATTTCTACAAACACTCTTTATCCAC
TGTCTTCCGTTCAAACTGTTGCAAAACCTGTCGATGTTGGCAGACTCAGG
AGGAAGAAGACGCGGCCAAAGCTAGGACAGAGGATTGCAAGCAAGATATC
CAGAGGCTGACAGACGAGCTTACCGTCCTGAACCAGCAGTCGTCTCGAAA
CTCACGCATGCGAGAGGTGCGTTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_211:564..1138-

>EsuBft3555_2a-0001 ID=EsuBft3555_2a-0001|Name=EsuBft3555_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_211:564..1138- (Ectocarpus subulatus male Bft15b)
ATGCGAGGTCGATGGTCTACCAACTCCGGCATGCGTTTACATGAGCACGA
CCCCCCCACACCCCATGTTCGGAAGGTGGAACTCGCAGAACTTCCCCGCG
GCTTCATCGACCAAACGAGCATCAGAGTCAAGGGCTCCGGGCATTGTACG
ATTCTCCACGTCAGCTACTCCGAGGAGCCCGAGCCGCCTGCATTGCCGAC
TCAGGAGGAAGAAGACGCGGCCAAAGCTAGGACAGAGGATTGCAAGCAAG
ATATCCAGAGGCTGACAGACGAGCTTACCGTCCTGAACCAGCAGTCGTCT
CGAAACTCACGCATGCGAGAGGTGCGTTGA
back to top