EsuBft3551_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3551_2a-0001
Unique Name	EsuBft3551_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:9501..12205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3551_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	181
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a	EsuBft3551_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 9501..12205 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a-0001	EsuBft3551_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 10056..11639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a-0001-exon	EsuBft3551_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 9501..10457 +
EsuBft3551_2a-0001-exon	agat-exon-56155	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 11298..12064 +
EsuBft3551_2a-0001-exon	agat-exon-56154	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 12114..12205 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a-0001-exon	agat-five_prime_utr-8722	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 9501..10055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a-0001-cds	EsuBft3551_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 10056..10457 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_2a-0001-exon	agat-three_prime_utr-13750	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 11640..12064 +
EsuBft3551_2a-0001-exon	agat-three_prime_utr-13751	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 12114..12205 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:9501..12205+
coding sequence from alignment at Scaffold_94:9501..12205+

spliced messenger RNA

>EsuBft3551_2a-0001 ID=EsuBft3551_2a-0001|Name=EsuBft3551_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1816bp|location=Sequence derived from alignment at Scaffold_94:9501..12205+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGAGTCACTGGTCTGTCTGCCATATAGGTTCCACTTGAGGCCCTCTGT
CCTCTGTCTAACTGTTCCTCCGCTGGTTCTGCGGATCTTTCCGTGCGGCC
CGCATGCGCATGTATGTCACTGTATGCGCATGACCGGCTACCGCACATAC
TACAACCGCCCGGACATCACTGCCCGGCATATTGTCTTGTCCTCTCACGC
CCGGGGAGATAACGCCCCGGCCGTGCCGATGCTGTGCGCGTCACCGCGCC
AGCGCAGACTGCGCCACGTCAGGCTGGTTCTGCGTCGACAGAGCTGATGT
GTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCACTTCTCTTTCCCTT
TCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAGAGAAACTACTCT
GTCCCGCTGTCTGTCACCAGCGGTCCCCACCGATCGCTCCGGAAGTCTCC
TCTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCGGTCCGAGGT
AGCCCACACTCTTATTGGCGTCAGCTCCAGGTTAGCCTGCTGTCCTCCTC
AGACCATGACTTCCGCCGACGACCTCGCCAACCAGCTGTCATTGTCCAAT
TTAGCCAACAACGGCGAATTGCCTACGGATCAACCCGGCGAACTCTCCGT
CCCACCTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCGGAGGCCACG
TCGAGGCCAAGGGCTTCGACCCACCGTCACCACCCCCACCCAACGTCCAG
GACCTCGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTCCACCGCTGC
GCCCTCCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGGACCTCACCT
CCACGCTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTCGACCTGGTC
ACCGATGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCAGCTGATGGA
CAGGATGTTCGAACACCACCGCCAGAACCGAGGACGCACTCCGGCGTTCC
AGTCGGGATCCTCGTCCGGGGGTGGCTCGTCCTCGTCCGGGGGCAAGGCG
CCTCGCCACGGCAACCACCGCGGCGGTGGTGGCAACTCCCGTCGTCCCGT
CCGCAAGGAGCGCCCCAGGTGCACCCACCCCACGTGCGACAAGCCCCTGG
GGCACACGACCGCAACATGCTTCCAGAAGAAGCGTGAAGAAGCGGCAACC
GAGCGCAACCGGCGGCGCAACCAGCCGACGGCCAAGCGTCCGTGCGCGGA
AGACCGCACGCCTCGCAGCAAAGATGCGAGCACCGATGATGACGAGTAGG
GGTGCCCAGCTAGCGTAGCGCCTGCGGTAGTAGGGTCGTCTCCTGCAGTT
GGCAGGAAAGGCGCGAAGAGAAAACTCTCCGCGTCAGTAGCTGTCGGTAC
ACCTGCTTTTGTTGTGCCCCGTGTCCCTGTCCGTAACGGTAGTTACGTAG
TGCCTAGAGTACGTCGTCGTCCTCATGGTACTGAGAGAAAGCTTTTAGGT
CTCACTGCTTTGTCTGAATTTCGTGTCCCCTCCCCGGTGCTTGATGCCGA
AGAGGTAGAGCCTCTGCCATCGTCGCGTAAACGTCCTGCGTGTGATAGTA
GAAGCGCTGTGTCTTCAACTCCCTTGAGTGTGCCCATCTGTAGCCGCGAC
GGCGATGTCGCCCCGCAGAAACGAGTCACTTTTGCTGAAGTTGAATCTGA
GTCCGCCTCCATGCCCGATGATGCTGTGAAGGAAGGGAACATGTTCCCTG
TGGATGAAAAAAATAATTCAGACGATGTGTGGTACAACTCAAGGATGGCG
CACAAACCCAATCTTT

protein sequence of EsuBft3551_2a-0001

>EsuBft3551_2 ID=EsuBft3551_2|Name=EsuBft3551_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MTSADDLANQLSLSNLANNGELPTDQPGELSVPPVAEARDTPPTSGGHVE
AKGFDPPSPPPPNVQDLVITTSPPPSVASTAAPSVGAPSASSSSTDLTST
LSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRTPAFQS
GSSSGGGSSSSGGKAPRHGNHRGGGGNSRRPVRKERPRCTHPTCDKPLGH
TTATCFQKKREEAATERNRRRNQPTAKRPCAEDRTPRSKDASTDDDE

mRNA from alignment at Scaffold_94:9501..12205+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3551_2a-0001 ID=EsuBft3551_2a-0001|Name=EsuBft3551_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2705bp|location=Sequence derived from alignment at Scaffold_94:9501..12205+ (Ectocarpus subulatus male Bft15b)
TGTGAGTCACTGGTCTGTCTGCCATATAGGTTCCACTTGAGGCCCTCTGT
CCTCTGTCTAACTGTTCCTCCGCTGGTTCTGCGGATCTTTCCGTGCGGCC
CGCATGCGCATGTATGTCACTGTATGCGCATGACCGGCTACCGCACATAC
TACAACCGCCCGGACATCACTGCCCGGCATATTGTCTTGTCCTCTCACGC
CCGGGGAGATAACGCCCCGGCCGTGCCGATGCTGTGCGCGTCACCGCGCC
AGCGCAGACTGCGCCACGTCAGGCTGGTTCTGCGTCGACAGAGCTGATGT
GTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCACTTCTCTTTCCCTT
TCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAGAGAAACTACTCT
GTCCCGCTGTCTGTCACCAGCGGTCCCCACCGATCGCTCCGGAAGTCTCC
TCTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCGGTCCGAGGT
AGCCCACACTCTTATTGGCGTCAGCTCCAGGTTAGCCTGCTGTCCTCCTC
AGACCATGACTTCCGCCGACGACCTCGCCAACCAGCTGTCATTGTCCAAT
TTAGCCAACAACGGCGAATTGCCTACGGATCAACCCGGCGAACTCTCCGT
CCCACCTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCGGAGGCCACG
TCGAGGCCAAGGGCTTCGACCCACCGTCACCACCCCCACCCAACGTCCAG
GACCTCGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTCCACCGCTGC
GCCCTCCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGGACCTCACCT
CCACGCTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTCGACCTGGTC
ACCGATGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCAGCTGATGGA
CAGGATGGTGAGTCTGCGTGCAGTCGCCGTTAGGGCGGAATCCAGTTCCC
CGCCTGTGTCTGTCGGTGCTTCGTCGCACACCCCCTCTGTCCCGGACTTG
ACCCGTTCGTTCGCTGCCGCGTTGTCGCGGCAGAAGCATGTCGTGTTGAC
CCCTGTTGATGTCAAGCAAGTCCCCCGTCTAACTGGTAAAAGCGACGTAG
ATGTCAACTCTGTCATGTCCCAGTACCGCCTTATCGCAGGATTCAAAGTC
AAGGGTTCGTACCCTACCAACACCCCTGTCACGGAAATCGACAACCGCGC
TGATGCCGTTGCATTCGAATCCATCTCTCTCATCTGCGACGGTCCCGTCT
TGCAGATCTACCAACAAATGATGTCCGGGAAAATCGATTGTTCCGCAACC
TCTGGCTCGTACCACGCTGTAGAACAAGCGAACTCTTACCCACCGCCCAC
CACATGGGTAGAGCTCAAAACTGCTCTTCTAGATGTCCTCATGCCCTCCA
ACTGTGTTGAAGAGAGCGCACTCCGTCTAGTCAACCTCCGTCAAGAGGCC
AACGAGAATGTCAGCTCGTATGCCCTTCGTCTGCAAACCAACTGTACTAG
GTTTGAACATGCTGTCACTAGGGCTACCCCAGGCCGCTCGCCGTACCAAG
CACTTGTGGTAGTCCTCTTTCAAAATGGCCTTGTCCCGACTATTCGGTCC
AAAGTTCTTGATAAGAAACCTGTCAAAGCCCTTCGGGAGGCTATCGATCG
CGCTCGCCGTACCGAGTCCGCGAACTTGTCTGGTGAAACCCCTGCTGTCA
GCGCTGTCTCGCTCACTCCTACCTCGTCCCGTCCCGTGTCACAAAAGTTC
GAACACCACCGCCAGAACCGAGGACGCACTCCGGCGTTCCAGTCGGGATC
CTCGTCCGGGGGTGGCTCGTCCTCGTCCGGGGGCAAGGCGCCTCGCCACG
GCAACCACCGCGGCGGTGGTGGCAACTCCCGTCGTCCCGTCCGCAAGGAG
CGCCCCAGGTGCACCCACCCCACGTGCGACAAGCCCCTGGGGCACACGAC
CGCAACATGCTTCCAGAAGAAGCGTGAAGAAGCGGCAACCGAGCGCAACC
GGCGGCGCAACCAGCCGACGGCCAAGCGTCCGTGCGCGGAAGACCGCACG
CCTCGCAGCAAAGATGCGAGCACCGATGATGACGAGTAGGGGTGCCCAGC
TAGCGTAGCGCCTGCGGTAGTAGGGTCGTCTCCTGCAGTTGGCAGGAAAG
GCGCGAAGAGAAAACTCTCCGCGTCAGTAGCTGTCGGTACACCTGCTTTT
GTTGTGCCCCGTGTCCCTGTCCGTAACGGTAGTTACGTAGTGCCTAGAGT
ACGTCGTCGTCCTCATGGTACTGAGAGAAAGCTTTTAGGTCTCACTGCTT
TGTCTGAATTTCGTGTCCCCTCCCCGGTGCTTGATGCCGAAGAGGTAGAG
CCTCTGCCATCGTCGCGTAAACGTCCTGCGTGTGATAGTAGAAGCGCTGT
GTCTTCAACTCCCTTGAGTGTGCCCATCTGTAGCCGCGACGGCGATGTCG
CCCCGCAGAAACGAGTCACTTTTGCTGAAGTTGAATCTGAGTCCGCCTCC
ATGCCCGATGATGCGTGTTGCCGTAGACAGTCGCGGCCTCGCCGCTCGTG
TTTGCGTTCGAAGTGTGAAGGAAGGGAACATGTTCCCTGTGGATGAAAAA
AATAATTCAGACGATGTGTGGTACAACTCAAGGATGGCGCACAAACCCAA
TCTTT

Coding sequence (CDS) from alignment at Scaffold_94:9501..12205+

>EsuBft3551_2a-0001 ID=EsuBft3551_2a-0001|Name=EsuBft3551_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_94:9501..12205+ (Ectocarpus subulatus male Bft15b)
ATGACTTCCGCCGACGACCTCGCCAACCAGCTGTCATTGTCCAATTTAGC
CAACAACGGCGAATTGCCTACGGATCAACCCGGCGAACTCTCCGTCCCAC
CTGTCGCCGAAGCCCGAGATACTCCGCCCACCAGCGGAGGCCACGTCGAG
GCCAAGGGCTTCGACCCACCGTCACCACCCCCACCCAACGTCCAGGACCT
CGTCATCACCACGTCTCCTCCTCCGTCCGTAGCGTCCACCGCTGCGCCCT
CCGTCGGCGCTCCGTCCGCCTCCTCTTCGTCCACGGACCTCACCTCCACG
CTCTCCAAGATCCAGTCGGTCGTGGACAGGCACCTCGACCTGGTCACCGA
TGGTCGCCTGGAGCAGCTGCCCGACCACGTAGTGCAGCTGATGGACAGGA
TGTTCGAACACCACCGCCAGAACCGAGGACGCACTCCGGCGTTCCAGTCG
GGATCCTCGTCCGGGGGTGGCTCGTCCTCGTCCGGGGGCAAGGCGCCTCG
CCACGGCAACCACCGCGGCGGTGGTGGCAACTCCCGTCGTCCCGTCCGCA
AGGAGCGCCCCAGGTGCACCCACCCCACGTGCGACAAGCCCCTGGGGCAC
ACGACCGCAACATGCTTCCAGAAGAAGCGTGAAGAAGCGGCAACCGAGCG
CAACCGGCGGCGCAACCAGCCGACGGCCAAGCGTCCGTGCGCGGAAGACC
GCACGCCTCGCAGCAAAGATGCGAGCACCGATGATGACGAGTAG