EsuBft353_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft353_5a-0001
Unique Name	EsuBft353_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:1107222..1113467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Symbol	LHCP
Status	Manually annotated
Seed ortholog	2880.D7FIR0
ProteomeId	EsuBft353_5
Protein domains	IPR022796
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	TMhelix
Protein domains	IPR001344
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	IPR023329
Owner	apollo_admin@sb-roscoff.fr
Note	fucoxanthin-chlorophyll a-c binding protein chloroplastic os:macrocystis pyrifera gn:fcpb pe:2 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	788
Hectar predicted targeting category	chloroplast
Evalue	2.11e-147
EggNOG OGs	2CDPH@1\|root,2S3EU@2759\|Eukaryota
Ec32 ortholog description	Light harvesting complex protein
Ec32 ortholog	Ec-20_003280.1
Date last modified	2016-08-11
Date creation	2016-06-14
Description	Light harvesting complex protein, LHCR/LHCF family
Description	Chlorophyll A-B binding protein
COG category	U
Note	Dittami S., annotator

Cross References

External references for this mRNA


Database	Accession
GO	0009535
GO	0009523
GO	0009765
GO	0016020
GO	0018298
GO	0016021
GO	0016168

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a	EsuBft353_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 1107222..1113467 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a-0001	EsuBft353_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 1107288..1113414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a-0001-exon	agat-exon-103407	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1107222..1107361 +
EsuBft353_5a-0001-exon	agat-exon-103406	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1111514..1111652 +
EsuBft353_5a-0001-exon	EsuBft353_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1112495..1112719 +
EsuBft353_5a-0001-exon	agat-exon-103405	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 1113184..1113467 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a-0001-exon	agat-five_prime_utr-8701	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 1107222..1107287 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a-0001-cds	EsuBft353_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 1107288..1107361 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft353_5a-0001-exon	agat-three_prime_utr-13728	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 1113415..1113467 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:1107222..1113467+
coding sequence from alignment at Scaffold_630:1107222..1113467+

spliced messenger RNA

>EsuBft353_5a-0001 ID=EsuBft353_5a-0001|Name=EsuBft353_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=788bp|location=Sequence derived from alignment at Scaffold_630:1107222..1113467+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTTGTGCCTCGCGGTCATCCCAGCATCAACCAAAGCTCATCACCAACC
CAAAACAGAGAGAGATATGAAGACTGCTTGTGCTATGGCGGCTGGTGTTG
CGGCGTGCGCTGCGACGGCATCAGCGTTTGTTGCTCCTAGCGCGTTCAAG
GGAGCGTCGTTGACCGCCGCGAAGCCCGCGTCCTCGTCGATGAAGATGTC
CTTCGAGAACGAAATCGGAGCCCAGGCGCCCATCGGCTACTGGGATCCCC
TTGGCCTTCTCACCAAGGACCCCTCCCAGGAGCGCTTCGACCGCCTCCGG
TACGTGGAGATCAAGCACGGCCGCATCGCAATGCTCGCCATCCTCGGCCA
CATCACCGCCCAGAACTTCCGGTTCCCCGGCATGCTCGCCCCGTCCGCGA
ACCTCGCGTTCGCCGACTGCCCCAACGGTCTCGCCGCCATCTCCAAGATC
CCCCTCTACGGCCTGGCCCAGATCTTCCTTTTCATCGGGTTCCTTGAGAC
CAAGGTTATGTTGCAGAAGGAGGGGTCTTTCCCCGGAGACATGTCGCTCA
TCAACCCCTTCGAGAAGGAGTGGGAGTCATGGACGGAGGAGGAGCAGGCC
AATAAGAGGGCGATCGAACTCAACAATGGCCGCGCGGCGCAGATGGGCAT
CCTCGCCCTGATGGTGCACGAGCAGATCGACAACACCCCCTACGTGATCA
ACGAAATCCTCGGCTCGCACGTCCAGTTCAACTAGAGCGGAGGGAGGACC
AACCGGTCACCCCGTTTACTTTTCGTGCTGGGGGCGTT

protein sequence of EsuBft353_5a-0001

>EsuBft353_5 ID=EsuBft353_5|Name=EsuBft353_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFENEI
GAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQN
FRFPGMLAPSANLAFADCPNGLAAISKIPLYGLAQIFLFIGFLETKVMLQ
KEGSFPGDMSLINPFEKEWESWTEEEQANKRAIELNNGRAAQMGILALMV
HEQIDNTPYVINEILGSHVQFN

mRNA from alignment at Scaffold_630:1107222..1113467+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft353_5a-0001 ID=EsuBft353_5a-0001|Name=EsuBft353_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6246bp|location=Sequence derived from alignment at Scaffold_630:1107222..1113467+ (Ectocarpus subulatus male Bft15b)
GTTTTGTGCCTCGCGGTCATCCCAGCATCAACCAAAGCTCATCACCAACC
CAAAACAGAGAGAGATATGAAGACTGCTTGTGCTATGGCGGCTGGTGTTG
CGGCGTGCGCTGCGACGGCATCAGCGTTTGTTGCTCCTAGGTGAGTTTTT
TTGTTTCTTCGTTCATGAACCAGAGATGTGTGTCTCGACTGTTGTCGGCC
TCTCTTTCCTCTCTGTCCCTGTTTGGTACACCGTGGGGAGAAGTACGCCC
ACAGCCGTGTACCGTCGTTCACGGTGTCATTTCCTGTCGCATTTGTAGAA
GGAGTGTTCGCGAGCACACGAGCGGAGATGAGGACGCAGTCCTGCACCAC
GGGAGCTTTGGCATTCGAACCGAGGTGTTGGTCGCCTGTCTGTGACATGT
ACTACAAGCAGTAGGAGAGCTGACTCCGAGATTCCAGTTGGTACACCTCT
CTCGCTCAGGAGCACCAAGCGCTGGCGAATGATGCTGGGTAGGGTGATCC
GAGACAGCCACCAATGGTGCAGGAAGTTTGAACAGCGGTCATCCTGTTTC
CGTGGGTGGTTGTTGCCCGTCTCTTCAAATACCTCAATCCTGCAGCTGGT
GATGACTCACACCAACGTACCATAAATTTGCTGTGCCCGCGTTTTTTTTA
GGGCGGAAAACGAGAGCTAAAGCGCACACAGACACGCACATACCACATCG
TTTGGCTGGTCTGTAGCAGTTCGAAGATGTTGCCAAGGCACGCTGGTGGC
ACTTGTGGTGATTCCTATCACTGTCTGCCATCACGTCATAACTGGAAAAT
TCGCTCCTCATAAAATATCTGATGAAAAGGAAGGAGACGAGGGTGACTCT
CTCCATCATGCATGACATGCGGGGAAAAACTGCTGTGCGCACATGTTTCC
TCGCCACATGTTTGGATCGAACGAGGCTCGTAGGGCAGCAGAGCCTGTGT
GCAGCACGTACGCGTATTGTTATGTACCCGGGCTACATTTTCGTCGTACT
GAAGAGGGTTCAACAGTGGTTTGGTGACGAAGCGCGCTCAGCGAGGCGTG
CTGCCTGCCCCTAGCCCGTCAAGAGTTGCCTGTCTGCGCACTACCGCAGA
CGCATGCCAAGAGCCAAGAGGCACAACAACACCTCAGTGGTGATTCATGA
ACCAAGCAATCCTTTGTTGGACTTGTTGCAGAGTTACTTTCTATCTCGAC
AGTGGGCCTGGTCAACAAGCTCCCGTCTTGTGTTGGTCGCGGTCTCCCGT
GATCGAGCTAACAGCCGGGCGGTTCATCTTCGAGAAGCGGCACAATTGAG
AGTCCCCCAGTATTGCAGCAGTACAGCAGTACTCTGCCTTGCTGGTGGGA
CGGGTGGTGCAGCCTTGACGGTCACGTGCGTTGTGTGCACATAGAGAGAC
ACAAACAGATCCACACCCTTACAGCATGCTGCCCGCGCTCTTTGGTGTAC
ATCGATGCCCAAGATCGTTGTCACGAGCATCCCGCCTTTCTTGAAGAAGA
GCGGCAAATCACACGTTTGACCTTTGAGCACCTGGTAGCTCGTGGAACTA
TCTCCACTTGACACATTGCTGTACCCTGGCACAACAGCCGTCCTGCGCGA
CCTCCAGAAAACGCCCAACTAAGCCCCCTCCCCGTGCAAGTTTGCACACA
TTCCACTGCGGTGAACTATGGGGTATGTAGCATGTCTGCTGAGGTGAAGG
CGGTTTCGAGCACGTGCCTACTGCTGTCGAACGATCAAGGCGAAAAATGT
ACTCGAGAGACGGTTTTCACCTGAACGGCGGCAGCGAGACCACGCAGCAA
CAGTAAATACTTGTACGTTCGTAAGCTTGCTACACGTTCTTAGGAAGTGT
CTCATTCCGTAGAGCTCTGGTCATACTTGCACTATTCCTGTGCTTGTGGC
AGCTGTGTCAACTCTCGTAACACAGCAGCTGTGTATAGATGGTGCCTGTG
AAGCAAGACCTGCTGCTGGCTTCGCAGTTTCGGTGAAAACCTCGGTGGTC
TAAAACTTCAATTTATGGAATAGGACACCCAGAGACCTGCACCCGAAGGC
GTTCCAGGCGGCTTGCACCATCCCAGGGGTGAAACCTCGTAGTATAATAG
TGGTGGTGACGAGTTTGTTGTTGTTGTTGTTTCTCACATTAGCTCTATAG
TCCACAAAAAATGGGGAGCCCGTGGTCTCAAAACCCGGCACATACGACGC
CGCGAGAAAACAAAAAACAAAATAGGATACAAACCACTCGGAAAAAGAAA
ACAAAATGATCGAAAGAAAGAAAAGAACAGGTATCGCACCTACTGTTCGA
GAAAAGAGCCCTCGGACACCGATCAAAATAAAACAAAACAAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAAAGAAACACAGCACAGAGGCCGAAGGCAATACAAGGAC
ATACATAAAGGAGTATAGCATACGGCAGGGAGGGAAACCGGGCGCAACAA
CATCAGCCGGGTGCATAGTTCGCCACAAGCGTTGCCTCGGCCGCCCTACT
CGCTTCTACAGCAGTGCCCGTTCGCCGTTTCTTCCCCCCCACCGCCGCTT
CGCCGGTTCTCTTTCTCTTCGGTCCTGAGATGGTCGTACTCTCTGCTTCT
GCTTCCCGCGCGCGCTGGCGCTTCGCGGACGCTTCCGCCTCCTGCCTGTG
CCATTTCCTCATGAACCATGCCGCCCCGTCCTCGACCTTGTTGTACCACA
CCTCCGAGTTCTTGGCGCTCTCTTTCCATTTCCCCCCTTCCTTTTCGTCT
CCCATGTGGAAGGCCACGAGGTCCTCTCCTAGACGAGACACCCAGTCGCT
CTCCTGCCCGCCCCGGTATCCCACGCCCCCCGCCATTTCCGCGATGTTTC
CATTTTCTAGCGTTCTGGTTGGTGTATTCCGTGAAGACCATCCAATAGCG
GAAAGTTAAACGTCCAAGATCTTTAAGCTATTTCCTCTTTGGCCATGTGC
GTCGGCAGTTGAGAGACCCGATCTCGGCGGCCTGGCTCTACGCCACCATG
TGGTGGTTGTTTCGGACCGTGGGCTAGGACTACATATCGGGGAAAAATAC
CTCCCCGGGTTGTGCGCCGAGCGACCTTGTCGCCCCCCCCTCAGCATTTG
GCCTGGTGCCCGTTGCCGCGGCGGTTAATATTTGCGATGGATGGATCGAT
CTCGTTGTGGTTGTCTCATGCTGGCCGTGGTCGACTGCCTCACGGCACCA
GTCGGGAGTTGATCCGTGCCCTTGATGCATGAGACGGCGCCCGATCCCGA
CGACAGGTGTAAACAATATCTACCAAAGCTATGTCAAGAGATTCGTGTAG
CCACCGCCGAGGTGTGAATATCGGCACGGCACGCAGTTCTCTCTCCACGT
GTACTCGCGTGTGCTCGAAGTTCGACACGTCCTGGTCGAGTCCATGCCCA
TTCATATCGCATGCCATTCGGTGTTGCCGCGCGGTATTAACCAGAGCCGA
AATATTGAAATGTTGTCCGCCAGTTGTAGATGGGACCCAATCGAGACCGT
ACGACCGAGAAAACATTCAGCCTTGGTTGACTGATGACCTAGCAACACGT
CGTGGTTCAAACCCCACCCGTGTTGGTGTTTGCGCGGGAAATAACGACAG
CCGAAATCTGTAGAACCTGCAAAACGGGCACCAGTTTTCGGCTGTGGTCA
TGGACCGGGAAGCACCAAACGCGGGCCGCGTGGCCGCGCGTGTGTATGAC
ATGGATGAAAATGGATCCAATACCGATGTGTCGAATCAAGAAAACGCGTG
AAGGTGTTTGTCATGTTTTTGCCGTGAACATGTATGCTGCTTAATTCTCT
CTTTGCCAATGCACTACTCGGCTTCTCCAGGTGCTGCCCCCTTTCGTCCT
TTGTTCATGTTTTGTTCCTCATTGGAACAGATTTTGCCTTATTTTTATAC
GCTGGTTCTGTTTTGTCAAGGGACTATTGTTGCCCGCTGCTGTCCCTTTC
TCGTGTGCCAATTTTTCAATTTTAATTGCGATGGCGTGGACAAGAGCATC
AACAATCCGACACTGACTATCGGCTCTCATGCTCGTCGTTGTCGCTTGCT
TTCCCCCCTCCGGCCGACGTTTCATGACTTTCGATATTTCAGCGCGTTCA
AGGGAGCGTCGTTGACCGCCGCGAAGCCCGCGTCCTCGTCGATGAAGATG
TCCTTCGAGAACGAAATCGGAGCCCAGGCGCCCATCGGCTACTGGGATCC
CCTTGGCCTTCTCACCAAGGACCCCTCCCAGGTTAGTTGGTGCCGCCTCG
GCCAACTCTATTTTGGCGGGCGTACACGTCGTATGTTGGTTTGTCAATTA
GGTTGTGGACGTGACAAGGTACATCCATGTGGTATGATTGGATAGCACCG
AAGTTTGTTGAGGTTCTCGTTTGTTGTCAGACGACCGTTGGAAAGCGCAA
GTCGTTCAATGTACGTCATGGCGTCGGATGAGGATGGCAGTCCCTGAAGG
GGGCAATGGGCTTGCGAACAGAGTTCCTCCGGGGTTGCGTGTGCCGATGC
CTGCTGTAGCAAAATCACAAGCGTCTTGCTGAGTTTATGCAGTTCTGCAG
CCTCAACTCAGTCGGTGTTGCTGGCTCTCCCACGGGCCTCGTGTCGTGTT
TCGCGTCAACAGCGTAGCCGGCCTGGCGTGATGTTCGTGGTGCGGCGGTT
GGTGTTTTTTCTTTCCCTCCGCCGTACTAGGCCGGTTGGTGGTTATCAGA
GTGGTGCGTCACAGACAAACGCTGTTGAATAGTATTGGTCAAATGTCCTC
ACCGCCTTGCATCGACATAACATTGGTGGATGGAGAGACGCCCAGGTGGC
GCTTCGGATGCCCGTCATTTCACGCGGACTCTTGCGTGGGGTTGGGAACC
GCACTCCGACTACTACACGATCGATTACGTGGCTTGAGATAGTTTTTTGC
GGCGGTGTCGTTGTTGATTCGACATCCGAGCACAGTCCTGTGGTCCGTGT
GCAGTGATAAGCTGCCATGCTATTATGTTGCATTTGTTACGTTAAGTCAA
ATGTTTCTCAGGAAGTTGATTGTCATCGTTGCTTTCCTTTTTTCCCCCTG
CCCCTTGTTGGTGTCGTGTGCAGGAGCGCTTCGACCGCCTCCGGTACGTG
GAGATCAAGCACGGCCGCATCGCAATGCTCGCCATCCTCGGCCACATCAC
CGCCCAGAACTTCCGGTTCCCCGGCATGCTCGCCCCGTCCGCGAACCTCG
CGTTCGCCGACTGCCCCAACGGTCTCGCCGCCATCTCCAAGATCCCCCTC
TACGGCCTGGCCCAGATCTTCCTTTTCATCGGGTTCCTTGAGACCAAGGT
GTGTGCGTGTGCGGAGGTGTCGGCGTTTCGTCAACTAGAACTAAAATGTT
GCGAGAACAACGCAGGCGGGCCTCGCATTTTCTTGTTGGTGCCCTTGGGG
TCGACTCCTGCCTGGAGGTGTGGATTGGTTGCAACTTTGGGCCCTCGCTG
CCAGGGGCGAAAGTCCCCGGCGATCTTTGGTTGTGCTCTGTTCACCCAAG
TTTGTTTTTATGCCCTTGCAGTCCACGGATGCCTGACTCACTCGCCTCTT
GGCCCTTGTAGTTCCCAGCCCTTTCCCGTGGCTGGCGTTGCCTCCAGAGC
ATCATGGCAGCGTTTTTTTTTTTGTCGTTCAGTATCTTTGCTCTGTCAAG
ACGCTATCTGACCAAGTACTTGAGCCACCTCCTGACGCGAAGACATGTGC
GGTGCCGGAAGCACTGACCTCTGAGCTGCCCCTGCCCTTGCTCGGCTTGT
ATGCGTTTTCAGGTTATGTTGCAGAAGGAGGGGTCTTTCCCCGGAGACAT
GTCGCTCATCAACCCCTTCGAGAAGGAGTGGGAGTCATGGACGGAGGAGG
AGCAGGCCAATAAGAGGGCGATCGAACTCAACAATGGCCGCGCGGCGCAG
ATGGGCATCCTCGCCCTGATGGTGCACGAGCAGATCGACAACACCCCCTA
CGTGATCAACGAAATCCTCGGCTCGCACGTCCAGTTCAACTAGAGCGGAG
GGAGGACCAACCGGTCACCCCGTTTACTTTTCGTGCTGGGGGCGTT

Coding sequence (CDS) from alignment at Scaffold_630:1107222..1113467+

>EsuBft353_5a-0001 ID=EsuBft353_5a-0001|Name=EsuBft353_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_630:1107222..1113467+ (Ectocarpus subulatus male Bft15b)
ATGAAGACTGCTTGTGCTATGGCGGCTGGTGTTGCGGCGTGCGCTGCGAC
GGCATCAGCGTTTGTTGCTCCTAGCGCGTTCAAGGGAGCGTCGTTGACCG
CCGCGAAGCCCGCGTCCTCGTCGATGAAGATGTCCTTCGAGAACGAAATC
GGAGCCCAGGCGCCCATCGGCTACTGGGATCCCCTTGGCCTTCTCACCAA
GGACCCCTCCCAGGAGCGCTTCGACCGCCTCCGGTACGTGGAGATCAAGC
ACGGCCGCATCGCAATGCTCGCCATCCTCGGCCACATCACCGCCCAGAAC
TTCCGGTTCCCCGGCATGCTCGCCCCGTCCGCGAACCTCGCGTTCGCCGA
CTGCCCCAACGGTCTCGCCGCCATCTCCAAGATCCCCCTCTACGGCCTGG
CCCAGATCTTCCTTTTCATCGGGTTCCTTGAGACCAAGGTTATGTTGCAG
AAGGAGGGGTCTTTCCCCGGAGACATGTCGCTCATCAACCCCTTCGAGAA
GGAGTGGGAGTCATGGACGGAGGAGGAGCAGGCCAATAAGAGGGCGATCG
AACTCAACAATGGCCGCGCGGCGCAGATGGGCATCCTCGCCCTGATGGTG
CACGAGCAGATCGACAACACCCCCTACGTGATCAACGAAATCCTCGGCTC
GCACGTCCAGTTCAACTAG