EsuBft353_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft353_2a-0001
Unique NameEsuBft353_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1165114..1168182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN28
ProteomeIdEsuBft353_2
Protein domainsCoil
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length157
Evalue2.88e-53
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2aEsuBft353_2aEctocarpus subulatus male Bft15bgeneScaffold_630 1165114..1168182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2a-0001EsuBft353_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1165169..1166942 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2a-0001-exonEsuBft353_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1165114..1165513 -
EsuBft353_2a-0001-exonagat-exon-103375Ectocarpus subulatus male Bft15bexonScaffold_630 1165851..1166127 -
EsuBft353_2a-0001-exonagat-exon-103373Ectocarpus subulatus male Bft15bexonScaffold_630 1166347..1166968 -
EsuBft353_2a-0001-exonagat-exon-103374Ectocarpus subulatus male Bft15bexonScaffold_630 1167908..1168182 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2a-0001-exonagat-three_prime_utr-13725Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1165114..1165168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2a-0001-cdsEsuBft353_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1165169..1165513 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft353_2a-0001-exonagat-five_prime_utr-8697Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1166943..1166968 -
EsuBft353_2a-0001-exonagat-five_prime_utr-8698Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1167908..1168182 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft353_2a-0001 ID=EsuBft353_2a-0001|Name=EsuBft353_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1574bp|location=Sequence derived from alignment at Scaffold_630:1165114..1168182- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTGGGTCGGCTGCACCTGCTAGAAACCGTTAGACAGCAGCTGTGCAA
CGACGGTCGCCCGATCCCTTGGGATGCAGAGAAGGGTCCGGGGAAGGACT
GGCTAGCTGCCTTCCTCAAGAGGCACCCACGGGTGTCGGAGCGCACGACT
CGCATCCACGAGTCAAACAGAATCATCGAGGACAAGGAGCCTCGCATCGT
CGAGTTCTACAAGAAGTGTGCAGCTCGACGAGCACAAGCCGGAGGCCGAC
CACGTGCACAACACGGACGAGACAGGTACCACACCGCAAGGCACGAAGAC
GATGAAGGTCTTCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGT
CCAACTCGCGAGAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGT
GCCACGTGGGCGCCAACCATTATCTTCAAAGGACAGCGACTCCAGCCTGA
CTGGTTCGCCGAGAGGAACGGCCCGAAGGATGCGAGGTACACGTGCACGG
ACTCTTCGTTCATGCAGGGCGACGTGTTCATCAATTACCTCAAGGACTTC
CACAAGCAGCTTGACGACCGAGGCGTGCTCGACCGAAAGCCTCACATCCT
CGTGCTTGATGGGCATGCCTCACACGTGAGCTACGAGGTAATCAAATTGG
CCATGGAACTCAACATCATCCTCTTCCAGCTGCCCTCCCGTACGTCGCAC
ATCACCCAGCCGTTAGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGT
GACTAAAGTGCTGCAAGACTACTGCCACGCAAACGGCGGGTTGTTACCGC
CGAAGCGTGACGTGCCCGGCGTGATCGCGGCGGCTTGGCAAAGGAGCTTC
ACACCGGAGCGGCACAAAGCATCCTTCGGCGGGCGGGGCTGTGGCCTAGG
AAGCGCGCCAAGAAACTGGCGACCTCGCGGGGCTCTTTGGNAAGACGATG
TCCCCATCGCCATGACCCACGAGCAGCTGAAAGAGGCCATCGGAGAGAGG
GGCCTGGGGCAGTTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGT
AGGCACGGTGATGCTCGGCGGTCTCCTGACTCGGAGGAAGCGCGCCAAGA
AACTGGCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAAGCAACATC
AACTCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAA
GGCAGAGGGCGAGGCGAAAGCGGAGAGGGGCAGGGAGCGCGCAAGAAGAA
GGAGAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGGCAGGCGAACGCGGG
GGGTCGAGGACGGGGAGGGGGCCGGGGACGCAACNNNNNNNNNNNGGGGG
GGGGGACGCGACCGAACAGGGGCTGGAAGAGGGGACTCACCTGGCCGTGG
TCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTCGCCCGTTCGCCAGCCGG
CACCCTCCTTGTCCCGGGTTGGACGGCAGCGGACGCCGACACCCGTTGTT
GACGTGTAGCCGCCTATGACGCTCTCCCTGGTTTGTTTTCTACCACACTC
AGAGTAGGACAAAACAAGCTAGAA
back to top

protein sequence of EsuBft353_2a-0001

>EsuBft353_2 ID=EsuBft353_2|Name=EsuBft353_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=405bp
MKVFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPD
WFAERNGPKDARYTCTDSSFMQGDVFINYLKDFHKQLDDRGVLDRKPHIL
VLDGHASHVSYEVIKLAMELNIILFQLPSRTSHITQPLDVVAFGTFKKEV
TKVLQDYCHANGGLLPPKRDVPGVIAAAWQRSFTPERHKASFGGRGCGLG
SAPRNWRPRGALWXDDVPIAMTHEQLKEAIGERGLGQLKAGGHTITGLKV
GTVMLGGLLTRRKRAKKLATSRGSLGLPDGSNINSEEFLAKVDAKERADK
AEGEAKAERGRERARRRRGGRGGGGAGTAGERGGSRTGRGPGTQXXXXGG
GDATEQGLEEGTHLAVVKERLQHKGRLRPFASRHPPCPGLDGSGRRHPLL
TCSRL
back to top

mRNA from alignment at Scaffold_630:1165114..1168182-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft353_2a-0001 ID=EsuBft353_2a-0001|Name=EsuBft353_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3069bp|location=Sequence derived from alignment at Scaffold_630:1165114..1168182- (Ectocarpus subulatus male Bft15b)
GCTGTGGGTCGGCTGCACCTGCTAGAAACCGTTAGACAGCAGCTGTGCAA
CGACGGTCGCCCGATCCCTTGGGATGCAGAGAAGGGTCCGGGGAAGGACT
GGCTAGCTGCCTTCCTCAAGAGGCACCCACGGGTGTCGGAGCGCACGACT
CGCATCCACGAGTCAAACAGAATCATCGAGGACAAGGAGCCTCGCATCGT
CGAGTTCTACAAGAAGTGTGCAGCTCGACGAGCACAAGCCGGAGGCCGAC
CACGTGCACAACACGGACGAGACAGGTGAGGATGTACTTGTTGACTAGTC
TAGTCTAGACTATTAAATAGTGTGGTATGAGCAGAAGCTGTAGTGTGCGA
GCTCGTGTGCGAAGACCGCGAAGATGGCATGTCAATGTCTTGCGGAGTTC
TGGTGTGCGGCCGAATTTTAAATGATACGGGGCGTCCTCCTGGTGTACGT
ACGTACTGCTGTGCTCTATCTCACCTGTGCTGTGCGCCCTCGCACCTGTT
CCGTGTTGCCGAAGTCGACGTTGGCTGTGGTCTAGAGTGGTCTAGAGTAG
AGTACAGCAGTAGTTCAGGCTGCAAACTACACAAATGTACCATAGAGAAA
GGGCTGTGTCGCATGGTCTTTGTGGCCGATTGTTCCGCAAGTCTACCTTG
CAGAAAGTGTAGCTTGCGGGTACAGCAGGACAGCGTGCATGTGTGTAANG
TGTTGCCGAAGTCGACGTTGGCTGTGGTCTAGAGTGGTCTAGAGTAGAGT
ACAGCAGTAGTTCAGGCTGCAAACTACACAAATGTACCATAGAGAAAGGG
CTGTGTCGCATGGTCTTTGTGGCCGATTGTTCCGCAAGTCTACCTTGCAG
AAAGTGTAGCTTGCGGGTACAGCAGGACAGCGTGCATGTGTGTAAATGAT
GTACAGCAGACGAGTCTAGTCTAGGACGAGTACCGAGCATAGAACAGGCA
CACCTTGCTGTTGCTCTTCCTGTTGCTAGTCCAGTCCAACCACCGCCGAC
GAAAGTAGACAAAGTAGGTGGCAGCTTGCTTCACGAAAAATACATGACCG
CCCTGCCCCTTCGGTGAAGCGCGGTCTATCCTGCTAGGAGCGCGGTAGCC
TGTCCATTGCATTGTGTTTGTGTGTGTCTAGTCTACACCTTTGCATTTTA
TATCTTCCGTAGCTGGTCACCTCCACCTACGCGATATGGCTCCCTCTCTT
GCGGGTGTAATTAGGTACCACACCGCAAGGCACGAAGACGATGAAGGTCT
TCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGTCCAACTCGCGA
GAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGTGCCACGTGGGC
GCCAACCATTATCTTCAAAGGACAGCGACTCCAGCCTGACTGGTTCGCCG
AGAGGAACGGCCCGAAGGATGCGAGGTACACGTGCACGGACTCTTCGTTC
ATGCAGGGCGACGTGTTCATCAATTACCTCAAGGACTTCCACAAGCAGCT
TGACGACCGAGGCGTGCTCGACCGAAAGCCTCACATCCTCGTGCTTGATG
GGCATGCCTCACACGTGAGCTACGAGGTAATCAAATTGGCCATGGAACTC
AACATCATCCTCTTCCAGCTGCCCTCCCGTACGTCGCACATCACCCAGCC
GTTAGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGTGACTAAAGTGC
TGCAAGACTACTGCCACGCAAACGGCGGGTTGTTACCGCCGAAGCGTGAC
GTGCCCGGCGTGATCGCGGCGGCTTGGCAAAGGAGCTTCACACCGGAGCG
GCACAAAGCATCCTTCGGCGGGCGGGGCTGTGGCCTGTGGACATGGATCG
AGCGCTGACCCGGCTTCAGGGCACGGCGAAGAGGAAAGAGGGGCCGACCG
GGCGCCCACCCCTAGAGGATGTCCCCATCGCCATGACCCACGAGCAGCTA
GAAGAGGTCATCGGAGAGAGGGGCCCGAGGCAGTTGAAGGCGGGAGGACA
CACCATTACCGGACTCAAGGTAGGCACGGTGATGCTCGGCGGTCTCCTGT
CTCAGAGGAAGCGCGCCAAGAAACTGGCGACCTCGCGGGGCTCTTTGGNA
AGACGATGTCCCCATCGCCATGACCCACGAGCAGCTGAAAGAGGCCATCG
GAGAGAGGGGCCTGGGGCAGTTGAAGGCGGGAGGACATACCATTACCGGA
CTCAAGGTAGGCACGGTGATGCTCGGCGGTCTCCTGACTCGGAGGAAGCG
CGCCAAGAAACTGGCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAA
GCAACATCAACTCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGC
NCGAGGCGAGGAGGGCGAGGAGGGCGAGGAGGGCGAGGAGGGCAAGGGAG
GCGCGAGATGGGGGAGGGAAGTGAGGCTACCGGGCAAGGGAGAGGGCGGG
GGGCGGCGGGGGGGGGGACGCGGCCGAACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGCAG
AGGGCGAGGCGAAAGCGGAGAGGGGCAGGGAGCGCGCAAGAAGAAGGAGA
GGCGGCCGCGGCGGCGGCGGCGCGGGCACGGCAGGCGAACGCGGGGGGTC
GAGGACGGGGAGGGGGCCGGGGACGCAACNNNNNNNNNNNGGGGGGGGGG
ACGCGACCGAACAGGGGCTGGAAGAGGGGACTCACCTGGCCGTGGTCAAG
GAGCGGCTGCAGCACAAGGGGCGGCTTCGCCCGTTCGCCAGCCGGCACCC
TCCTTGTCCCGGGTTGGACGGCAGCGGACGCCGACACCCGTTGTTGACGT
GTAGCCGCCTATGACGCTCTCCCTGGTTTGTTTTCTACCACACTCAGAGT
AGGACAAAACAAGCTAGAA
back to top

Coding sequence (CDS) from alignment at Scaffold_630:1165114..1168182-

>EsuBft353_2a-0001 ID=EsuBft353_2a-0001|Name=EsuBft353_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1218bp|location=Sequence derived from alignment at Scaffold_630:1165114..1168182- (Ectocarpus subulatus male Bft15b)
ATGAAGGTCTTCGCGGAGGCAGGGCAGAAGGTGGTTGAGTCGATGCGGTC
CAACTCGCGAGAGAACACCACCGTGGTCACCACCATCAGCGCCAATGGTG
CCACGTGGGCGCCAACCATTATCTTCAAAGGACAGCGACTCCAGCCTGAC
TGGTTCGCCGAGAGGAACGGCCCGAAGGATGCGAGGTACACGTGCACGGA
CTCTTCGTTCATGCAGGGCGACGTGTTCATCAATTACCTCAAGGACTTCC
ACAAGCAGCTTGACGACCGAGGCGTGCTCGACCGAAAGCCTCACATCCTC
GTGCTTGATGGGCATGCCTCACACGTGAGCTACGAGGTAATCAAATTGGC
CATGGAACTCAACATCATCCTCTTCCAGCTGCCCTCCCGTACGTCGCACA
TCACCCAGCCGTTAGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGTG
ACTAAAGTGCTGCAAGACTACTGCCACGCAAACGGCGGGTTGTTACCGCC
GAAGCGTGACGTGCCCGGCGTGATCGCGGCGGCTTGGCAAAGGAGCTTCA
CACCGGAGCGGCACAAAGCATCCTTCGGCGGGCGGGGCTGTGGCCTAGGA
AGCGCGCCAAGAAACTGGCGACCTCGCGGGGCTCTTTGGNAAGACGATGT
CCCCATCGCCATGACCCACGAGCAGCTGAAAGAGGCCATCGGAGAGAGGG
GCCTGGGGCAGTTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTA
GGCACGGTGATGCTCGGCGGTCTCCTGACTCGGAGGAAGCGCGCCAAGAA
ACTGGCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAAGCAACATCA
ACTCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAG
GCAGAGGGCGAGGCGAAAGCGGAGAGGGGCAGGGAGCGCGCAAGAAGAAG
GAGAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGGCAGGCGAACGCGGGG
GGTCGAGGACGGGGAGGGGGCCGGGGACGCAACNNNNNNNNNNNGGGGGG
GGGGACGCGACCGAACAGGGGCTGGAAGAGGGGACTCACCTGGCCGTGGT
CAAGGAGCGGCTGCAGCACAAGGGGCGGCTTCGCCCGTTCGCCAGCCGGC
ACCCTCCTTGTCCCGGGTTGGACGGCAGCGGACGCCGACACCCGTTGTTG
ACGTGTAGCCGCCTATGA
back to top