EsuBft3514_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3514_2a-0001
Unique NameEsuBft3514_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:3578..8271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LED4
ProteomeIdEsuBft3514_2
Protein domainsIPR001283
Protein domainsIPR014044
Ownerapollo_admin@sb-roscoff.fr
Notepathogenesis-related protein 1a os:nicotiana tabacum pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1871
Hectar predicted targeting categorysignal peptide
Evalue6.64e-25
EggNOG OGs2E9TD@1|root,2SG44@2759|Eukaryota
Ec32 ortholog descriptionSCP / PR1-domain containing protein
Ec32 orthologEc-07_002140.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMetallo-peptidase family M12B Reprolysin-like
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0014070
GO0009719
GO1901700
GO0044699
GO0001101
GO0098542
GO0050794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3514_2aEsuBft3514_2aEctocarpus subulatus male Bft15bgeneScaffold_176 3578..8271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3514_2a-0001EsuBft3514_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 4711..8271 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3514_2a-0001-exonagat-exon-76644Ectocarpus subulatus male Bft15bexonScaffold_176 3578..4783 -
EsuBft3514_2a-0001-exonEsuBft3514_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 5173..5326 -
EsuBft3514_2a-0001-exonagat-exon-76646Ectocarpus subulatus male Bft15bexonScaffold_176 5940..6108 -
EsuBft3514_2a-0001-exonagat-exon-76645Ectocarpus subulatus male Bft15bexonScaffold_176 6919..6976 -
EsuBft3514_2a-0001-exonagat-exon-76643Ectocarpus subulatus male Bft15bexonScaffold_176 7709..7903 -
EsuBft3514_2a-0001-exonagat-exon-76647Ectocarpus subulatus male Bft15bexonScaffold_176 8183..8271 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3514_2a-0001-exonagat-three_prime_utr-13649Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_176 3578..4710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3514_2a-0001-cdsEsuBft3514_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 4711..4783 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3514_2a-0001 ID=EsuBft3514_2a-0001|Name=EsuBft3514_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1871bp|location=Sequence derived from alignment at Scaffold_176:3578..8271- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTAGCACGGACCGTTTTTCCGATCTCCTCGGCCGCCTGCCTTTC
AGGGGGGAGCAGTGGATTGCACAAGATACTTTACGTATGGGGTGGAGTCG
GCGTGTGCGACACCTGGTGCGGGGGCGACGGCAGCACTACCTGTGGAGGA
TCGGACGGATTGTCGCGCGATTATTACAAGATTGAAACCGGCGAGGCCAC
CTTGGGTGTCAGCGCCGCGGGTGACGGCGCCAGCAACAGCGCCGATCCGT
TGGACAGGCTGCTGGAGCTCCACAACGCGGCGAGGTGCATGCACGCCACG
GGACCCCTGGAATTCGCCGAGCCAGTTGCAGCGACGGCGAAGACGTACGC
CGACGTCCTTGCGAGCGAGTCCATGTGCGGGTCGGCGGAAGCCGCACACT
CCACCGGCCTCGGGGAGAACGTATTCGTGTGCGCCGCCTCGTCGTCTTTT
TCGGGAAATGGTGCCCCTACCTCTGCGTGCTTCTCGCCCGAGATTGCCAT
GGAGGCGTTCTACGACAGCCAGGTCGGAGGCGGGTCCACGTCCACCTACG
GCCCGTACGCCACCCAGGTGCTGTGGAAATCCACCACCCAGATAGGGTGC
GCGTTGAGAGCCTGCGAAAAGGAGGGGTTGACGTACGACATCTTGGTCTG
TCGATACTCCCCCCCGGCTGGAGAGGACGCCACCGAAAGCGAGGTAGCCC
TCGAAGCCAACAGCAAAACCACGTGCGGATACGAGTAGCAGCATGGCCGG
CTGTTTATTTTGCGGGATGGGGCACTTTGAAACGACTCGAATCGTTTGCC
GCCTCGGGTAGCCGTTTGGATAATCCTTCTGGCGATGCACAGGAGCCCGA
AGGCGTGATGCTTCATGGGTAGAAGGGATCGGGTCGGCCCGCGAAGACGC
CTCCGTATTTAAGTGTGTTCCATGGATCGGAGCCAAACGTCTCGAAGCGA
CCGACATGTGAGCGGCTCTGAAGCTATCCGGCAGGCAGGTTCCCGGAAAC
GTTAACCTGACAAAGATTGTTTCGGAGAAGAGCCGGTGTTCCCGGCAGAA
CAACGATATCTAGCCTGTACGTATCTATACCTGGTCTGTACGTATCTGTA
CCGCCTGTGTAAATGATCTAGTTATGACTGCGTTCCTCCAGGCTCCTTGC
ATCATTTGTCCAGTTTCCGATGCCAATAATTTACCTAGTTTTTCGCCTGG
TTTGGTTCCCTCGTGGCCATAGTTCACGTTTGCTGTTTTGTTGTCTCATC
GGATGCCCCAAAGTGCAGCCCTGTAAGCGACGTGTTTCGTCTTCTTTCGG
GCATGTGTTTGGCGTGCTGCTGCCCGGGTGCTGTCAGTGCATTTATAGCT
GCAAGAGGTGCGGTTTGGGGAAGGGGAAGCAACATTGTTTTCGGTACGCG
TTTGCACTAAACCTTTTTCGGAGGAAAATCGAGTGGTGTGGTAGTTCAAT
ATGTTGCGTTGTAGTGATGTGTTGTCGGCGCTGCTCCATCAACGACCGTT
TGTTTCTCGGTTTCGTTTTTGTTCATTTGCGGTCAGTTGAGTCAACTTAA
AAGTAGTGTAATTTGGTGTGGTGTTGTTGGGGGAAGTACAGTAGGCGTTT
GGGCGAACTGCGGTTGTGCGATTTTCGGGCGGCTTCGTGTTCGCTTGCGT
TATGATGGAGGGTAGACTAACCCACGCCCTTCTTGGGCGGGACGAATTTG
TTGGCGTCGAATTGCTGCGGTCATCTTTACAGGCTTCCATGGCAGCTGTT
CAAAACAGGTTGAGGGCAGCTCCCATGGAAGTATTCCGCCTTGGGTTCGC
TTCCACGGTGGTTTCGGGGTTGGGGTGGAGGGTGTGGGTTAGGGTTAGGG
TAGGGAAGCTGGTATGATCAG
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protein sequence of EsuBft3514_2a-0001

>EsuBft3514_2 ID=EsuBft3514_2|Name=EsuBft3514_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MLVARTVFPISSAACLSGGSSGLHKILYVWGGVGVCDTWCGGDGSTTCGG
SDGLSRDYYKIETGEATLGVSAAGDGASNSADPLDRLLELHNAARCMHAT
GPLEFAEPVAATAKTYADVLASESMCGSAEAAHSTGLGENVFVCAASSSF
SGNGAPTSACFSPEIAMEAFYDSQVGGGSTSTYGPYATQVLWKSTTQIGC
ALRACEKEGLTYDILVCRYSPPAGEDATESEVALEANSKTTCGYE
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mRNA from alignment at Scaffold_176:3578..8271-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3514_2a-0001 ID=EsuBft3514_2a-0001|Name=EsuBft3514_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4694bp|location=Sequence derived from alignment at Scaffold_176:3578..8271- (Ectocarpus subulatus male Bft15b)
ATGCTTGTAGCACGGACCGTTTTTCCGATCTCCTCGGCCGCCTGCCTTTC
AGGGGGGAGCAGTGGATTGCACAAGATACTTTACGTATGGTACCTTCTTG
TGTCCCTCTCTGATAGTGGGGTCTTTGTTTGTCGCTCGGTTCCTGTTAGT
CGAAGACACATCTTCACGCCCCCCTCTCCCTCTCCGTCCCTCTCTGTGCG
GCATGTGTATCGAATTGATCGCCGGCATAATTCACAACGATACCCAGTAG
ATGCGTGCCATCACATCGCTAGTGCGTGACAAGAGTGTACGCACGAAGGG
CGTTCGGTTTTCTTCACCTTCCCTCGTCGAAAATAAAGCATACTCTTAAT
ACCGTCGCCAAAACTCAGGGGTGGAGTCGGCGTGTGCGACACCTGGTGCG
GGGGCGACGGCAGCACTACCTGTGGAGGATCGGACGGATTGTCGCGCGAT
TATTACAAGATTGAAACCGGCGAGGCCACCTTGGGTGTCAGCGCCGCGGG
TGACGGCGCCAGCAACAGCGCCGATCCGTTGGACAGGCTGCTGGAGCTCC
ACAACGCGGCGAGGTGATTTTTTCGTTTGGAGTCTGGACCCGGTCCGTAG
GTGGTTGTGGGAGTGTTTTTTTTACACACGTCAGAGAGGCAGTCTACACC
CCCCGCCGCTGGCGCTCGGTCTCTCGCACGCTTTCGTCTGTTTTGGTGGT
GTACTCGACGGACGGCGTTTTGGTTGTGTTTGAACGGTGCTGGTTTATTT
TCCCTTTCGGACGCACCACGCACATCCGAGCTAAAACCCGCGCCGTTTGC
GCGAGCTGAAGGTGTCGTGCATAGCGGGGCATTCTGGCGTGTACATGCGC
GGCCACCGGTTGTTTTTTGTTCACTATGTGGTTTGCGTTGTTTTTGTCAA
TGTTGGTGCTCTCGCTGCTACTGCCATTCGTTCGACCGCATGTCTGAGCC
CGGGAAACTCTTGCCCGTTGTTGGCGTGGGCATACGGCGTAAACGAGAAG
TACCGGGCGCCGGGATCCCCGGAACGATACCGGACACGAAATACGTAGCG
TTGTGTTTCTGTTGTTGAGATGCGCATCACGGTTCCATACGATGATCAAC
AGCGTTACGTATCTCCATTCATTCGAATCTGCGGACGGGTGGGGGACTCT
TGACGATAGTTGGCGGAATCTTTCAACATTGACATTTTGGCGGGAGGGGG
ACGGGGTAGCAGGAGGAGGCTTGGTTCAGGGCTGCTTCTGTTGTGTGTCA
AAATTTGTCGACGAGGCGTTGCTTCTCTCTCCGTGTGCGACGCAGGTGCA
TGCACGCCACGGGACCCCTGGAATTCGCCGAGCCAGTTGCAGCGACGGCG
AAGGTGAGCAAACGGAATCACACATATCGGCTACACGCCCGTTCTACATA
AGTTATTGAATGCGGCTATATTTGCCTTGTCAGAGAGGATATTGGACGGG
TTTCAGATTGCGGCACGAAATCCTATACAATGCAGAGCAAGTAGGGTTTG
TTATAGGCACGCAAAATTCAGTAGTGTTCTGCTGCAAGCAAGTGGCCCGG
CAAAGTGGTCGTTCTGGGCGAGGGCGGGGAGCGTGGGAGAGTCGGCCATA
CGTGTTGGACCAAGGTTGCTGCCCTCCACCACGTCCAGAGTAGGCTGAGT
GAGCAGCAGGAGCAACGACAACAAGCGCAGCAAGAGAAAATGGGGCTCAA
CACTTTGCCCCCCCCCCGCCGGTGTTTGCCATCGGGATTGGGTTTTCGTC
GCTTGGCAACGACGTTGTAAAACAAGCTATTTCACTTCGTGAACTCGGCA
ACCAGGTTACCGTTTTTTTTTTGTTACCTCCGTTTTTTTTATTGGCTGTA
ACCATAATGGTGGTCGAGTGGATCATGATGTGCGGGGTGGACAATCCTCA
CTCCGCACAGGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCA
CCCTCGAGGCAGTTACACAGTGCTTACAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCG
TGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTAC
GGCATGCACGACTATGAGTACACCCCCCCCGCCTGCCTGCTCCCTGTCTT
GCCGAGGGCGCAGACGTACGCCGACGTCCTTGCGAGCGAGTCCATGTGCG
GGTCGGCGGAAGCCGCACACTCCACCGGCCTCGGGGAGAACGTATTCGTG
TGCGCCGCCTCGTCGTCTTTTTCGGGAAATGGTGCCCCTACCTCTGCGTG
CTTCTCGCCCGAGATTGCCATGGAGGCGTTCTGTGAGTCCTGACAACCTT
GCTATTGACAGGGAGGGAGAGAGAGAGAACGAACATCGAGCGGACGCGTG
GTTTCGTTCTGGGTCTTCTCGTCGATGCACTTAGAATCGCCCCACGCGTT
GTCGTTGTCGTTGTCGTTGTCGTTGTCGGTGTCGTAGTGGGTGTTGACCT
TTTCGGTTTTTGATGTGATCGTGTCGAGTGCTGCCCCTGTAGCACTATTG
TTTCTTTCCACCGCTACTGATGTACCACGGTTAAGTGGACACTACGGGAG
AAGAAACGAGAGCTACAAGTAAATGGCTACTGGTTGTAGATGATAGGCAG
CGGCCACAGCGCCCGCGGGGGCGGAAAAGGTGACTGGGCACGCAGCACGT
CCCTGCGGCAGTGTAACGCACGGCGGAAGCGTCTTCGACTGCAGCCATCC
GGTAGTTGGCGGCGTCCCTCTCTACGTGGGGGGCACGAACGCGGTTCATG
TTGGGCGCTCTGTCCGTTTCGAATGAGGTTGCGCTGGCAGTCAATCAATC
AAGCAAGCCGGCAGCGAACGAAAGAAAGGAGATTACACCGCCGCCCCCCT
CCTGACACCGTTGCCCCGTGCATTCGGTCGACTCCAACGCTTCAGACGAC
AGCCAGGTCGGAGGCGGGTCCACGTCCACCTACGGCCCGTACGCCACCCA
GGTGCTGTGGAAATCCACCACCCAGATAGGGTGCGCGTTGAGAGCCTGCG
AAAAGGAGGGGTTGACGTACGACATCTTGGTCTGTCGATACTCCCCCCCG
TGAGTAAATAACGCCTTCTAAGATGTAGAGCTATGCACAGTAGCTGGTTT
GGAAAGTTCGCGCATAGGGCCTCAGCTGCCGGTGCCTGTGTCTGCCCCGC
CTCTTTGTTTTCAGTGATGGCGGATTCGGATGTTGTGATGTGTAAGCACT
AGCACGACGCGAGTGCTCTCGTGCTTGTTTATCTGCCCGCCGGCCCACAG
ACGCGCACGCCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGCTCTCTGCCTTCTTCGGT
TGTCACGCATGATGTTTTCTGTCTGGCGCTCTTGGCAGGGCTGGAGAGGA
CGCCACCGAAAGCGAGGTAGCCCTCGAAGCCAACAGCAAAACCACGTGCG
GATACGAGTAGCAGCATGGCCGGCTGTTTATTTTGCGGGATGGGGCACTT
TGAAACGACTCGAATCGTTTGCCGCCTCGGGTAGCCGTTTGGATAATCCT
TCTGGCGATGCACAGGAGCCCGAAGGCGTGATGCTTCATGGGTAGAAGGG
ATCGGGTCGGCCCGCGAAGACGCCTCCGTATTTAAGTGTGTTCCATGGAT
CGGAGCCAAACGTCTCGAAGCGACCGACATGTGAGCGGCTCTGAAGCTAT
CCGGCAGGCAGGTTCCCGGAAACGTTAACCTGACAAAGATTGTTTCGGAG
AAGAGCCGGTGTTCCCGGCAGAACAACGATATCTAGCCTGTACGTATCTA
TACCTGGTCTGTACGTATCTGTACCGCCTGTGTAAATGATCTAGTTATGA
CTGCGTTCCTCCAGGCTCCTTGCATCATTTGTCCAGTTTCCGATGCCAAT
AATTTACCTAGTTTTTCGCCTGGTTTGGTTCCCTCGTGGCCATAGTTCAC
GTTTGCTGTTTTGTTGTCTCATCGGATGCCCCAAAGTGCAGCCCTGTAAG
CGACGTGTTTCGTCTTCTTTCGGGCATGTGTTTGGCGTGCTGCTGCCCGG
GTGCTGTCAGTGCATTTATAGCTGCAAGAGGTGCGGTTTGGGGAAGGGGA
AGCAACATTGTTTTCGGTACGCGTTTGCACTAAACCTTTTTCGGAGGAAA
ATCGAGTGGTGTGGTAGTTCAATATGTTGCGTTGTAGTGATGTGTTGTCG
GCGCTGCTCCATCAACGACCGTTTGTTTCTCGGTTTCGTTTTTGTTCATT
TGCGGTCAGTTGAGTCAACTTAAAAGTAGTGTAATTTGGTGTGGTGTTGT
TGGGGGAAGTACAGTAGGCGTTTGGGCGAACTGCGGTTGTGCGATTTTCG
GGCGGCTTCGTGTTCGCTTGCGTTATGATGGAGGGTAGACTAACCCACGC
CCTTCTTGGGCGGGACGAATTTGTTGGCGTCGAATTGCTGCGGTCATCTT
TACAGGCTTCCATGGCAGCTGTTCAAAACAGGTTGAGGGCAGCTCCCATG
GAAGTATTCCGCCTTGGGTTCGCTTCCACGGTGGTTTCGGGGTTGGGGTG
GAGGGTGTGGGTTAGGGTTAGGGTAGGGAAGCTGGTATGATCAG
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Coding sequence (CDS) from alignment at Scaffold_176:3578..8271-

>EsuBft3514_2a-0001 ID=EsuBft3514_2a-0001|Name=EsuBft3514_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_176:3578..8271- (Ectocarpus subulatus male Bft15b)
ATGCTTGTAGCACGGACCGTTTTTCCGATCTCCTCGGCCGCCTGCCTTTC
AGGGGGGAGCAGTGGATTGCACAAGATACTTTACGTATGGGGTGGAGTCG
GCGTGTGCGACACCTGGTGCGGGGGCGACGGCAGCACTACCTGTGGAGGA
TCGGACGGATTGTCGCGCGATTATTACAAGATTGAAACCGGCGAGGCCAC
CTTGGGTGTCAGCGCCGCGGGTGACGGCGCCAGCAACAGCGCCGATCCGT
TGGACAGGCTGCTGGAGCTCCACAACGCGGCGAGGTGCATGCACGCCACG
GGACCCCTGGAATTCGCCGAGCCAGTTGCAGCGACGGCGAAGACGTACGC
CGACGTCCTTGCGAGCGAGTCCATGTGCGGGTCGGCGGAAGCCGCACACT
CCACCGGCCTCGGGGAGAACGTATTCGTGTGCGCCGCCTCGTCGTCTTTT
TCGGGAAATGGTGCCCCTACCTCTGCGTGCTTCTCGCCCGAGATTGCCAT
GGAGGCGTTCTACGACAGCCAGGTCGGAGGCGGGTCCACGTCCACCTACG
GCCCGTACGCCACCCAGGTGCTGTGGAAATCCACCACCCAGATAGGGTGC
GCGTTGAGAGCCTGCGAAAAGGAGGGGTTGACGTACGACATCTTGGTCTG
TCGATACTCCCCCCCGGCTGGAGAGGACGCCACCGAAAGCGAGGTAGCCC
TCGAAGCCAACAGCAAAACCACGTGCGGATACGAGTAG
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