EsuBft3498_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3498_2a-0001
Unique NameEsuBft3498_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:518454..521142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3498_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length66
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3498_2aEsuBft3498_2aEctocarpus subulatus male Bft15bgeneScaffold_129 518454..521142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3498_2a-0001EsuBft3498_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 518454..519439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3498_2a-0001-exonagat-exon-112452Ectocarpus subulatus male Bft15bexonScaffold_129 518454..518824 -
EsuBft3498_2a-0001-exonagat-exon-112453Ectocarpus subulatus male Bft15bexonScaffold_129 519164..519171 -
EsuBft3498_2a-0001-exonEsuBft3498_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 519378..519497 -
EsuBft3498_2a-0001-exonagat-exon-112451Ectocarpus subulatus male Bft15bexonScaffold_129 520976..521142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3498_2a-0001-cdsEsuBft3498_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 518454..518824 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3498_2a-0001-exonagat-five_prime_utr-8580Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 519440..519497 -
EsuBft3498_2a-0001-exonagat-five_prime_utr-8581Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 520976..521142 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3498_2a-0001 ID=EsuBft3498_2a-0001|Name=EsuBft3498_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=666bp|location=Sequence derived from alignment at Scaffold_129:518454..521142- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCGTGCATGTAGCAACCCGGGGACAATAATTTAGGCCCCTTTTCCGCCC
CACTTTCATCACGCTCGCATACGACAACCGGGGCGGAGCCCGCTGTCGTA
CTCGCAGGGCAGGACCACACCATCACAAGGGAGGTTTTTTGCCAGGACAG
CGCGGGATTTATTCACGGCTGAATTGATGCCTTTAACGCGGGGGAAAGAT
ACGGGGGATTCGAGGAAACGAGCGCATGCCACGTCCAGCTCGAGCCATGT
TCCGGTTGAGAGCAGTCGCGTCGCTCCGAGACAACGGGGACGATGGGAAC
TTCGGCCGGTCGGACTACGCGCGCAAGAACGGCCTCGACAAGATGGTGGG
CTACATCAGATCGGCCGACGACTCGAAACTAGAAGAACTCATGGACATCC
TGCGGTTTTTCGACGAGTGGCGGGCCTCGCTGGAGGCTAGACCGACGCTG
GGCGGCCGCGCCTGGAAGGCGTACTTCATCACCGACCACTCGTGGACCGA
CATCCGGGTGTGCATCCTCGGCACCGTGTATGTGTCGATACCTGTTCGAG
AGAGACTCGAGGTCCAAGATCTCCCCGTTGAGCGATGTTCCCCACTTCAT
CAACCTTCGCTATATAGGCCAGGTATTACGTGCAAACAAGCTAGGCCGGC
CCGAGATGCGGCATAG
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protein sequence of EsuBft3498_2a-0001

>EsuBft3498_2 ID=EsuBft3498_2|Name=EsuBft3498_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MPRPARAMFRLRAVASLRDNGDDGNFGRSDYARKNGLDKMVGYIRSADDS
KLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGT
VYVSIPVRERLEVQDLPVERCSPLHQPSLYRPGITCKQARPARDAA
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mRNA from alignment at Scaffold_129:518454..521142-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3498_2a-0001 ID=EsuBft3498_2a-0001|Name=EsuBft3498_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2689bp|location=Sequence derived from alignment at Scaffold_129:518454..521142- (Ectocarpus subulatus male Bft15b)
GGCGTGCATGTAGCAACCCGGGGACAATAATTTAGGCCCCTTTTCCGCCC
CACTTTCATCACGCTCGCATACGACAACCGGGGCGGAGCCCGCTGTCGTA
CTCGCAGGGCAGGACCACACCATCACAAGGGAGGTTTTTTGCCAGGACAG
CGCGGGATTTATTCACGGTGAGTCCTTGTGCCATGACCTCGTGAGGGCAA
GACCCCGAGGTAGGTGCGAGCCGGAATCCGACTACCCCGCACGTCGCAGG
CGGGTCTGTCTCGCTGGAGTGGGGGCACTTCCTGCCGTCGCGTGTGCCGT
CAGTACATGTCTCAGGCTCTCTTGGGAAGAAATCCGTCTGGAAAATGGTC
TCGTGTACACAGATTACTCGCCAAAAATGCGGACCATAATCTCACCCCCA
AGCGAGGGACCCTCTCCCAGAGAAAGCAGCAGCAGCAGCAGCGTTTTTTT
TTTCACACAAAATGCATGCGCATGTTTTTCGCCTCGGATGAAAGTGGGGC
GTGTGCAACTCCAGAACACGCCGATGACGACCCGGATGGGCTAAATAAAC
ATAGGGCCTTCTGTCCCTCTACTTTTAACTTTGATGCTGTGGTGCGACCA
CGAGTCTCCGAGACAGTATGATGAGNAAATGCATGCGCATGTTTTTCGCC
TCGGATGAAAGTGGGGCGTGTGCAACTCCAGAACACGCCGATGACGACCC
GGATGGGCTAAATAAACATAGGGCCTTCTGTCCCTCTACTTTTAACTTTG
ATGCTGTGGTGCGACCACGAGTCTCCGAGACAGTATGATGAGGGTTATTG
TTCTCCCGTATCTTGAACGCTGAAGGTGAGATGCATGTACGCGCATGTTG
AGCGCATCGTCACAGGTGTAGATGGACTCTGTGACACACATGTACCGGTG
TACGTGCATGGCGGTGTCATTTTGCGGTTCGTGAACGCGTGAGCCCTGCC
GACCACGGATTCTAACCTTCAATCTTACGCCGTAATGTCAGCTGTAGTAG
TTAGGCTCGGAGGCACTGCCGATCATGGGAGATGACGACATAAATGATAT
ACACATATCTCACACATTGCTACTCCTGATCCGGTCGATGTGTACTATAA
TAGGTACATACGAGAAGAGAGCAAAATGCATTCGCCAGAAGTGCATGGAT
TGTGGTAAAAAAAAATGCGTTTTGGTTTTGGATATGCGGACCGTTATTCC
CTCTCAGTTCCTCCCTGTTGAAAGAGGCAGTTAGCCATGTGGAGATCACG
TTGACGGGCACCCTGTCGCTTGTGGTAGGTATGCCTTGTACTCGATGTTC
CGCGCCCGAGAGGGCTCTTGCTGACCGTGAGTGCAGACAATATTTAAGTA
TTGAGGCTTTACAATACAGATTTTACAAATACACTGTCTATCAATATTAT
CGTTATACGTGTAGTACAATGTATCTAAACTACTGATGTATCTACTGCCG
CGAAGAGAAGCGGAAACCTTCCGCATTCCGTGCCCCCGCGGGATTATACT
ACAGCTTAGGCGACGGGCGCTAGCGGCATTTTCACGGTGGTTGTGTGTGC
CGGATCTCATAACTTGATCCGTGAACATGTGCATGCATAAAATATTTCCA
AGTTCCGGTGTACGTTATCATCCCCACTGCGATGGCTTCCGACAGGCTGA
ATTGATGCCTTTAACGCGGGGGAAAGATACGGGGGATTCGAGGAAACGAG
CGCATGCCACGTCCAGCTCGAGCCATGTTCCGGTTGAGAGCAGTCGCGTC
GCTCCGAGACAACGGGTAAGTGCTACACCATAGAGTCCGGGGGAACGGGT
TAGGACCCATGTCTCCAGCGTTCTTGAATACCCTGGTCTAGTCTGCGGTG
CGATATATGATCGTGTACACGAAACGCGCGAAGACGACTCCGAGAGGGGC
GCACGCAGTCCCGATCCACCTCTTGTCCGACCCGTTTATTATGGCGTTCG
TCATTGTATAGGTGCTATCAGGGACGATGGTACGTATCATCGAGCAGATC
CAGCGCGACCTCTTGACCGAGGGAAACCCCCCGAGTTGGAATTGGGGTGC
TACGCGGCACTCGCGTCGAGGATGGACGCCTTCGTCGACATCGTCAACGG
CAAGTCATAAATCTTCTTTTTATCCCAAGTCATACTGCTCGTTCCCGTCG
CGGTACAGTACGTGAAAGGGCCTGTCGCCTGCCAACTAGTTTCCTATATT
CCTTGTAGCCATGAGCATTGCGTTCTCTCCGTGCGCGCCATATTTCGCCT
TCTCACCCGACAGACCCACTGCCCCCATGGGAATGTGTGCGTGTTTGTGT
GTGTGCGTATACATGCAGGGAACTTCGGCCGGTCGGACTACGCGCGCAAG
AACGGCCTCGACAAGATGGTGGGCTACATCAGATCGGCCGACGACTCGAA
ACTAGAAGAACTCATGGACATCCTGCGGTTTTTCGACGAGTGGCGGGCCT
CGCTGGAGGCTAGACCGACGCTGGGCGGCCGCGCCTGGAAGGCGTACTTC
ATCACCGACCACTCGTGGACCGACATCCGGGTGTGCATCCTCGGCACCGT
GTATGTGTCGATACCTGTTCGAGAGAGACTCGAGGTCCAAGATCTCCCCG
TTGAGCGATGTTCCCCACTTCATCAACCTTCGCTATATAGGCCAGGTATT
ACGTGCAAACAAGCTAGGCCGGCCCGAGATGCGGCATAG
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Coding sequence (CDS) from alignment at Scaffold_129:518454..521142-

>EsuBft3498_2a-0001 ID=EsuBft3498_2a-0001|Name=EsuBft3498_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_129:518454..521142- (Ectocarpus subulatus male Bft15b)
ATGCCACGTCCAGCTCGAGCCATGTTCCGGTTGAGAGCAGTCGCGTCGCT
CCGAGACAACGGGGACGATGGGAACTTCGGCCGGTCGGACTACGCGCGCA
AGAACGGCCTCGACAAGATGGTGGGCTACATCAGATCGGCCGACGACTCG
AAACTAGAAGAACTCATGGACATCCTGCGGTTTTTCGACGAGTGGCGGGC
CTCGCTGGAGGCTAGACCGACGCTGGGCGGCCGCGCCTGGAAGGCGTACT
TCATCACCGACCACTCGTGGACCGACATCCGGGTGTGCATCCTCGGCACC
GTGTATGTGTCGATACCTGTTCGAGAGAGACTCGAGGTCCAAGATCTCCC
CGTTGAGCGATGTTCCCCACTTCATCAACCTTCGCTATATAGGCCAGGTA
TTACGTGCAAACAAGCTAGGCCGGCCCGAGATGCGGCATAG
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