EsuBft3475_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3475_4a-0001
Unique Name	EsuBft3475_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:339398..343521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft3475_4
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	3625
Evalue	3.79e-43
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_4a	EsuBft3475_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 339398..343521 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_4a-0001	EsuBft3475_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 342211..343521 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_4a-0001-exon	agat-exon-85194	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 339398..339553 +
EsuBft3475_4a-0001-exon	agat-exon-85195	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 339633..342467 +
EsuBft3475_4a-0001-exon	EsuBft3475_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 342888..343521 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_4a-0001-exon	agat-five_prime_utr-8552	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_417 339398..339553 +
EsuBft3475_4a-0001-exon	agat-five_prime_utr-8553	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_417 339633..342210 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_4a-0001-cds	EsuBft3475_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 342211..342467 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:339398..343521+
coding sequence from alignment at Scaffold_417:339398..343521+

spliced messenger RNA

>EsuBft3475_4a-0001 ID=EsuBft3475_4a-0001|Name=EsuBft3475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3625bp|location=Sequence derived from alignment at Scaffold_417:339398..343521+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGATGTTGGATAGTGCCGGACACATAGACGCTTTGAGTGAGGAAAGACA
CATACTGGAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACACCCAG
ACGCGTTGAGTAAAGATACCTGCATACTGACACCTCAAAGATGGATTGGT
TGTTGATGCCGGACACATAAACGCGCTGAGTGAGGAAAGACACATACTGA
AACCTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTGGGGATAGCTACATACTGAAACCTCAC
GAGTTGAGTGACGTTGGATAGTGCCGGACACATAGACGCTTTGAGTGAGG
ATGGCTGCATATTGAGACCTAACGGGTTGAATGACGTTTGCGACTGCTGG
ACACATAGACGCATTGAGTGAAGAAAGCTGCATACGGAAATCTCACAGGT
TGATTTGTCTTGGACATTGCCGGACACATAGAGGCGTTGAGTAAGGATAG
CTGTATACTGAAAATCCACAGTAGCTATAGTGAGGGGACAATTCGAGAAT
GCAGTACACACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGTTCGCAAGGAGTGAGCGCAAGCGGTTGAAAATA
GTGGACCAAGTAGAACAAAGCGATCTAGATATAGTGGGGATCTAAGAGAC
GTGGGAATTGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCCACCGTCGTCG
AAGAAAGTCGCAAGCAAGGCGCAGGAGAACTTTCGACAAAGTGGGGAAGA
TGTCCAGTGGTCCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCA
ACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCAC
GGAGAAGACAAAGTGAATGACAACGGAGTGAGGATGCTTGAATTCTTGGG
AAGCAACGAACTGATGGTGTTGAACGGTAGGAGGGAATGCGATAAGCCGG
AGTTCACCAGGCAACGGACAGTTTGCAATGACTACTCAATCATCGACTAC
ATCCTGGTAATAGGGGGAGCACACAGATCCCAGAGCTGCACTGGGAAGGG
AAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCTCGG
AGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGGCC
CAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAACTAGA
AAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGT
GCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTT
GGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGGTGTG
GAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACT
TGTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACA
CTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGAT
AGTGGGAGTATTGGAGAAGGAACATAGCACTAGTGAGGGCCAGGCAAGTT
TGTGCAAGATGGGGTGCGTAGACCACGTATTTACGGTAGGGAGAATCATC
CAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGT
GAAAAAGGCATACGACACCGTNNNN

protein sequence of EsuBft3475_4a-0001

>EsuBft3475_4 ID=EsuBft3475_4|Name=EsuBft3475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRR
ECDKPEFTRQRTVCNDYSIIDYILVIGGAHRSQSCTGKGKREVLAGHYKR
LGVPSENEAFDQVFKKEVDAWAQKEEETSKADVGNVELEKEFTEDEVEAC
VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWRE
GVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSTS
EGQASLCKMGCVDHVFTVGRIIQGRKRAGKPTYCFFLDVKKAYDTVX

mRNA from alignment at Scaffold_417:339398..343521+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3475_4a-0001 ID=EsuBft3475_4a-0001|Name=EsuBft3475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4124bp|location=Sequence derived from alignment at Scaffold_417:339398..343521+ (Ectocarpus subulatus male Bft15b)
GTGATGTTGGATAGTGCCGGACACATAGACGCTTTGAGTGAGGAAAGACA
CATACTGGAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACACCCAG
ACGCGTTGAGTAAAGATACCTGCATACTGACACCTCAAAGATGGATTGGT
TGTTGAGTTTGCCAGACACAGTCTAGACTGAGTGAGGATAGCTGCATACT
GAAACCTCACGAGTTGAGTGATGTTGGTTGGATAGTGCCGGACACATAAA
CGCGCTGAGTGAGGAAAGACACATACTGAAACCTCACAGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGACGTTGGATAG
TGCCGGACACATAGACGCTTTGAGTGAGGATGGCTGCATATTGAGACCTA
ACGGGTTGAATGACGTTTGCGACTGCTGGACACATAGACGCATTGAGTGA
AGAAAGCTGCATACGGAAATCTCACAGGTTGATTTGTCTTGGACATTGCC
GGACACATAGAGGCGTTGAGTAAGGATAGCTGTATACTGAAAATCCACAG
TAGCTATAGTGAGGGGACAATTCGAGAATGCAGTACACACAGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCG
CAAGGAGTGAGCGCAAGCGGTTGAAAATAGTGGACCAAGTAGAACAAAGC
GATCTAGATATAGTGGGGATCTAAGAGACGTGGGAATTGAAGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGTCCCACCGTCGTCGAAGAAAGTCGCAAGCAAGGCG
CAGGAGAACTTTCGACAAAGTGGGGAAGATGTCCAGTGGTCCAGTAGGAA
GGGAGAAGTTGTCATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTT
CCAGTAGAGGACAGGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGAC
AACGGAGTGAGGATGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTT
GAACGGTAGGAGGGAATGCGATAAGCCGGAGTTCACCAGGCAACGGACAG
TTTGCAATGACTACTCAATCATCGACTACATCCTGGTAATAGGGGGAGCA
CACAGATCCCAGAGCTGCACGTAAGAGTGATAGATATAGGTTCGACCGAC
TACTTCCTCATATGGGCAAAAATCGACCGATCTAGAAAGATGGAGAGTAA
GAAACAGAGGAAAGTGTTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGTGGGA
AGGGATTAGTGGAATGGTAAAAAAGACCGCACAAGGGGGGGATACAGTGG
TGGCAACTTTGCGAAGTGTGCACGGTGGATTAGCCAGCAGTGGGAAGGGA
AAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCTCGGA
GAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGGCCC
AAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAACTAGAA
AAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTG
CCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTG
GGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGGTGTGG
AAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTT
GTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACAC
TGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATA
GTGGGAGTATTGGAGAAGGAACATAGCACTAGTGAGGGCCAGGCAAGTTT
GTGCAAGATGGGGTGCGTAGACCACGTATTTACGGTAGGGAGAATCATCC
AAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTG
AAAAAGGCATACGACACCGTNNNN

Coding sequence (CDS) from alignment at Scaffold_417:339398..343521+

>EsuBft3475_4a-0001 ID=EsuBft3475_4a-0001|Name=EsuBft3475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=891bp|location=Sequence derived from alignment at Scaffold_417:339398..343521+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGTTCACCAGGCAACGGACAGTTTGCAATGACTA
CTCAATCATCGACTACATCCTGGTAATAGGGGGAGCACACAGATCCCAGA
GCTGCACTGGGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGA
CTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGA
GGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTG
GGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGT
GTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAA
CGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGC
TATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAA
GGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAA
CTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGC
TGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCACTAGT
GAGGGCCAGGCAAGTTTGTGCAAGATGGGGTGCGTAGACCACGTATTTAC
GGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACT
GCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTNNNN