EsuBft3475_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3475_2a-0001
Unique Name	EsuBft3475_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:362381..363179 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_021678-tr
ProteomeId	EsuBft3475_2
Protein domains	SSF56672
Protein domains	G3DSA
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	799
Hectar predicted targeting category	other localisation
Evalue	2.41e-34
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3AH2J@33154\|Opisthokonta,3BX3Q@33208\|Metazoa
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_2a	EsuBft3475_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 362381..363179 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_2a-0001-exon	EsuBft3475_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 362381..363179 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_2a-0001-cds	EsuBft3475_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 362381..363076 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_2a-0001-exon	agat-three_prime_utr-13501	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 363077..363179 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3475_2a-0001	EsuBft3475_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 362381..363076 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:362381..363179+
coding sequence from alignment at Scaffold_417:362381..363179+

spliced messenger RNA

>EsuBft3475_2a-0001 ID=EsuBft3475_2a-0001|Name=EsuBft3475_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_417:362381..363179+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTGGCTAGTTCCCCAGGATGGTTCCAAGGCATTATGTCGCGTGT
GTGCGAAGGGCTTGAACGATGTATGCTGTTCATCGACGATATTGTTATTT
TCTCAAAGGGCGGGAAAGAACATGTTGTTGACATGACACATTTTTTCGAG
CGGGTAAAGCGATGTAACCTTAATCTCGCACCTAAGAAAACTTGCCTGGG
TGTTAAGGTCGTCAAGTTTCTAGGACACGAAGTCACTGTGAAGGGTCTAA
AACCGGACCCAGCTAAAGTGGCTAGTTTGCAACGAATTCCTATGCCAACG
AACGTTAGCCAGCTAAGGTCACTCTTGGTTGGGCTGAGCTACTATTATCG
AAGTTTCCTTCCAAATATGGCAGCTCAAACGCGTCCGTTAAACAATCTCT
TGAAGAAGGGTACCAAGTTTGTTTTTGGCACGGAACATGTGGAAATCGTA
CAACGGTTGATGGATAAACTGTCTAGCCCGAACGTGTTAGCCTATCGAGA
TGCGATATCGGGGGTCAGAAAATTTCGTGTTATCACGGATGCGTCCCAGG
ATGGATTGGGTGCAGTAATAGAACAGGACCAACCTGATGGCACGACCAGA
CCTTTGTGTTTCTTGAGAACAGTAGATCTACTCTTCCTAACGAGAAGCAG
TGGACACCAACGGAATTTGAATGTGGTGCTTTGGTCTGGGCGATAGAAAA
GAACCGTCAATATTTCTATGGTATACCTTGCGAGGTGGTCACCGATCATC
AGCCATTCATTGTTAAACCTGGAGAGTTTGTCCTCTAAGGTTAGTCGTG

protein sequence of EsuBft3475_2a-0001

>EsuBft3475_2 ID=EsuBft3475_2|Name=EsuBft3475_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MGLASSPGWFQGIMSRVCEGLERCMLFIDDIVIFSKGGKEHVVDMTHFFE
RVKRCNLNLAPKKTCLGVKVVKFLGHEVTVKGLKPDPAKVASLQRIPMPT
NVSQLRSLLVGLSYYYRSFLPNMAAQTRPLNNLLKKGTKFVFGTEHVEIV
QRLMDKLSSPNVLAYRDAISGVRKFRVITDASQDGLGAVIEQDQPDGTTR
PLCFLRTVDLLFLTRSSGHQRNLNVVLWSGR

mRNA from alignment at Scaffold_417:362381..363179+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3475_2a-0001 ID=EsuBft3475_2a-0001|Name=EsuBft3475_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_417:362381..363179+ (Ectocarpus subulatus male Bft15b)
ATGGGATTGGCTAGTTCCCCAGGATGGTTCCAAGGCATTATGTCGCGTGT
GTGCGAAGGGCTTGAACGATGTATGCTGTTCATCGACGATATTGTTATTT
TCTCAAAGGGCGGGAAAGAACATGTTGTTGACATGACACATTTTTTCGAG
CGGGTAAAGCGATGTAACCTTAATCTCGCACCTAAGAAAACTTGCCTGGG
TGTTAAGGTCGTCAAGTTTCTAGGACACGAAGTCACTGTGAAGGGTCTAA
AACCGGACCCAGCTAAAGTGGCTAGTTTGCAACGAATTCCTATGCCAACG
AACGTTAGCCAGCTAAGGTCACTCTTGGTTGGGCTGAGCTACTATTATCG
AAGTTTCCTTCCAAATATGGCAGCTCAAACGCGTCCGTTAAACAATCTCT
TGAAGAAGGGTACCAAGTTTGTTTTTGGCACGGAACATGTGGAAATCGTA
CAACGGTTGATGGATAAACTGTCTAGCCCGAACGTGTTAGCCTATCGAGA
TGCGATATCGGGGGTCAGAAAATTTCGTGTTATCACGGATGCGTCCCAGG
ATGGATTGGGTGCAGTAATAGAACAGGACCAACCTGATGGCACGACCAGA
CCTTTGTGTTTCTTGAGAACAGTAGATCTACTCTTCCTAACGAGAAGCAG
TGGACACCAACGGAATTTGAATGTGGTGCTTTGGTCTGGGCGATAGAAAA
GAACCGTCAATATTTCTATGGTATACCTTGCGAGGTGGTCACCGATCATC
AGCCATTCATTGTTAAACCTGGAGAGTTTGTCCTCTAAGGTTAGTCGTG

Coding sequence (CDS) from alignment at Scaffold_417:362381..363179+

>EsuBft3475_2a-0001 ID=EsuBft3475_2a-0001|Name=EsuBft3475_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_417:362381..363179+ (Ectocarpus subulatus male Bft15b)
ATGGGATTGGCTAGTTCCCCAGGATGGTTCCAAGGCATTATGTCGCGTGT
GTGCGAAGGGCTTGAACGATGTATGCTGTTCATCGACGATATTGTTATTT
TCTCAAAGGGCGGGAAAGAACATGTTGTTGACATGACACATTTTTTCGAG
CGGGTAAAGCGATGTAACCTTAATCTCGCACCTAAGAAAACTTGCCTGGG
TGTTAAGGTCGTCAAGTTTCTAGGACACGAAGTCACTGTGAAGGGTCTAA
AACCGGACCCAGCTAAAGTGGCTAGTTTGCAACGAATTCCTATGCCAACG
AACGTTAGCCAGCTAAGGTCACTCTTGGTTGGGCTGAGCTACTATTATCG
AAGTTTCCTTCCAAATATGGCAGCTCAAACGCGTCCGTTAAACAATCTCT
TGAAGAAGGGTACCAAGTTTGTTTTTGGCACGGAACATGTGGAAATCGTA
CAACGGTTGATGGATAAACTGTCTAGCCCGAACGTGTTAGCCTATCGAGA
TGCGATATCGGGGGTCAGAAAATTTCGTGTTATCACGGATGCGTCCCAGG
ATGGATTGGGTGCAGTAATAGAACAGGACCAACCTGATGGCACGACCAGA
CCTTTGTGTTTCTTGAGAACAGTAGATCTACTCTTCCTAACGAGAAGCAG
TGGACACCAACGGAATTTGAATGTGGTGCTTTGGTCTGGGCGATAG