EsuBft3460_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3460_2a-0001
Unique NameEsuBft3460_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:4969..6080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3460_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length46
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2aEsuBft3460_2aEctocarpus subulatus male Bft15bgeneScaffold_501 4969..6080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2a-0001-exonEsuBft3460_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 4969..5042 +
EsuBft3460_2a-0001-exonagat-exon-27334Ectocarpus subulatus male Bft15bexonScaffold_501 5691..6080 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2a-0001-exonagat-five_prime_utr-8533Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_501 4969..4997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2a-0001-cdsEsuBft3460_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 4998..5042 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2a-0001-exonagat-three_prime_utr-13468Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 5709..6080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3460_2a-0001EsuBft3460_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 4998..5708 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3460_2a-0001 ID=EsuBft3460_2a-0001|Name=EsuBft3460_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=464bp|location=Sequence derived from alignment at Scaffold_501:4969..6080+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCATTTGTGGTACTCGTATTGAGAGGCATGGAGAGCAATGTTTGTAGT
CTACAGCACGTCATCCAGCAGCAGATTTTTTCTCAAGAATAGTAGTCGGT
TTTACGAGAGTAATAATCAGTGATATTGCGTATGTTTCTGTAGAAAACGC
CCACATGCGCCCGTGTCTGGTGTGTTGTCGTGAGCATCGAACGCGGTGCC
TAGCGGTTTGATGTTCGTGTTTTTTGTCCGCACATCAATGGAACTGCCGC
ACTACATTTAATTTCGAAATGTCACGTGCCCCGATCACCATACATGTACT
ATGCGGACAACAGCAGTGTTGAACAAGTGCTCAATCGCGTTAAGTGCTGC
CCTTGGCGGCAACTCGCTGGCGTTTCCCCCCTCCCCCTTCAAAAAAGCAA
CATAACACCACGGGTGGGAACAGCTTTAGAGATAGGTGGCCCCAGGGCGT
CCAACATGTTGCGA
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protein sequence of EsuBft3460_2a-0001

>EsuBft3460_2 ID=EsuBft3460_2|Name=EsuBft3460_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=20bp
MESNVCSLQHVIQQQIFSQE
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mRNA from alignment at Scaffold_501:4969..6080+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3460_2a-0001 ID=EsuBft3460_2a-0001|Name=EsuBft3460_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1112bp|location=Sequence derived from alignment at Scaffold_501:4969..6080+ (Ectocarpus subulatus male Bft15b)
TGTCATTTGTGGTACTCGTATTGAGAGGCATGGAGAGCAATGTTTGTAGT
CTACAGCACGTCATCCAGCAGCAGGTATATTTCGGATAGATCATTGCACA
TGTTTGATTTGCTGCTTCTGCTGTTCGACTGCTGTTCGACTTGCCTACCC
CATGTTACTGTAACGCAAGCGCGGTCCTCTTCACCGACGACGAAAAATTG
TGGAAGCGGTTCGACAAAATCCTGCGCGAAATCAAGAAATACTACAACCC
CGTGTGGGACAGGTGTGTCTGCCTGTGATCTTGTTTGTGTACGTGCTTGG
AGCGGCATCAGTACCGATGCCGCGCTGCATTTTTTTTTGTTGCGTTCCGT
GTAGGGTATTTTCCTGTTCTCTTGTGGCGTGCCCTGCTGTGAACGAGCAG
TCGACTGCAACCACGCCCTCCCGAGAAAAATATGGTTGGCGTCGGCGGCN
CGATGCCGCGCTGCATTTTTTTTTGTTGCGTTCCGTGTAGGGTATTTTCC
TGTTCTCTTGTGGCGTGCCCTGCTGTGAACGAGCAGTCGACTGCAACCAC
GCCCTCCCGAGAAAAATATGGTTGGCGTCGGCGGCGTAACTACTACCGTG
TGTACAGTGGTGAGTAGTGCACGTACCTTTCGCCACAGAAGCCACCGACG
AACAACTCCCGTAGGCAATACTAAATGAAGAAGCGAGGCCGAACACGAAG
CAACACGGAGGATATTGAACAGATTTTTTCTCAAGAATAGTAGTCGGTTT
TACGAGAGTAATAATCAGTGATATTGCGTATGTTTCTGTAGAAAACGCCC
ACATGCGCCCGTGTCTGGTGTGTTGTCGTGAGCATCGAACGCGGTGCCTA
GCGGTTTGATGTTCGTGTTTTTTGTCCGCACATCAATGGAACTGCCGCAC
TACATTTAATTTCGAAATGTCACGTGCCCCGATCACCATACATGTACTAT
GCGGACAACAGCAGTGTTGAACAAGTGCTCAATCGCGTTAAGTGCTGCCC
TTGGCGGCAACTCGCTGGCGTTTCCCCCCTCCCCCTTCAAAAAAGCAACA
TAACACCACGGGTGGGAACAGCTTTAGAGATAGGTGGCCCCAGGGCGTCC
AACATGTTGCGA
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Coding sequence (CDS) from alignment at Scaffold_501:4969..6080+

>EsuBft3460_2a-0001 ID=EsuBft3460_2a-0001|Name=EsuBft3460_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=63bp|location=Sequence derived from alignment at Scaffold_501:4969..6080+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGCAATGTTTGTAGTCTACAGCACGTCATCCAGCAGCAGATTTT
TTCTCAAGAATAG
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