EsuBft344_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft344_8a-0001
Unique Name	EsuBft344_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:156597..160044 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft344_8
Protein domains	IPR000270
Protein domains	G3DSA
Protein domains	SSF54277
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	237
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft344_8a	EsuBft344_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 156597..160044 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_8a-0001-exon	agat-exon-64960	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 156597..158599 -
EsuBft344_8a-0001-exon	EsuBft344_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 159676..160044 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_8a-0001-exon	agat-three_prime_utr-13428	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 156597..157657 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_8a-0001-cds	EsuBft344_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 157658..158599 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_8a-0001	EsuBft344_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 157658..160044 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:156597..160044-
coding sequence from alignment at Scaffold_340:156597..160044-

spliced messenger RNA

>EsuBft344_8a-0001 ID=EsuBft344_8a-0001|Name=EsuBft344_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2372bp|location=Sequence derived from alignment at Scaffold_340:156597..160044- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCTTCCCCCACACAACTTACATCCAAGAACACCATCAAATACAA
CCGCAACAACCGCTACAACAACGACAAGACGATGACTACCTCTTCCATCA
AGATCAACTTCCAGGGCGCTTCACGCGACGTGAGCGTTCCGGCTCCGGCT
ACGCTCGCCAGGCTCCAAGCGGCCATCGCAGCGGTCTTCGAGGTAGAGCT
GCCTGTCCGCTCCCTCACTGGCGAGGCCGCCAAGGACACCGACCTGTCCT
TCACGTACAAGGATCCTGATGGGGACGACATCGTGTTCGACAAGGATTCC
GAGCTGAACCTGGCCCTACGCCTGTGCCCGGGCTCGCTCGAGATCTCGGC
TGCTGGCAAGGAAAACAAGGCTACGAAGATGCCGGACTCCGAAGAAACGC
TGTACAAGATTGCCGCCCGTAACCTACGCGAGTACAACGGCGTGCCCTCG
ATGACCCCACCCAAGCTCGTCAAGACCTTGGCTTTCCTCAAGCTGAACCC
GCAACGCCTCGTGAAGCAAGGCCTTGCTCCCAAGATGCTTCTGGCTCGCA
TGAAGGCCGAAACCGCCAACAACGCCAAGCTATCGAAGGTTCGTCTTGGT
GACGGCAAGAACAACGAAGATCTCGCCGAATGGGTCGCCGCCGGCATGGA
ATTTATGAGCGTGGAGGACGACAAGAAGGAGTGGAACGACGGCTTCGTGT
CCGTCGAGCCCGCAGAGACTTCCTCCTCCGACAACGGCAACGAGGAAGAG
AACGACGACGCTGCGCCTGAGGTCAAACAGAACCTCATCCACAAGGCATT
CATCGCCGGCGGCATCCAGCTCCGCCCCCGCGAGGTGCGGCCCCTGCTCG
TCGCCCTGGACGTCCGCCCCTGGCGGCTGGCCAAGCTCGGCCTCGTCGAC
GGCAAGGATCTCCGCGCCATGCTCCAAGCCGAGAAGAAGGCCGCCCACAA
GCGTCACGGCCCGGGCCACGGTGGTCCCCGTGGCCCCACCGGCGGCTTCG
CCCGTGGTCCCGCTGGCCTTATCATGCACGTCTGCGGTGGTAACCCAGGT
CTCGGTGCCGGTGGTCGTGCCGGTCCCGGTGCCGGTCCTGGTGGTTGTGC
CCCGGAGGCGCGAGGCAACGTGGTTCCTCTCGGGTGGGGCAAGATGAGGG
CCGTAGGCTGCGGCAAGCCCCGCGTAGGAATGATGATGCCCCGCCGCTGC
CACCCCCACGCCGGCATGCCCCCCCCTCCCCCAGCTCACATGGAGCACGC
GCGTGCGCCCGGCGGCGGCGGCGGCGGTGTTGGCCAGCAGCAGCACGAGC
GTCACCGCTAGGGGGCGAAGATCTTCATCACCACGAAGCCGAAGGAGGAG
GAACCTAGCCGTCTACTACCTTTCTGGTCTTGGTGTCGCTTTTCGTGGCG
CAAGATTGAATAACGGCATGAGAGTAGTCGAGGTGGAACAGCCTTGTCTT
TCGGTATTATTTGCAATTGGGCAGAAGCCTCCCTCGGAAACACTGATACG
AGGGGTGGAGAACGGAAGGATTGAGTAGACGAGAACCGTTTCACCGTTTG
GCTTCTGCACTCATGCAGCACTACGATAGGCGACAACGCTCGCTCGATTC
GCCCTTCGGAAGATGTTTTTTGTTGGCGTTTTGACGTTCGTTCGTAGTTT
TGTACTTGGTAGTGATTTTGCTTGTGGTGATAAAATAAGCTGATCACGGA
AGCATGAATACTTTCGCTTTCGAATGTGACGTGAAGTGCTACAACGAGTG
CGGCGCGAAATGGGCTCGGCGAGCTGAGTCAGCGCCGGTAGCTTGTTTGA
GTTTTACCGTCTTGCCGGACAGAGGCGCGATGCTTCAAGCTTGTATTATG
ACTATTTGATGTCCGTAAGCCATCCGAATTGAGAGATTGGTCCATGGCCT
ACAGCGAAGTTCTTCGAAGTAGTGGAGAGAGCAGGGGGGTTATCTTGTAA
AACAGTCGAGGGGTGATGACGGTGTGTGTCCTGTCGTGGGCTGTTGTATT
GATGGGTATTTGCTTTCCCAACCGAGCTTTCATGGACGGGCGCTTACGCA
ACCAGGAGTGTAGTAGCCCCAGGCTGGTGTGTGCGCACAGAGGGAGCAAC
ATGTTGGCGCAAATTGTATGGATCTAAAAATTCGACCGTCGAGGTCGCAA
ACAATATTTGTCTGAGAAGCGGTCGCAGTAGTTGGACCGCCAGACACCGT
AAAGGTGCGCGCTCGATTGCGTGCTCTGCCAGGTTCAAAGGGCTGCTATT
GCCCAAAAAAGGTCGATTGCGTTTTTCTCGTCGACGGCAATCTTACGCGC
GTCGGTCGGGTTCGCACCCTTGAGTCTTGTGGAGGAGACAACCTTGCAGT
CAACAAGTGTCTTTCCGAAAAA

protein sequence of EsuBft344_8a-0001

>EsuBft344_8 ID=EsuBft344_8|Name=EsuBft344_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=436bp
MCPSPTQLTSKNTIKYNRNNRYNNDKTMTTSSIKINFQGASRDVSVPAPA
TLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDS
ELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPS
MTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLG
DGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEE
NDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVD
GKDLRAMLQAEKKAAHKRHGPGHGGPRGPTGGFARGPAGLIMHVCGGNPG
LGAGGRAGPGAGPGGCAPEARGNVVPLGWGKMRAVGCGKPRVGMMMPRRC
HPHAGMPPPPPAHMEHARAPGGGGGGVGQQQHERHR

mRNA from alignment at Scaffold_340:156597..160044-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft344_8a-0001 ID=EsuBft344_8a-0001|Name=EsuBft344_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3448bp|location=Sequence derived from alignment at Scaffold_340:156597..160044- (Ectocarpus subulatus male Bft15b)
ATGTGCCCTTCCCCCACACAACTTACATCCAAGAACACCATCAAATACAA
CCGCAACAACCGCTACAACAACGACAAGACGATGACTACCTCTTCCATCA
AGATCAACTTCCAGGGCGCTTCACGCGACGTGAGCGTTCCGGCTCCGGCT
ACGCTCGCCAGGCTCCAAGCGGCCATCGCAGCGGTCTTCGAGGTAGAGCT
GCCTGTCCGCTCCCTCACTGGCGAGGCCGCCAAGGACACCGACCTGTCCT
TCACGTACAAGGATCCTGATGGGGACGACATCGTGTTCGACAAGGATTCC
GAGCTGAACCTGGCCCTACGCCTGTGCCCGGGCTCGCTCGAGATCTCGGC
TGCTGGCAAGGAAAACAAGGTGAGAGTCAAGCATATCGACAGCGGGTTTT
GCGCGGCGGACACACGTGCAGGTCACTACTGCTGTAGCTTTGACGAGGTA
GCACAGCAGTAGCACATGGTAGCAGCTATTGTTGTAGCTGCGCTACTCTC
CTCCCGTGTTCGCAGTCCCCGTGCGTGCTACTTCGCAGTACTTGTCGAAG
TTCTTCAACTCGCGTTTTCTCTCCGTCTTTTCGCTTTGCAGACACGCAGC
CCCTTTCGTGTGCTTGACTGCCTGTAGACGGTCACATCTACTCACAGCAA
CACTTGCAAGAATCTGCTGTCGTTGCAGTTTTCTCTCCAATTAACTTGAT
GATGTACATAAACGAGTCTCGGGAAATGTGGCACCACCTTGCCTTGTTTG
GATTGGCACATCTGTCGGTGGTCTGATCAGTATGATCGGCTCCTCTTGAA
AGAAGGTGCTGTGTTTCCTCTCGGACCGATCTCTCGGAGCTACTAGTCTC
GATTTTCGTCGGTGGCGGTTACTTCTCGATGCATCTCCATACCTCCGACG
TCCAGAAGCTGCTGCCAATGGACTACTGCATCGTGCATCCCAACAAACCA
ACTTGAACAAGCTCTGTTCTCGTCCTTAACCCACCCCCCCCCCCCCCCTG
GTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCACCGACGTTTTAAA
ACAAGCCAATTAACTTTGTGAACTCGGCAACCAGGTTACCGTTTTTTTTT
TTTACCTCCGGTTTTTTTTTTGGCGGTAACAAAAATGGTGGCCGAGTAGA
TCATGTTGTGCGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCCCCCCCTCCCCTCTCCTCTCCGCTCTTCGTTTCAGGCTAC
GAAGATGCCGGACTCCGAAGAAACGCTGTACAAGATTGCCGCCCGTAACC
TACGCGAGTACAACGGCGTGCCCTCGATGACCCCACCCAAGCTCGTCAAG
ACCTTGGCTTTCCTCAAGCTGAACCCGCAACGCCTCGTGAAGCAAGGCCT
TGCTCCCAAGATGCTTCTGGCTCGCATGAAGGCCGAAACCGCCAACAACG
CCAAGCTATCGAAGGTTCGTCTTGGTGACGGCAAGAACAACGAAGATCTC
GCCGAATGGGTCGCCGCCGGCATGGAATTTATGAGCGTGGAGGACGACAA
GAAGGAGTGGAACGACGGCTTCGTGTCCGTCGAGCCCGCAGAGACTTCCT
CCTCCGACAACGGCAACGAGGAAGAGAACGACGACGCTGCGCCTGAGGTC
AAACAGAACCTCATCCACAAGGCATTCATCGCCGGCGGCATCCAGCTCCG
CCCCCGCGAGGTGCGGCCCCTGCTCGTCGCCCTGGACGTCCGCCCCTGGC
GGCTGGCCAAGCTCGGCCTCGTCGACGGCAAGGATCTCCGCGCCATGCTC
CAAGCCGAGAAGAAGGCCGCCCACAAGCGTCACGGCCCGGGCCACGGTGG
TCCCCGTGGCCCCACCGGCGGCTTCGCCCGTGGTCCCGCTGGCCTTATCA
TGCACGTCTGCGGTGGTAACCCAGGTCTCGGTGCCGGTGGTCGTGCCGGT
CCCGGTGCCGGTCCTGGTGGTTGTGCCCCGGAGGCGCGAGGCAACGTGGT
TCCTCTCGGGTGGGGCAAGATGAGGGCCGTAGGCTGCGGCAAGCCCCGCG
TAGGAATGATGATGCCCCGCCGCTGCCACCCCCACGCCGGCATGCCCCCC
CCTCCCCCAGCTCACATGGAGCACGCGCGTGCGCCCGGCGGCGGCGGCGG
CGGTGTTGGCCAGCAGCAGCACGAGCGTCACCGCTAGGGGGCGAAGATCT
TCATCACCACGAAGCCGAAGGAGGAGGAACCTAGCCGTCTACTACCTTTC
TGGTCTTGGTGTCGCTTTTCGTGGCGCAAGATTGAATAACGGCATGAGAG
TAGTCGAGGTGGAACAGCCTTGTCTTTCGGTATTATTTGCAATTGGGCAG
AAGCCTCCCTCGGAAACACTGATACGAGGGGTGGAGAACGGAAGGATTGA
GTAGACGAGAACCGTTTCACCGTTTGGCTTCTGCACTCATGCAGCACTAC
GATAGGCGACAACGCTCGCTCGATTCGCCCTTCGGAAGATGTTTTTTGTT
GGCGTTTTGACGTTCGTTCGTAGTTTTGTACTTGGTAGTGATTTTGCTTG
TGGTGATAAAATAAGCTGATCACGGAAGCATGAATACTTTCGCTTTCGAA
TGTGACGTGAAGTGCTACAACGAGTGCGGCGCGAAATGGGCTCGGCGAGC
TGAGTCAGCGCCGGTAGCTTGTTTGAGTTTTACCGTCTTGCCGGACAGAG
GCGCGATGCTTCAAGCTTGTATTATGACTATTTGATGTCCGTAAGCCATC
CGAATTGAGAGATTGGTCCATGGCCTACAGCGAAGTTCTTCGAAGTAGTG
GAGAGAGCAGGGGGGTTATCTTGTAAAACAGTCGAGGGGTGATGACGGTG
TGTGTCCTGTCGTGGGCTGTTGTATTGATGGGTATTTGCTTTCCCAACCG
AGCTTTCATGGACGGGCGCTTACGCAACCAGGAGTGTAGTAGCCCCAGGC
TGGTGTGTGCGCACAGAGGGAGCAACATGTTGGCGCAAATTGTATGGATC
TAAAAATTCGACCGTCGAGGTCGCAAACAATATTTGTCTGAGAAGCGGTC
GCAGTAGTTGGACCGCCAGACACCGTAAAGGTGCGCGCTCGATTGCGTGC
TCTGCCAGGTTCAAAGGGCTGCTATTGCCCAAAAAAGGTCGATTGCGTTT
TTCTCGTCGACGGCAATCTTACGCGCGTCGGTCGGGTTCGCACCCTTGAG
TCTTGTGGAGGAGACAACCTTGCAGTCAACAAGTGTCTTTCCGAAAAA

Coding sequence (CDS) from alignment at Scaffold_340:156597..160044-

>EsuBft344_8a-0001 ID=EsuBft344_8a-0001|Name=EsuBft344_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1311bp|location=Sequence derived from alignment at Scaffold_340:156597..160044- (Ectocarpus subulatus male Bft15b)
ATGTGCCCTTCCCCCACACAACTTACATCCAAGAACACCATCAAATACAA
CCGCAACAACCGCTACAACAACGACAAGACGATGACTACCTCTTCCATCA
AGATCAACTTCCAGGGCGCTTCACGCGACGTGAGCGTTCCGGCTCCGGCT
ACGCTCGCCAGGCTCCAAGCGGCCATCGCAGCGGTCTTCGAGGTAGAGCT
GCCTGTCCGCTCCCTCACTGGCGAGGCCGCCAAGGACACCGACCTGTCCT
TCACGTACAAGGATCCTGATGGGGACGACATCGTGTTCGACAAGGATTCC
GAGCTGAACCTGGCCCTACGCCTGTGCCCGGGCTCGCTCGAGATCTCGGC
TGCTGGCAAGGAAAACAAGGCTACGAAGATGCCGGACTCCGAAGAAACGC
TGTACAAGATTGCCGCCCGTAACCTACGCGAGTACAACGGCGTGCCCTCG
ATGACCCCACCCAAGCTCGTCAAGACCTTGGCTTTCCTCAAGCTGAACCC
GCAACGCCTCGTGAAGCAAGGCCTTGCTCCCAAGATGCTTCTGGCTCGCA
TGAAGGCCGAAACCGCCAACAACGCCAAGCTATCGAAGGTTCGTCTTGGT
GACGGCAAGAACAACGAAGATCTCGCCGAATGGGTCGCCGCCGGCATGGA
ATTTATGAGCGTGGAGGACGACAAGAAGGAGTGGAACGACGGCTTCGTGT
CCGTCGAGCCCGCAGAGACTTCCTCCTCCGACAACGGCAACGAGGAAGAG
AACGACGACGCTGCGCCTGAGGTCAAACAGAACCTCATCCACAAGGCATT
CATCGCCGGCGGCATCCAGCTCCGCCCCCGCGAGGTGCGGCCCCTGCTCG
TCGCCCTGGACGTCCGCCCCTGGCGGCTGGCCAAGCTCGGCCTCGTCGAC
GGCAAGGATCTCCGCGCCATGCTCCAAGCCGAGAAGAAGGCCGCCCACAA
GCGTCACGGCCCGGGCCACGGTGGTCCCCGTGGCCCCACCGGCGGCTTCG
CCCGTGGTCCCGCTGGCCTTATCATGCACGTCTGCGGTGGTAACCCAGGT
CTCGGTGCCGGTGGTCGTGCCGGTCCCGGTGCCGGTCCTGGTGGTTGTGC
CCCGGAGGCGCGAGGCAACGTGGTTCCTCTCGGGTGGGGCAAGATGAGGG
CCGTAGGCTGCGGCAAGCCCCGCGTAGGAATGATGATGCCCCGCCGCTGC
CACCCCCACGCCGGCATGCCCCCCCCTCCCCCAGCTCACATGGAGCACGC
GCGTGCGCCCGGCGGCGGCGGCGGCGGTGTTGGCCAGCAGCAGCACGAGC
GTCACCGCTAG