EsuBft344_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft344_7a-0001
Unique NameEsuBft344_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:177112..178257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft344_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length80
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7aEsuBft344_7aEctocarpus subulatus male Bft15bgeneScaffold_340 177112..178257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7a-0001EsuBft344_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 177482..177643 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7a-0001-exonagat-exon-64959Ectocarpus subulatus male Bft15bexonScaffold_340 177112..177797 +
EsuBft344_7a-0001-exonEsuBft344_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 178139..178257 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7a-0001-exonagat-five_prime_utr-8516Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 177112..177481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7a-0001-cdsEsuBft344_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 177482..177643 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_7a-0001-exonagat-three_prime_utr-13426Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 177644..177797 +
EsuBft344_7a-0001-exonagat-three_prime_utr-13427Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 178139..178257 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft344_7a-0001 ID=EsuBft344_7a-0001|Name=EsuBft344_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=805bp|location=Sequence derived from alignment at Scaffold_340:177112..178257+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTTTGTGCGCCTTCGTTTCGAGAGATGGTGGCGCTTCGCGAACTTCCT
GCACCACCGGTCCGTCGCTGAAAAGCTCTTTGCACGCGGGTCGTCCGGAT
ACATTTCCACCACGAGCTTCTCGCGTTGACTCGAATCCAGGCTGTCGACA
CTCCGAGTGTGCTCTTGCGCCGTTGCAGCAACAGCGAGTGCAGCTTCTTC
GCTGCGTCTCCGAATCACCTCCTCTCCCTGCCAGTCTTGAAAAGGTCTTT
CTTCAAGTCATTGACCGCGGCTGCGATCAGCTTCTCTGCGTCATCGTTCC
ACTTGCAGATGTTGGGTTGGGGAATGCCAGTCTTTCTTGCCAGGAACTGC
TGGCACGACACGCCGTGAACATGCCAGATCTTTTCGGCGTGATCGGCCTC
CAGCTCTCGCAGCTCCACGACCACCGCAGCCTTCTTCCTGTTGCTGTACT
GCGTATTCTTCTCAGCCCCTCGTGTTTTCTTCCGCTTGGTGCGTTCTTCG
TCCGACAAAAGGCCGTCATCTGGCAAGTCTGATGTACCATCGCCTTTGGT
CCTTGGCTGCAGCTCAAACGAACAGCTCCCTCGCACGTTGTACATTTTCT
GGCCCGCCGCAGTGTTGTGCCCGCCTCCCTCTGAGTGGTGAAAGGCGACA
CTAAAACACCTGCCCGAATACCCGTTTCAAGGTTGAAGTCGTCATGGTCC
CACCCGTCGCGAGGGCGCGCCTGAGCCCTCGTCGAAGATGCCGAAGAGGA
GCTGGGTGCACGGCACTACAGTGTAGCGATCGACCTTATTCGGAGGCAAA
GGTCT
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protein sequence of EsuBft344_7a-0001

>EsuBft344_7 ID=EsuBft344_7|Name=EsuBft344_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MPDLFGVIGLQLSQLHDHRSLLPVAVLRILLSPSCFLPLGAFFVRQKAVI
WQV
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mRNA from alignment at Scaffold_340:177112..178257+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft344_7a-0001 ID=EsuBft344_7a-0001|Name=EsuBft344_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_340:177112..178257+ (Ectocarpus subulatus male Bft15b)
GTGTTTGTGCGCCTTCGTTTCGAGAGATGGTGGCGCTTCGCGAACTTCCT
GCACCACCGGTCCGTCGCTGAAAAGCTCTTTGCACGCGGGTCGTCCGGAT
ACATTTCCACCACGAGCTTCTCGCGTTGACTCGAATCCAGGCTGTCGACA
CTCCGAGTGTGCTCTTGCGCCGTTGCAGCAACAGCGAGTGCAGCTTCTTC
GCTGCGTCTCCGAATCACCTCCTCTCCCTGCCAGTCTTGAAAAGGTCTTT
CTTCAAGTCATTGACCGCGGCTGCGATCAGCTTCTCTGCGTCATCGTTCC
ACTTGCAGATGTTGGGTTGGGGAATGCCAGTCTTTCTTGCCAGGAACTGC
TGGCACGACACGCCGTGAACATGCCAGATCTTTTCGGCGTGATCGGCCTC
CAGCTCTCGCAGCTCCACGACCACCGCAGCCTTCTTCCTGTTGCTGTACT
GCGTATTCTTCTCAGCCCCTCGTGTTTTCTTCCGCTTGGTGCGTTCTTCG
TCCGACAAAAGGCCGTCATCTGGCAAGTCTGATGTACCATCGCCTTTGGT
CCTTGGCTGCAGCTCAAACGAACAGCTCCCTCGCACGTTGTACATTTTCT
GGCCCGCCGCAGTGTTGTGCCCGCCTCCCTCTGAGTGGTGAAAGGCGACA
CTAAAACACCTGCCCGAATACCCGTTTCAAGGTTGAGTCTATTCGATATA
CTCGTAGCATAGCATGCGGGTGGTATATTGCGTATACATATCGGTATTGC
AGTGACGAACTACGGAGGAACAAGAAGTTTCTTTATGTTTTCCTTGGGAG
TGTGGTTGGTGTAGATTCATGAAGATTCGTTTTGGGTGTTTGAGCGTTAT
GCGTGACTTGATGCCGTGATGGAATGACGAGCTCAAGCACGCCCCCGATT
ATTACAACATGTATACAACACGTTTTCCAGCACGTCTGCACGACGTTACC
TACCCCTACGGCCCGTCATGGCCGAGCTGCTCTACACTCCAATCACACAC
AACTGAGCCACCCGAATTATCGATCAGAGTCGTCATGGTCCCACCCGTCG
CGAGGGCGCGCCTGAGCCCTCGTCGAAGATGCCGAAGAGGAGCTGGGTGC
ACGGCACTACAGTGTAGCGATCGACCTTATTCGGAGGCAAAGGTCT
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Coding sequence (CDS) from alignment at Scaffold_340:177112..178257+

>EsuBft344_7a-0001 ID=EsuBft344_7a-0001|Name=EsuBft344_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_340:177112..178257+ (Ectocarpus subulatus male Bft15b)
ATGCCAGATCTTTTCGGCGTGATCGGCCTCCAGCTCTCGCAGCTCCACGA
CCACCGCAGCCTTCTTCCTGTTGCTGTACTGCGTATTCTTCTCAGCCCCT
CGTGTTTTCTTCCGCTTGGTGCGTTCTTCGTCCGACAAAAGGCCGTCATC
TGGCAAGTCTGA
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