EsuBft344_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft344_6a-0001
Unique Name	EsuBft344_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:179257..180667 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft344_6
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	89
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft344_6a	EsuBft344_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 179257..180667 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_6a-0001-exon	agat-exon-64958	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 179257..180045 -
EsuBft344_6a-0001-exon	EsuBft344_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 180560..180667 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_6a-0001-cds	EsuBft344_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 179257..180045 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft344_6a-0001	EsuBft344_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 179257..180667 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:179257..180667-
coding sequence from alignment at Scaffold_340:179257..180667-

spliced messenger RNA

>EsuBft344_6a-0001 ID=EsuBft344_6a-0001|Name=EsuBft344_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=897bp|location=Sequence derived from alignment at Scaffold_340:179257..180667- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCAGCGTCCTGCGAGGAAAGGCGTTGTTCGCGTTCCTCCTGGA
GTCCAAGTCATTCTCCGCATACGTCGCCGACCCGGGCAAACAACGGGGCG
ACACCGAGGCGCTGCCATCCAGCCCCCCGCATGGCAGCACTCACGAAGGA
CGGAATCCTGAAGGGGGAAGGAGTCAAGGCCGAAGCCTTGTCGCCCTGGA
CTTCCGCCCCTGGCGGCTGGCCAAGCTCGGCCTCGGCAACGATCTCCGCG
CCATGCTCCAAGCCGAGAAGAAGGCCGCCCACAAGCGCCACGGCCCGGGC
CACGCCGGCCTCCACCACCACGGCCACCTTGAGCGCATGGCCCACTGTGA
CCCCCGAGGCCCCACCGGCGGCTTTGCCCGTGGTCCCACCGGCCTCAATA
TGCGCCGCCACCGCTCACAAGAAAACTCGTGTTCTTCAGGCACAAGGAAG
GCGATGCCACTTTCAGACGCATCCATCGGCAACCTCGAGAGGTTGTCGAA
GTTTGTTGATGCCGGCTACATCAAGGAGCACATCATGGCCAACAAGCCCA
TCGATGACAAGTTCGAGTCGCATATGGAGCGCATGGCCAACTTGCTGTCC
AGCGGCATGTTTACGGCGAAAGACTACCGAGAGCAGCTAGATGCAAAAGT
TGCAGACCTTTTGCGAGACGGAGCACCACGGTCGGCAGCGGCGGACGGAG
AAGCAGGGGTTGGTGGGTCGCAGGTGGGGGAGACTCCTAGGGCCGCACAG
AAAAAGGGCAAGCGCACGGCCAAGGAAGCGAGGGCCGCGGCGAACACGAT
GCACGGGAACATCGTCAACTGCTGGGCCGCAGCAACAAACAAGCCGGTGA
GTTGGTTGGAGATTCCGTTTGCATGCTTTGGCTATGTTCGTGAATGA

protein sequence of EsuBft344_6a-0001

>EsuBft344_6 ID=EsuBft344_6|Name=EsuBft344_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MASSVLRGKALFAFLLESKSFSAYVADPGKQRGDTEALPSSPPHGSTHEG
RNPEGGRSQGRSLVALDFRPWRLAKLGLGNDLRAMLQAEKKAAHKRHGPG
HAGLHHHGHLERMAHCDPRGPTGGFARGPTGLNMRRHRSQENSCSSGTRK
AMPLSDASIGNLERLSKFVDAGYIKEHIMANKPIDDKFESHMERMANLLS
SGMFTAKDYREQLDAKVADLLRDGAPRSAAADGEAGVGGSQVGETPRAAQ
KKGKRTAKEARAAANTMHGNIVNCWAAATNKPVSWLEIPFACFGYVRE

mRNA from alignment at Scaffold_340:179257..180667-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft344_6a-0001 ID=EsuBft344_6a-0001|Name=EsuBft344_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1411bp|location=Sequence derived from alignment at Scaffold_340:179257..180667- (Ectocarpus subulatus male Bft15b)
ATGGCGTCCAGCGTCCTGCGAGGAAAGGCGTTGTTCGCGTTCCTCCTGGA
GTCCAAGTCATTCTCCGCATACGTCGCCGACCCGGGCAAACAACGGGGCG
ACACCGAGGTAACACAGTCCGCAGCAGTCTTGTCGAGCGCGAGACGTTTG
CGCACAACGTTTCGTGTCTGCTGGTTGGTTGGCGTGACATCCTGCGAGTA
GAAATTTAGCCCTACAAATGGTCGACACGCACAACCCGTCCATGTCCACC
ATTTGCAGGGCTAAATTTCTACGCGCAGGATGTCACACATACCAACCAAC
CCGCAGACACGACACTTTGTGCGCACACGTCTCCCGCTCGACAACACTGC
TGCGGACTGTGTTACCTCGGTGTCGCCCCGTTGTTTGCCCGGGTCTGCGA
CGTATGCGGAGAATGACTTCGACGCTAGGAGGAACGCGTACAGAGCCGTT
CCGCGCCTGACGCTGTACCCGGAGAGCACCTCCCGGCTCACGTCCTCAAA
CCTGCCATCAGCGATTTCGAGTTGGTTGCACGGACGGTGGTTCGGACGAC
ACGGGGAGCGCAGAGCAGCGAGTGGGACACAGCGGTTTCTTGCACCTCAC
CGCCTTCGTCCAACGCCGATAGGCGCTGCCATCCAGCCCCCCGCATGGCA
GCACTCACGAAGGACGGAATCCTGAAGGGGGAAGGAGTCAAGGCCGAAGC
CTTGTCGCCCTGGACTTCCGCCCCTGGCGGCTGGCCAAGCTCGGCCTCGG
CAACGATCTCCGCGCCATGCTCCAAGCCGAGAAGAAGGCCGCCCACAAGC
GCCACGGCCCGGGCCACGCCGGCCTCCACCACCACGGCCACCTTGAGCGC
ATGGCCCACTGTGACCCCCGAGGCCCCACCGGCGGCTTTGCCCGTGGTCC
CACCGGCCTCAATATGCGCCGCCACCGCTCACAAGAAAACTCGTGTTCTT
CAGGCACAAGGAAGGCGATGCCACTTTCAGACGCATCCATCGGCAACCTC
GAGAGGTTGTCGAAGTTTGTTGATGCCGGCTACATCAAGGAGCACATCAT
GGCCAACAAGCCCATCGATGACAAGTTCGAGTCGCATATGGAGCGCATGG
CCAACTTGCTGTCCAGCGGCATGTTTACGGCGAAAGACTACCGAGAGCAG
CTAGATGCAAAAGTTGCAGACCTTTTGCGAGACGGAGCACCACGGTCGGC
AGCGGCGGACGGAGAAGCAGGGGTTGGTGGGTCGCAGGTGGGGGAGACTC
CTAGGGCCGCACAGAAAAAGGGCAAGCGCACGGCCAAGGAAGCGAGGGCC
GCGGCGAACACGATGCACGGGAACATCGTCAACTGCTGGGCCGCAGCAAC
AAACAAGCCGGTGAGTTGGTTGGAGATTCCGTTTGCATGCTTTGGCTATG
TTCGTGAATGA

Coding sequence (CDS) from alignment at Scaffold_340:179257..180667-

>EsuBft344_6a-0001 ID=EsuBft344_6a-0001|Name=EsuBft344_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_340:179257..180667- (Ectocarpus subulatus male Bft15b)
ATGGCGTCCAGCGTCCTGCGAGGAAAGGCGTTGTTCGCGTTCCTCCTGGA
GTCCAAGTCATTCTCCGCATACGTCGCCGACCCGGGCAAACAACGGGGCG
ACACCGAGGCGCTGCCATCCAGCCCCCCGCATGGCAGCACTCACGAAGGA
CGGAATCCTGAAGGGGGAAGGAGTCAAGGCCGAAGCCTTGTCGCCCTGGA
CTTCCGCCCCTGGCGGCTGGCCAAGCTCGGCCTCGGCAACGATCTCCGCG
CCATGCTCCAAGCCGAGAAGAAGGCCGCCCACAAGCGCCACGGCCCGGGC
CACGCCGGCCTCCACCACCACGGCCACCTTGAGCGCATGGCCCACTGTGA
CCCCCGAGGCCCCACCGGCGGCTTTGCCCGTGGTCCCACCGGCCTCAATA
TGCGCCGCCACCGCTCACAAGAAAACTCGTGTTCTTCAGGCACAAGGAAG
GCGATGCCACTTTCAGACGCATCCATCGGCAACCTCGAGAGGTTGTCGAA
GTTTGTTGATGCCGGCTACATCAAGGAGCACATCATGGCCAACAAGCCCA
TCGATGACAAGTTCGAGTCGCATATGGAGCGCATGGCCAACTTGCTGTCC
AGCGGCATGTTTACGGCGAAAGACTACCGAGAGCAGCTAGATGCAAAAGT
TGCAGACCTTTTGCGAGACGGAGCACCACGGTCGGCAGCGGCGGACGGAG
AAGCAGGGGTTGGTGGGTCGCAGGTGGGGGAGACTCCTAGGGCCGCACAG
AAAAAGGGCAAGCGCACGGCCAAGGAAGCGAGGGCCGCGGCGAACACGAT
GCACGGGAACATCGTCAACTGCTGGGCCGCAGCAACAAACAAGCCGGTGA
GTTGGTTGGAGATTCCGTTTGCATGCTTTGGCTATGTTCGTGAATGA