EsuBft344_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft344_5a-0001
Unique NameEsuBft344_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:188595..191247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft344_5
Protein domainsSSF54277
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length163
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft344_5aEsuBft344_5aEctocarpus subulatus male Bft15bgeneScaffold_340 188595..191247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_5a-0001-exonagat-exon-64956Ectocarpus subulatus male Bft15bexonScaffold_340 188595..188907 -
EsuBft344_5a-0001-exonagat-exon-64957Ectocarpus subulatus male Bft15bexonScaffold_340 188961..189996 -
EsuBft344_5a-0001-exonEsuBft344_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 190960..191247 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_5a-0001-exonagat-three_prime_utr-13425Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 188595..188626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_5a-0001-cdsEsuBft344_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 188627..188907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_5a-0001EsuBft344_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 188627..191247 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft344_5a-0001 ID=EsuBft344_5a-0001|Name=EsuBft344_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1637bp|location=Sequence derived from alignment at Scaffold_340:188595..191247- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACCTCTTCCATCAAGATTAACTTCCAGGGCACTTCACGCAACGT
GAATGTTCAGGCTCCGTTTACGCTCGCCAGCCTCCAAGCGACCATCGCCG
CCGCCTTCGATGCTGAGCTGCCTGTCCGCTCCCCCGCTGGAGAGGCCACC
AAGGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACAT
CGTGTTCGACAAGGATTCTGAGCTGAACCTGGCCGTGCGCCTGTGCCCGG
ACTCGCTCGAGATCTCGGCTGCCGGCAAGGAAAACAAGCCTGATAACAAG
CCCGACCCCGAAGGGAGGCTGTACAAGATTGCCGCCCGTAACCTGCGCGA
ATACAACGGCGTGCCCTCGATGACGGCGCCCAAGCTCATCAAGACCCTGG
CTTTCCTCAAGCTGAACCCGCGACGGCTCGTGAAGCAGGGCCTCGCTCCC
AAGAATCTTTTGGCTCGCATGAAGGCCGAAGCCGCCAACAACATGAAGGT
ATCGAAGGTTACTCTTGGTGACGGCGAGAACAACGAGGATCTCGCCGAGT
CGGTCGCGGCCGGTATGGAACTGATGAGCGTGGAGGACGACAAGAAGGAG
TGCAACAACGGCTTCGTGTCCGCCAAGCCGGACGCGTCTGCTGCCGCGGT
GCCCATCACCGCCAAGACGTCCTCCCCCGACAACGATAACGAGGAGGAGA
ACGACGACGCTGCGCCTGAGGTCAAGAAGAATCTCATCCACACGGCCTTC
ATCGCCGGCGGCATCCAGCTCCGCCCTCGCGAGGTGCGGCCCCTGCTCGT
CGCCCTGGACGTCCGCCCCTGGCGGCTGGCCAAGCTCGGGCTCGTCAACG
GCAAGTATCTCCGCGCCATGCTCCAAGCTGAAACGAAGGCCGCCCACAAG
CGCCACGGCCATGACAACAACAACGATGACACCGCCGCCCTCCACCACCG
GCGCCACCACCACCGCGACTACCACCGCCAGCAGCACCGCATGACCAGCC
GCCCCCACCCCTTCGCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCCCCCCTCGGCTCACCAGGAGGTTGGCGACGCCATGTTT
GCCGCGCGCGGCGGTGGCCGCCACCGCCACGGCCCCCCGCACCACCACGG
CCCACCTCCTCCGATGAAAAGGACGATGCGCGGCGGCCGCCCCCAACGCT
TCGCCCCCCCGCGCCCCTCCCGGTCCANNNNNNNNNNNNNNNNNNCCCCC
CCCCCTCCCCCGGCTCACATGGAAGACAACCACGAGGCGTCCGGTGGCGG
AGGCGTTGATCGCCGCGGTGGCCCTCTCTTCCACCCCGCCCACCAGCACT
ACACCGAGGTGTTCGACGAGGATGGGGGAGGCCACCCCGGTTTCCGACCC
TACCATGGCCCTCCTCGCTGGATGGCGATCCGCAGGGCTCACGGCGGCGG
TGGCTACGGTGGTGGCTACGGCAGTGTCTTCGGCGGCGATGTTGGCCAGC
AGTAGCGCAGGGACTACCACTGGGGGTGAGCATCTTC
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protein sequence of EsuBft344_5a-0001

>EsuBft344_5 ID=EsuBft344_5|Name=EsuBft344_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=534bp
MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEAT
KDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNK
PDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAP
KNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKE
CNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAF
IAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHK
RHGHDNNNDDTAALHHRRHHHRDYHRQQHRMTSRPHPFAPPXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSAHQEVGDAMF
AARGGGRHRHGPPHHHGPPPPMKRTMRGGRPQRFAPPRPSRSXXXXXXXP
PPPPAHMEDNHEASGGGGVDRRGGPLFHPAHQHYTEVFDEDGGGHPGFRP
YHGPPRWMAIRRAHGGGGYGGGYGSVFGGDVGQQ
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mRNA from alignment at Scaffold_340:188595..191247-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft344_5a-0001 ID=EsuBft344_5a-0001|Name=EsuBft344_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2653bp|location=Sequence derived from alignment at Scaffold_340:188595..191247- (Ectocarpus subulatus male Bft15b)
ATGACTACCTCTTCCATCAAGATTAACTTCCAGGGCACTTCACGCAACGT
GAATGTTCAGGCTCCGTTTACGCTCGCCAGCCTCCAAGCGACCATCGCCG
CCGCCTTCGATGCTGAGCTGCCTGTCCGCTCCCCCGCTGGAGAGGCCACC
AAGGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACAT
CGTGTTCGACAAGGATTCTGAGCTGAACCTGGCCGTGCGCCTGTGCCCGG
ACTCGCTCGAGATCTCGGCTGCCGGCAAGGAAAACAAGGTGAGCGACGAG
TCGGGAGACGAAATAATCACGGTGTAGCCGAGGGTGCAATTTGCGCGAGC
GGGCACACATACTAGTAGGGCGCAGGTTTCGATGCCGTAACGGTTAACTA
ATCGTGCTGCGATCCTCATGTCCCGTGCTCGCGCTGCTCCATTCGTTTTA
GAGATGGTCTTGTTTTTGGTTGCTTGTTTTGGTGAGCGAGACTTTGGATG
TGAATCGAAGTTCTTCGGCCCCAAATCTCGGGTTTATGTCTCTCAGCTGT
CGACGCCTCTTGTGTTGAGTTGGTCTCCGTGTCGACCTTCCCCGTCTTAC
TTTCATCACCTGCCGAGAGGTATCATTGATCATGTGGTGTCACCCGATAC
GATATGGTATCGTCCGATACGATGTGTGGCGATTGTCTCTATCGTAGACT
GCCTTCAAAACTCGATACAATCGGTCTGACGGTGTGTAGACTATAGAATA
ATATGCTTCTACACGTAGGAACGAGAAACAATCTTCTGTACACATATGCA
TGCACTGCTGCCGTGCTGTTTTTTTCTGTGCACAGCATCAGCGTACATCA
ACAGCATCAGCGTAGGTAGAGTCTGGTGCTTTAATTCCGTGCAAAACTAT
GACAAAAAAAATATCCACCGATCCTTTTATCTCCAACCCCCTCACATATC
ACATTTTTGCTGAACGTTAACCGCCCTCATGTCAACGTTATGTGTGTGCA
CAGCAGTCAGTCATACCCGCCTTTCTCGGTGATCAAATGCTATTCGACCT
GATTTTTTTGTTTTCGTTGTCGGCATTTTCGCATGGAAATGTCTTCGTCG
TTCTTGTTGCTGTTTCCAAAGTTGGCTCCGTTTTACCTGTACCGCCAAGA
ATTCCTTTTCCCCCACAACCGCACCCCGCTGAATCCCCCCTTGCCTTTCC
TTCGCCACCCTGTGCACCTCTTCTCTCTTTCCTCGTCACATGAAACCTCA
GCCTGATAACAAGCCCGACCCCGAAGGGAGGCTGTACAAGATTGCCGCCC
GTAACCTGCGCGAATACAACGGCGTGCCCTCGATGACGGCGCCCAAGCTC
ATCAAGACCCTGGCTTTCCTCAAGCTGAACCCGCGACGGCTCGTGAAGCA
GGGCCTCGCTCCCAAGAATCTTTTGGCTCGCATGAAGGCCGAAGCCGCCA
ACAACATGAAGGTATCGAAGGTTACTCTTGGTGACGGCGAGAACAACGAG
GATCTCGCCGAGTCGGTCGCGGCCGGTATGGAACTGATGAGCGTGGAGGA
CGACAAGAAGGAGTGCAACAACGGCTTCGTGTCCGCCAAGCCGGACGCGT
CTGCTGCCGCGGTGCCCATCACCGCCAAGACGTCCTCCCCCGACAACGAT
AACGAGGAGGAGAACGACGACGCTGCGCCTGAGGTCAAGAAGAATCTCAT
CCACACGGCCTTCATCGCCGGCGGCATCCAGCTCCGCCCTCGCGAGGTGC
GGCCCCTGCTCGTCGCCCTGGACGTCCGCCCCTGGCGGCTGGCCAAGCTC
GGGCTCGTCAACGGCAAGTATCTCCGCGCCATGCTCCAAGCTGAAACGAA
GGCCGCCCACAAGCGCCACGGCCATGACAACAACAACGATGACACCGCCG
CCCTCCACCACCGGCGCCACCACCACCGCGACTACCACCGCCAGCAGCAC
CGCATGACCAGCCGCCCCCACCCCTTCGCCCCGCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTCGGCTCACCAGGAGGTTGG
CGACGCCATGTTTGCCGCGCGCGGCGGTGGCCGCCACCGCCACGGCCCCC
CGCACCACCACGGCCCACCTCCTCCGATGAAAAGGACGATGCGCGGCGGC
CGCCCCCAACGCTTCGCCCCCCCGCGCCCCTCCCGGTGTTTGCCATCGGG
ATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCANNNNNNN
NNNNNNNNNNNCCCCCCCCCCTCCCCCGGCTCACATGGAAGACAACCACG
AGGCGTCCGGTGGCGGAGGCGTTGATCGCCGCGGTGGCCCTCTCTTCCAC
CCCGCCCACCAGCACTACACCGAGGTGTTCGACGAGGATGGGGGAGGCCA
CCCCGGTTTCCGACCCTACCATGGCCCTCCTCGCTGGATGGCGATCCGCA
GGGCTCACGGCGGCGGTGGCTACGGTGGTGGCTACGGCAGTGTCTTCGGC
GGCGATGTTGGCCAGCAGTAGCGCAGGGACTACCACTGGGGGTGAGCATC
TTC
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Coding sequence (CDS) from alignment at Scaffold_340:188595..191247-

>EsuBft344_5a-0001 ID=EsuBft344_5a-0001|Name=EsuBft344_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1605bp|location=Sequence derived from alignment at Scaffold_340:188595..191247- (Ectocarpus subulatus male Bft15b)
ATGACTACCTCTTCCATCAAGATTAACTTCCAGGGCACTTCACGCAACGT
GAATGTTCAGGCTCCGTTTACGCTCGCCAGCCTCCAAGCGACCATCGCCG
CCGCCTTCGATGCTGAGCTGCCTGTCCGCTCCCCCGCTGGAGAGGCCACC
AAGGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACAT
CGTGTTCGACAAGGATTCTGAGCTGAACCTGGCCGTGCGCCTGTGCCCGG
ACTCGCTCGAGATCTCGGCTGCCGGCAAGGAAAACAAGCCTGATAACAAG
CCCGACCCCGAAGGGAGGCTGTACAAGATTGCCGCCCGTAACCTGCGCGA
ATACAACGGCGTGCCCTCGATGACGGCGCCCAAGCTCATCAAGACCCTGG
CTTTCCTCAAGCTGAACCCGCGACGGCTCGTGAAGCAGGGCCTCGCTCCC
AAGAATCTTTTGGCTCGCATGAAGGCCGAAGCCGCCAACAACATGAAGGT
ATCGAAGGTTACTCTTGGTGACGGCGAGAACAACGAGGATCTCGCCGAGT
CGGTCGCGGCCGGTATGGAACTGATGAGCGTGGAGGACGACAAGAAGGAG
TGCAACAACGGCTTCGTGTCCGCCAAGCCGGACGCGTCTGCTGCCGCGGT
GCCCATCACCGCCAAGACGTCCTCCCCCGACAACGATAACGAGGAGGAGA
ACGACGACGCTGCGCCTGAGGTCAAGAAGAATCTCATCCACACGGCCTTC
ATCGCCGGCGGCATCCAGCTCCGCCCTCGCGAGGTGCGGCCCCTGCTCGT
CGCCCTGGACGTCCGCCCCTGGCGGCTGGCCAAGCTCGGGCTCGTCAACG
GCAAGTATCTCCGCGCCATGCTCCAAGCTGAAACGAAGGCCGCCCACAAG
CGCCACGGCCATGACAACAACAACGATGACACCGCCGCCCTCCACCACCG
GCGCCACCACCACCGCGACTACCACCGCCAGCAGCACCGCATGACCAGCC
GCCCCCACCCCTTCGCCCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCCCCCCTCGGCTCACCAGGAGGTTGGCGACGCCATGTTT
GCCGCGCGCGGCGGTGGCCGCCACCGCCACGGCCCCCCGCACCACCACGG
CCCACCTCCTCCGATGAAAAGGACGATGCGCGGCGGCCGCCCCCAACGCT
TCGCCCCCCCGCGCCCCTCCCGGTCCANNNNNNNNNNNNNNNNNNCCCCC
CCCCCTCCCCCGGCTCACATGGAAGACAACCACGAGGCGTCCGGTGGCGG
AGGCGTTGATCGCCGCGGTGGCCCTCTCTTCCACCCCGCCCACCAGCACT
ACACCGAGGTGTTCGACGAGGATGGGGGAGGCCACCCCGGTTTCCGACCC
TACCATGGCCCTCCTCGCTGGATGGCGATCCGCAGGGCTCACGGCGGCGG
TGGCTACGGTGGTGGCTACGGCAGTGTCTTCGGCGGCGATGTTGGCCAGC
AGTAG
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