EsuBft344_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft344_14a-0001
Unique NameEsuBft344_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:81759..82759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft344_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length23
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft344_14aEsuBft344_14aEctocarpus subulatus male Bft15bgeneScaffold_340 81759..82759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_14a-0001EsuBft344_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 82392..82759 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_14a-0001-exonagat-exon-64995Ectocarpus subulatus male Bft15bexonScaffold_340 81759..81770 +
EsuBft344_14a-0001-exonagat-exon-64994Ectocarpus subulatus male Bft15bexonScaffold_340 82034..82135 +
EsuBft344_14a-0001-exonEsuBft344_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 82348..82425 +
EsuBft344_14a-0001-exonagat-exon-64993Ectocarpus subulatus male Bft15bexonScaffold_340 82716..82759 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_14a-0001-exonagat-five_prime_utr-8511Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 81759..81770 +
EsuBft344_14a-0001-exonagat-five_prime_utr-8512Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 82034..82135 +
EsuBft344_14a-0001-exonagat-five_prime_utr-8513Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 82348..82391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft344_14a-0001-cdsEsuBft344_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 82392..82425 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft344_14a-0001 ID=EsuBft344_14a-0001|Name=EsuBft344_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=236bp|location=Sequence derived from alignment at Scaffold_340:81759..82759+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGTTTCATACGGAGGAGAACTCGACGGGATGGACGAGATAGGCTAGCTA
GGCGTTGATTCGGGCGAACGCTGCGGCAGCTTGGATTGTGCCAATGGTCA
GATAAGCTCAAGGGAGGAGGGACAGTCCCGTGGGGTTTGGCCGCGCAACC
CTCTATAGATGGGAGAGAATCGCGGGAGGATGGGCAATGATGGGCTGAAG
ATGCCTGGTTTTTTCAATGTGTCGCCGACAAAATAG
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protein sequence of EsuBft344_14a-0001

>EsuBft344_14 ID=EsuBft344_14|Name=EsuBft344_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=25bp
MGENRGRMGNDGLKMPGFFNVSPTK
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mRNA from alignment at Scaffold_340:81759..82759+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft344_14a-0001 ID=EsuBft344_14a-0001|Name=EsuBft344_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1001bp|location=Sequence derived from alignment at Scaffold_340:81759..82759+ (Ectocarpus subulatus male Bft15b)
CAGTTTCATACGGTAAGCAAAAATGGGACGGAAAAAGAATGTACTAAACG
ATAAATTGTAATGGTTTGCGAAACCAAGTTTCGTGGGTGCTCCTACTGGA
GTTCCCATCTCTAAAGTGTTCATATTACTGCAGGAACACACCGCTGTGTG
TAAATCACCAGTGCACCGAAGGGGAGGTGGTGATCGGTGGAATGAGGCTG
AGAAACAAATCCTTACTTCCTTGAATTGAACCGCACACCCAAATGATTAT
CGTGCACGTACATGTGTGTTCGAAGGAGGAGAACTCGACGGGATGGACGA
GATAGGCTAGCTAGGCGTTGATTCGGGCGAACGCTGCGGCAGCTTGGATT
GTGCCAATGGTCAGATAAGCTCAAGGGGTGAGTGGTACCGACCCGGAGAG
GGCTGTGTGGTGTGTGGAACTATGGCTGATGTGTCGGTTCTCGGTAATTG
GAGGTACTCCACCCCCTACAGCCCATGAAAAAAGTATTGTTTGTGCAAAC
GAATCACGCCCTTTCGCTCCCAACCACTGACCCTTGTTGTTGTGATCGAC
TTGGCGCGCTCATATGGACAATCGGATTGCGCCTAAAAGAGGAGGGACAG
TCCCGTGGGGTTTGGCCGCGCAACCCTCTATAGATGGGAGAGAATCGCGG
GAGGATGGGCAATGATGGTAAGCGAGGAACACCCTAATGACATAATGATG
CTATGTCGTGTTCCCCCGATGCTGCATGTATCTCTCTTGTTCGGCGTATG
TAGACGCCATCCACATTTGCCATCGATCGCCTTCAAACACTTCGTAGCCC
GGGATTTTTCATTTTCCGTATCCGCGGTGTTTCATGTTTGAAACTTGAGT
TGCGGATACAGCAGTGCTAACGCTGTCTCCTGCTCCCCACCGGTCCCGAA
GAGCAAACCCGAATATCAGTGATACAAATCGCAGATAAGTGTAACCGCGC
GCCGCAGGGCTGAAGATGCCTGGTTTTTTCAATGTGTCGCCGACAAAATA
G
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Coding sequence (CDS) from alignment at Scaffold_340:81759..82759+

>EsuBft344_14a-0001 ID=EsuBft344_14a-0001|Name=EsuBft344_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=78bp|location=Sequence derived from alignment at Scaffold_340:81759..82759+ (Ectocarpus subulatus male Bft15b)
ATGGGAGAGAATCGCGGGAGGATGGGCAATGATGGGCTGAAGATGCCTGG
TTTTTTCAATGTGTCGCCGACAAAATAG
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