EsuBft343_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft343_8a-0001
Unique NameEsuBft343_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:285508..290948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGT3
ProteomeIdEsuBft343_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length185
Hectar predicted targeting categorychloroplast
Evalue8.32e-129
EggNOG OGs2C0DF@1|root,2S41X@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005130.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8aEsuBft343_8aEctocarpus subulatus male Bft15bgeneScaffold_246 285508..290948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8a-0001EsuBft343_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 286602..290861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8a-0001-exonagat-exon-30047Ectocarpus subulatus male Bft15bexonScaffold_246 285508..286670 -
EsuBft343_8a-0001-exonagat-exon-30049Ectocarpus subulatus male Bft15bexonScaffold_246 287311..287386 -
EsuBft343_8a-0001-exonagat-exon-30046Ectocarpus subulatus male Bft15bexonScaffold_246 287783..287916 -
EsuBft343_8a-0001-exonagat-exon-30048Ectocarpus subulatus male Bft15bexonScaffold_246 288393..288512 -
EsuBft343_8a-0001-exonEsuBft343_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 289432..289532 -
EsuBft343_8a-0001-exonagat-exon-30045Ectocarpus subulatus male Bft15bexonScaffold_246 290388..290441 -
EsuBft343_8a-0001-exonagat-exon-30050Ectocarpus subulatus male Bft15bexonScaffold_246 290744..290948 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8a-0001-exonagat-three_prime_utr-13408Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 285508..286601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8a-0001-cdsEsuBft343_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 286602..286670 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_8a-0001-exonagat-five_prime_utr-8499Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 290862..290948 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft343_8a-0001 ID=EsuBft343_8a-0001|Name=EsuBft343_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1853bp|location=Sequence derived from alignment at Scaffold_246:285508..290948- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTCGTCTTTCGGTGCCGCTCGAGAAGCACACACGCATTCTTTACTCTTC
GACCTCTCTCCTCGTCCGAACCTCCGAAGTCACCACCATGAAGTCTGCGT
TCCTTGCGGCTGTTCTCGCCCTCCTTTCGGTGGCCTCCACCGACGCGTTC
GTCGCGGGATCCGCGAAGCTCCCCGTACGCACAGCAGCATCCTCTGCCCG
AACAGCTGCCGTCGAGATGAGCGCGGAGCCGCAGTCGAGACAAGCGTTCC
TTCAGCAAGGCGTGGCGGGCGTGCTCTCGCTCGCGGGGATCGCGGCACTG
TCTCAGCCCGCGTCGGCCGGTGGCCTCTCTCCCGTCAGCAACAGCGACAA
GTGGGCTGGGGTGCTGGACCCGCGGTCGGCAGTGAAGGACTCCAACAAGA
TGGCGTCGGACGGGGTGAAGAAGGACCTCGCGGCACTGAAGACTTACCAG
AGTGCCACCAAGGACATATCTGACGCCCTGGCCAAGGACCCCCAGGCGAA
CGTGTTGCCGAAGGTCCAGCAGACCTTCAAGTTCGCCGAGTTCCGCCAGG
TGCTCAACGAGGTGAACGACGTCTTCGACGAGGACACCCAGAGGGGTACC
GACCTCATCATCCGGAACATGCTTCAGGATGCCCTGGAGCTTTCGCAGGC
CTCCAAGATGAAGCCGGACGTCCCCCGGTCCGCGCGCAAGGTGGAGGTAT
TGACCAAGAAGTTGAAGAAGCTGGACCAGGCGTTCGACACCCTCAACGCG
TACCTCTAGGTCGAGCGACTTGCTTACCAGCAGTACCGTATCTCCGGGTC
GAAGGCGCGCTGGGGGGGGCGATCCAGCTGAGGCTTCCAAGTTTCTCTCG
GCCCACATATAGACAATTAGTGCAAAGGCAAAGAAATAGGGTCGATGCAA
TGGCACTCTGCCTCTCAACATTTCCATGTGTGCGGGATGCACCGCCCTTT
TCCCCAATGCCGTAACAAGGGGTCCTGTGGGTTCAGTTAGCCTCAGGGGG
CACGGCGGAATGACAGCGGCTCGCCTGGGGGCCATCTCCAGGGGGGCAAA
GGAACCGCTACAGCAGTATTCCGCGAAGAATAGAGGTGCTTGGCCGGACT
GTAGAACAGCAGACGGGGGACTACACGGCTGGCATGCCCAACGTTTAGTG
TTTTTTTTTGTGTAGAAAAGTTCTTGCTGATTGCTGGCTGGCCACACAGC
CCGTCACGTGTTGTTGGGTAGAGATAAAGATGGTGTCGTTCCGACGTGTC
CCCGTCCGAGGGGGGCGAGGTTCTGATACGCTTGTTCCTGTGCGCATGGA
AACTGCGGCGGTGCCCCGTGACAAAAGATTCGGGCGAAAGGATGTGCGGG
AGGAGGTGGCACCCCCGTCTCTTTTTTTCGAGTAAACGCGCTCAGGTAGC
CTCTGGTTCTCCAGCGCTCCGTAGACTTTTTAGTTTGTTCGTGTTGTAGT
CGCCGTTCTGTGTCATATCACGGAACACACGGGGGGGGGGTCGGTAGAAT
GTAGTTGCAGGTGGGTCTGCCGCCTGTGTTCGAAAATCGTCTCATCGCCC
ACATGCATGCGCGGGAGGCTAGCCTGAGGAAACAACGGCGTGTTTTTCCG
TTTGTGGGAACAAAAAAAACGTAGAACCGAGGTTCCTGCTTGCCGAGATG
ATGGCACCAGCGCCGTCACGAAAAAAATGTCTCGGGACAAATTGCCCATC
CCAGCTCAGAGGTCTTCTATGAAGAGAGGAAAGGAAGAGCGGGTGCGGCG
GTGCGCCAGAGCCACTACAGAAAAATTCCTCTGTTTTTGACCTTTCGCGG
CTCATGGCACTGTTGGCTACTTTGTTGCTTTCGCTGGTGGGGGATTCTGC
GAG
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protein sequence of EsuBft343_8a-0001

>EsuBft343_8 ID=EsuBft343_8|Name=EsuBft343_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MKSAFLAAVLALLSVASTDAFVAGSAKLPVRTAASSARTAAVEMSAEPQS
RQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPRSAVK
DSNKMASDGVKKDLAALKTYQSATKDISDALAKDPQANVLPKVQQTFKFA
EFRQVLNEVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSAR
KVEVLTKKLKKLDQAFDTLNAYL
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mRNA from alignment at Scaffold_246:285508..290948-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft343_8a-0001 ID=EsuBft343_8a-0001|Name=EsuBft343_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5441bp|location=Sequence derived from alignment at Scaffold_246:285508..290948- (Ectocarpus subulatus male Bft15b)
TTTCGTCTTTCGGTGCCGCTCGAGAAGCACACACGCATTCTTTACTCTTC
GACCTCTCTCCTCGTCCGAACCTCCGAAGTCACCACCATGAAGTCTGCGT
TCCTTGCGGCTGTTCTCGCCCTCCTTTCGGTGGCCTCCACCGACGCGTTC
GTCGCGGGATCCGCGAAGCTCCCCGTACGCACAGCAGCATCCTCTGCCCG
AACAGGTGGGAGGAACATCATCACCTACACGACACATCATGACATTCAGC
ACCCTGTTCATGAGATGAGAATTAGGTCTTGTGCTGCGCGCGTAGCTGAG
AGTTCTGCATGAGATAGGACAAGACCCTTGCCTGCGGTGGATGCACGAAG
TATTGCGCCAGCACGAGATGTAGTAATAGCGAGCAATCCAACTCGAATTG
CTCCGTTCAAAGGGTTGCAATCGTATCGATCCAGTCGTTAGCACGCACAC
TTGTTCTTGCGTCCCACGGACCTTTCTCTGCCCGAACTCCCGTCCCTGCT
GCCGTAGCTGCCGTCGAGATGAGCGCGGAGCCGCAGTCGAGACAAGCGTT
CCTTCAGCAAGGTGAGAGCTACCGTCTTCCCTCTTGCCGTTGCTGTCAAC
GCTGTTTACCACAGCATCACGAGTTTATTTTCTTTTCTATTCCACACAGT
AAAAGGAGTACGCAATCTCGAGCGTGCGCTGTCTCTCTCTCGTCTCTTTT
TCTCTCTCAACAACCGTACACGTCACACATGTATCTGATTAGGTGCAGTT
ACACCTCTCGCAATGGAACCAGCGTTTTTCACGGACTCGTCTCCATGAGC
ACCAACGCGTTGACTTCGTTCGCTGTACGAAGTCCGCGTTATTCTCTCTG
GCACAACACATACGTACCCATTGCACGCGGCCGGTGGAATCGTTGTTCCA
ACTGATCAAACGAATGGGTGCTGGCTGGTTGACCACTCTTTCCGTAGCAC
TTGTTTCCCTCTCAAAGCGGCCGTGACCAGACGCCTGGTACAATTGCAAT
GTTATCGGCTAGTTGGCACGCATGATGTTGCTTGCTTCCATTCGCTCAGT
CATCAAGACGTTGCGTCGGTGTACAGGTAGAGCTCTTCAACGCACCGGTG
CCCCTGGACACTGCAGCCGATGTCTGTCAGGATCCATTGTGAACATAAGC
CGTGTCACTTTCTACAATGTATATCCCCGTGTTTAGCAACGCTTTTCCTG
CCCAAACATATTGTCACCTCGCTCGTCGTAGCGCCGATTTCGCCGAAGAT
TTACGTGTTTGCGGACCTGGTGCCAGACCTGGTTGATTGCCATTCATCTA
GGCCTTGGCCGTCCTTGAGGATTACGACACGCGATGTAGTTGCCACCGGT
TTTACATGAAGTCAACATGAAGGTGGCATCGCTTTATTCCACGACATTCT
ACGCAAACACTCGCAGGCGTGGCGGGCGTGCTCTCGCTCGCGGGGATCGC
GGCACTGTCTCAGCCCGCGTCGGCCGGTGGCCTCTCTCCCGTCAGCAACA
GCGACAAGTGGGCTGGGGTGAGTGAGTGTTGCACGAGCTTGAACGGCGCG
ATTGTTCGACGTGTACGGAAGGGGGTGCCGGGGAGTGGGAATTTGTGCAG
ACCCTATCGCTTCTCTTGTGTGCAAGCGGAGAAGGAGCACACCATGCGGT
TTCCGCGGTTGCCGCCGTCGAGACCATCATTGGGCGTGTACCAGTTCAGG
CACAAGCGCCCCTGCGTTTTGTATTGTTATCTCGTTGACGGGACGGGCAC
GTGTACATACTCTGCCGTCGCAGCTTTCCGCACCCCCCCCCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCCCCCCCGCCCGAAAATATCGATGGACCTATCCGGTGGAGTTCGGT
GTCATCGCTCATGCTGCGGCAGTCTGCTGCTGCAGTATCTGGAGTTCTCT
CGCGCATCTACATCGGAAGCAACCCAACACAAGGCGTGACCAAGAGCTAC
CTTGTGTAAACGAGCGAGAGTTTAGCAACATACACAGAAACGTCGCACAT
GAAACAGTATCAGCTGAAACGTTTACTTGTCCGTCAGATCTAGGCGGTGT
GCTGGCCAATTGTCTCCTCCAAAACGAACACCTGCGATTCCGCTCCGCGA
CCTACTTAAGGTGCTGCCTAGTAGCGTAATTTCCTGACAGCACATGCAAC
AACTTGCGCAAAGGATGCCCTAATGTCTGTTGACGTATCATTTGCACGCA
CGCGATAGGATGAGACAAGCATGCTCCTTACCCTCCGCAGACCAAGGCCT
GGTTGTTCGCGAGATTTCCATCCGTAGCAGTAGACGCGATGGTCTTCGAT
ATCGATAATAACGTACCTACATGGTCGAACAACCAAGGTCAGCAACAACT
GCGTACCCTCGCCCCCCGGTACGTGTTGCGCTCAAGGTGCTGGACCCGCG
GTCGGCAGTGAAGGACTCCAACAAGATGGCGTCGGACGGGGTGAAGAAGG
ACCTCGCGGCACTGAAGACTTACCAGAGTGCCACCAAGGACATATCTGAC
GCCCTGGTATGAGAAATTTTGAGTTTTCGATTTGGTTGTAGCCGGTGCTG
GTGCTTTTGCGCGTAAGCTTTGATGTCGTGCCGCAGATGGCAGAGGTTTG
GCGTGAGAGCTTTTGTTCCGTTTTGGGTGTTCGTGTTGATACGGGTGTTA
TTTGGCGCTGTTGTTTTTCATTCAGCACTATCACACACCTGCGGTATTTT
TCATGTGTGCTCTTCGGTTTGCGCAATTTTTTCTTGTCCTTGTCATTCCG
TCTCCTCCATATGACGCTACTGCCATGCCGCGCCCTGTCGTGTGCGGGGT
CTCGAGCTTCCAGATTGCGCGCTGGCCCTGACCCTCTCGACCTCACTTGT
AACCCCACCCACCCTCTCTTATGATTCTCACCCCCACCTGCAGGCCAAGG
ACGTAGCCCTACCCATCTCCGACCTAACTTGCAATCGAATCCACCTACGC
TATCTGATTGTACCTTGCCCCTACTTTTGCAGGCCAAGGACCCCCAGGCG
AACGTGTTGCCGAAGGTCCAGCAGACCTTCAAGTTCGCCGAGTTCCGCCA
GGTGCTCAACGAGGTGAACGACGTCTTCGACGAGGACACCCAGAGGGGTA
CCGACCTCATCATCCGGTAAGCGTTATTCCGTCTAGGCATCGTGCTTACG
TCGAACTTGCTGTTTTCGTACGCGTCCACACGCCAAGAGGATGGGGACGG
CGAAATTACTCCTCAGACTGTAGATAAAACGACTACAGTGGCGGCTATAC
TTTCATAGAGAGTTGGGACAAGCCAGGATTTCTCTCTTCGTTCCGTTTCC
GTACTGTGAAATGTATGACGTATCTCTGATGGTCGTGACAAGGCAATTTG
ACTCTCAAATCGGTACTTTTTCGTAAAATATTCTCTCTTAAACCGTAGCC
GCTATTGTACGGTAAATAAACCAACATGTCTTCGTTCTCGGAAAACTACG
CTTTTCACTACATGCCCTTCTGAGTTTTTTTACCGGGTGAAATCTCCTGA
AATTTTCCTCAGGAACATGCTTCAGGATGCCCTGGAGCTTTCGCAGGCCT
CCAAGATGAAGCCGGACGTCCCCCGGTCCGCGCGCAAGGTTTGTCGATGG
AATGGGGGCATGTAGCTGGTCTGTCAATCTTCGGTGGGCGGGGGCGGGAG
GTCGTACTCATGTTTTGCGTGACTTAGCTGTGTAGACCATGGACCACGCG
TCCTCGAGAGGACGGGTCAATCTTGTCGAGAGGGGCGTTTTCCCCCGACT
GAGGTCGTTGGCAGGTGGCGGTGTGATTTTGCGTGAGCGTACACATCCAC
TCAATCTCTGCACGAAAATAGTGTCTGGTGCGTTTGGCAATGTTTCAACG
ACAGCCGTGCCGCCAACGGGAGAAGGACGGGGAGCCGACGCTCAAACCAC
CGTGTGTGGGCGGAGATGGCAGTGTTATGTCGTGTGTTGTGCGAGTTGTA
CGATAACAGGGAGAGCGGGACACGGGTTGAAAAGCGACGTGCTTACCGAT
GCAGCATGATCGTGCGGAGTGCGACGAGCGAAAAATCCTCATTGTTCAAT
CAACCGGAAAAGAACCGTTGATGAAAATATTAAACTCGTACACATGTTGG
CGCCTATGCCGATGGCTTTCGTTTTTTTTCGCTTTTCTCGCCTCTATCCG
TGCGATGTATCCCATTCATTGGCATCTTCGGCAGCCGTACTGACATGCTC
CCCCCTTTTTTTTTGGCCGTCGTCGCAGGTGGAGGTATTGACCAAGAAGT
TGAAGAAGCTGGACCAGGCGTTCGACACCCTCAACGCGTACCTCTAGGTC
GAGCGACTTGCTTACCAGCAGTACCGTATCTCCGGGTCGAAGGCGCGCTG
GGGGGGGCGATCCAGCTGAGGCTTCCAAGTTTCTCTCGGCCCACATATAG
ACAATTAGTGCAAAGGCAAAGAAATAGGGTCGATGCAATGGCACTCTGCC
TCTCAACATTTCCATGTGTGCGGGATGCACCGCCCTTTTCCCCAATGCCG
TAACAAGGGGTCCTGTGGGTTCAGTTAGCCTCAGGGGGCACGGCGGAATG
ACAGCGGCTCGCCTGGGGGCCATCTCCAGGGGGGCAAAGGAACCGCTACA
GCAGTATTCCGCGAAGAATAGAGGTGCTTGGCCGGACTGTAGAACAGCAG
ACGGGGGACTACACGGCTGGCATGCCCAACGTTTAGTGTTTTTTTTTGTG
TAGAAAAGTTCTTGCTGATTGCTGGCTGGCCACACAGCCCGTCACGTGTT
GTTGGGTAGAGATAAAGATGGTGTCGTTCCGACGTGTCCCCGTCCGAGGG
GGGCGAGGTTCTGATACGCTTGTTCCTGTGCGCATGGAAACTGCGGCGGT
GCCCCGTGACAAAAGATTCGGGCGAAAGGATGTGCGGGAGGAGGTGGCAC
CCCCGTCTCTTTTTTTCGAGTAAACGCGCTCAGGTAGCCTCTGGTTCTCC
AGCGCTCCGTAGACTTTTTAGTTTGTTCGTGTTGTAGTCGCCGTTCTGTG
TCATATCACGGAACACACGGGGGGGGGGTCGGTAGAATGTAGTTGCAGGT
GGGTCTGCCGCCTGTGTTCGAAAATCGTCTCATCGCCCACATGCATGCGC
GGGAGGCTAGCCTGAGGAAACAACGGCGTGTTTTTCCGTTTGTGGGAACA
AAAAAAACGTAGAACCGAGGTTCCTGCTTGCCGAGATGATGGCACCAGCG
CCGTCACGAAAAAAATGTCTCGGGACAAATTGCCCATCCCAGCTCAGAGG
TCTTCTATGAAGAGAGGAAAGGAAGAGCGGGTGCGGCGGTGCGCCAGAGC
CACTACAGAAAAATTCCTCTGTTTTTGACCTTTCGCGGCTCATGGCACTG
TTGGCTACTTTGTTGCTTTCGCTGGTGGGGGATTCTGCGAG
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Coding sequence (CDS) from alignment at Scaffold_246:285508..290948-

>EsuBft343_8a-0001 ID=EsuBft343_8a-0001|Name=EsuBft343_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_246:285508..290948- (Ectocarpus subulatus male Bft15b)
ATGAAGTCTGCGTTCCTTGCGGCTGTTCTCGCCCTCCTTTCGGTGGCCTC
CACCGACGCGTTCGTCGCGGGATCCGCGAAGCTCCCCGTACGCACAGCAG
CATCCTCTGCCCGAACAGCTGCCGTCGAGATGAGCGCGGAGCCGCAGTCG
AGACAAGCGTTCCTTCAGCAAGGCGTGGCGGGCGTGCTCTCGCTCGCGGG
GATCGCGGCACTGTCTCAGCCCGCGTCGGCCGGTGGCCTCTCTCCCGTCA
GCAACAGCGACAAGTGGGCTGGGGTGCTGGACCCGCGGTCGGCAGTGAAG
GACTCCAACAAGATGGCGTCGGACGGGGTGAAGAAGGACCTCGCGGCACT
GAAGACTTACCAGAGTGCCACCAAGGACATATCTGACGCCCTGGCCAAGG
ACCCCCAGGCGAACGTGTTGCCGAAGGTCCAGCAGACCTTCAAGTTCGCC
GAGTTCCGCCAGGTGCTCAACGAGGTGAACGACGTCTTCGACGAGGACAC
CCAGAGGGGTACCGACCTCATCATCCGGAACATGCTTCAGGATGCCCTGG
AGCTTTCGCAGGCCTCCAAGATGAAGCCGGACGTCCCCCGGTCCGCGCGC
AAGGTGGAGGTATTGACCAAGAAGTTGAAGAAGCTGGACCAGGCGTTCGA
CACCCTCAACGCGTACCTCTAG
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