EsuBft343_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft343_25a-0001
Unique Name	EsuBft343_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:452183..454348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft343_25
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	194
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a	EsuBft343_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 452183..454348 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a-0001-exon	agat-exon-30120	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 452183..452797 +
EsuBft343_25a-0001-exon	EsuBft343_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 453022..454348 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a-0001-exon	agat-five_prime_utr-8494	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 452183..452516 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a-0001-cds	EsuBft343_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 452517..452797 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a-0001-exon	agat-three_prime_utr-13400	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 453239..454348 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_25a-0001	EsuBft343_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 452517..453238 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:452183..454348+
coding sequence from alignment at Scaffold_246:452183..454348+

spliced messenger RNA

>EsuBft343_25a-0001 ID=EsuBft343_25a-0001|Name=EsuBft343_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1942bp|location=Sequence derived from alignment at Scaffold_246:452183..454348+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTC
GAGCTCAGTCACATATCCGTCCAGGTGGGCATAAATGCCCGTTTCGACTG
CTGTAGCCACTCCCTCACACGCTGCTTTGAGAATCTTCCACGTCGCTAAG
TTCCAGTTGCCCCTCATCGCCGGGCGCGCTTCCCGACGTTTGGTAAGGGC
CTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACACCACTCCTGCGTGC
GGCGTCTCCGCGATTCCTCCCCCAGGGTCGTACGCGCTGCGTCGAGGAGA
GCATTGGTAAAGTCGGTCGCCAATTCCGCGGCGGTGGTTGTTCGCTCGTC
CAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGCACACCGTG
CTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTTCTGTTTCGGTTTA
GTCCGGACTGCACGGTTGTGGGCAAGCCTGCCACCGAGGTTGACGGTGGC
TACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAACCGGCTGGG
GGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCCTTGTCAGG
ATGTAGTCAAGGCGCTTGCAATCGTTTCCCGACACACCGTTGTATGTGTG
CCATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTCGTGAGAGCTAGCC
TGTTTTCCGTTGCGAAGTTCAACAGTAGCATGCCATTGTCGTTGAGCTCA
TCACGCCCGTACATTCCTATTACCCTTCCGTCCCCTCCGTCCAACCTCTC
TCCCGTCCGCGCGTTGGCATCCAGTAGGACATACACACATTCTTTGGAAG
GGATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAACACGCGCTTGCTG
TCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGACCGC
TCCACGGTGGCCTGCCAACAGAAACCTCATGGCCATTAGGCGTTCGTCGA
TAAACTCCGTAGTGAACGTGGATGTCTTGCACAGGGACTCTTTGACGGCT
ATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCAGAACACCCG
GAAACCCGCTGCTGCAAATTCCGTTCGACCTGCCCTCAGTGTCTCCTGCA
TTCCTACTACCGATACGTCTAGTCTCGCTGCCTCGTGAAGAACGCTGTAG
GCTCGCCCGTATCCATTGGCCCCGTTTACAGCCAAAGTCCGCACATTCCA
GGTTGCTACCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCGCGCG
CTGCTCTCTTAGCTAGCCTACGCGCCGCCCGACCCCTCCTTTTCCTCCAT
CTTCCTCTCTTTTTTTGTTTTTTACTATTTTCTTGCGAACACTCGGGCTA
ACGTGACAGTTACCCCGGTTCTTGCCTTGTTTCCCATTGAGTTGTCTTCT
TGTCCCGGAGCGGTGTGGCCCTCCATCTCTGGACTCTCTCCTTTCCTCTC
TCTGGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGC
TCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAG
TCTCATTGTGCAGCTACCAAAGCTGGCGGCTATGGAGCTACCCCGATCTC
ACGACAGCAGTAACTCCCAACCCCAAACTCAGGATCCCCCTC

protein sequence of EsuBft343_25a-0001

>EsuBft343_25 ID=EsuBft343_25|Name=EsuBft343_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MPVSTAVATPSHAALRIFHVAKFQLPLIAGRASRRLVRACSSAARVSGVS
HHSCVRRLRDSSPRVVRAASRRALVKSVANSAAVVVRSSSRVSRLRRNRL
VTAHRAASNCNSRRLNCFCFGLVRTARLWASLPPRLTVATTILWSESALT
GRTGWGMTTTLDTRP

mRNA from alignment at Scaffold_246:452183..454348+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft343_25a-0001 ID=EsuBft343_25a-0001|Name=EsuBft343_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2166bp|location=Sequence derived from alignment at Scaffold_246:452183..454348+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTC
GAGCTCAGTCACATATCCGTCCAGGTGGGCATAAATGCCCGTTTCGACTG
CTGTAGCCACTCCCTCACACGCTGCTTTGAGAATCTTCCACGTCGCTAAG
TTCCAGTTGCCCCTCATCGCCGGGCGCGCTTCCCGACGTTTGGTAAGGGC
CTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACACCACTCCTGCGTGC
GGCGTCTCCGCGATTCCTCCCCCAGGGTCGTACGCGCTGCGTCGAGGAGA
GCATTGGTAAAGTCGGTCGCCAATTCCGCGGCGGTGGTTGTTCGCTCGTC
CAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGCACACCGTG
CTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTTCTGTTTCGGTTTA
GTCCGGACTGCACTGTTGTGGGCAAGCCTGCCACCGAGGTTGACAGTGGC
TACTACCATATTGTGGTCTGAGTCTTTNTGGTAAAGTCGGTCGCCAATTC
CGCGGCGGTGGTTGTTCGCTCGTCCAGAGTTGTGTCGAGGTTGAGGAGGA
ACCGATTAGTCACCGCACACCGTGCTGCTTCGAACTGCAATTCCCGTCGG
TTGAATTGCTTCTGTTTCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAG
CCTGCCACCGAGGTTGACGGTGGCTACTACCATATTGTGGTCTGAGTCTG
CTTTGACTGGGCGAACCGGCTGGGGGATGACGACCACGTTAGATACTCGG
CCGTGATGTGCCTGCCTTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTT
TCCCGACACACCGTTGTATGTGTGCCATATTCCGCCCTTGCGTGTCTCAA
AGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGCGAAGTTCAACAGT
AGCATGCCATTGTCGTTGAGCTCATCACGCCCGTACATTCCTATTACCCT
TCCGTCCCCTCCGTCCAACCTCTCTCCCGTCCGCGCGTTGGCATCCAGTA
GGACATACACACATTCTTTGGAAGGGATCCTCCGCACGAGACTGTCAAGT
TTTCCCCAGAACACGCGCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGC
ATACGCGGCTACGAAGTTGACCGCTCCACGGTGGCCTGCCAACAGAAACC
TCATGGCCATTAGGCGTTCGTCGATAAACTCCGTAGTGAACGTGGATGTC
TTGCACAGGGACTCTTTGACGGCTATCCCCACACCATGGACTCCACCAGT
CTCCGTGCCACAGCAGAACACCCGGAAACCCGCTGCTGCAAATTCCGTTC
GACCTGCCCTCAGTGTCTCCTGCATTCCTACTACCGATACGTCTAGTCTC
GCTGCCTCGTGAAGAACGCTGTAGGCTCGCCCGTATCCATTGGCCCCGTT
TACAGCCAAAGTCCGCACATTCCAGGTTGCTACCCTAAGAAGTTGACCCT
GCTGTCTCTTTCGCGCGGCGCGCGCTGCTCTCTTAGCTAGCCTACGCGCC
GCCCGACCCCTCCTTTTCCTCCATCTTCCTCTCTTTTTTTGTTTTTTACT
ATTTTCTTGCGAACACTCGGGCTAACGTGACAGTTACCCCGGTTCTTGCC
TTGTTTCCCATTGAGTTGTCTTCTTGTCCCGGAGCGGTGTGGCCCTCCAT
CTCTGGACTCTCTCCTTTCCTCTCTCTGGGGCATACCCCCACGGCGTGCG
GCCACTCCGCCACCCTCACCGTGCTCTCTGCTGCTGCATAGCCCCGGTGT
CCAAGCCGGGGCGTCAGGATCCAGTCTCATTGTGCAGCTACCAAAGCTGG
CGGCTATGGAGCTACCCCGATCTCACGACAGCAGTAACTCCCAACCCCAA
ACTCAGGATCCCCCTC

Coding sequence (CDS) from alignment at Scaffold_246:452183..454348+

>EsuBft343_25a-0001 ID=EsuBft343_25a-0001|Name=EsuBft343_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_246:452183..454348+ (Ectocarpus subulatus male Bft15b)
ATGCCCGTTTCGACTGCTGTAGCCACTCCCTCACACGCTGCTTTGAGAAT
CTTCCACGTCGCTAAGTTCCAGTTGCCCCTCATCGCCGGGCGCGCTTCCC
GACGTTTGGTAAGGGCCTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCA
CACCACTCCTGCGTGCGGCGTCTCCGCGATTCCTCCCCCAGGGTCGTACG
CGCTGCGTCGAGGAGAGCATTGGTAAAGTCGGTCGCCAATTCCGCGGCGG
TGGTTGTTCGCTCGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTA
GTCACCGCACACCGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTG
CTTCTGTTTCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGCCAC
CGAGGTTGACGGTGGCTACTACCATATTGTGGTCTGAGTCTGCTTTGACT
GGGCGAACCGGCTGGGGGATGACGACCACGTTAGATACTCGGCCGTGA