EsuBft343_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft343_22a-0001
Unique Name	EsuBft343_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:429650..430672 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	698440.XP_007297771.1
ProteomeId	EsuBft343_22
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	4751\|Fungi
Length	912
Hectar predicted targeting category	other localisation
Evalue	1.15e-45
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	retrotransposon
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft343_22a	EsuBft343_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 429650..430672 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_22a-0001-exon	agat-exon-30108	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 429650..429680 +
EsuBft343_22a-0001-exon	EsuBft343_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 429731..429942 +
EsuBft343_22a-0001-exon	agat-exon-30109	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 430004..430672 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_22a-0001-cds	EsuBft343_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 429650..429680 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_22a-0001	EsuBft343_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 429650..430672 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:429650..430672+
coding sequence from alignment at Scaffold_246:429650..430672+

spliced messenger RNA

>EsuBft343_22a-0001 ID=EsuBft343_22a-0001|Name=EsuBft343_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=912bp|location=Sequence derived from alignment at Scaffold_246:429650..430672+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAAGGACTCAATCCGACCCCTGCGTACGACATTCTTATCACAGG
AGGAGACCAGCAGCTCGTGGACCAGAAGAAGAAGGAGCTCACGGATCGAT
TCGAGATGACCGACATGGGAGAGGTAAAGCGGATCCTCGGGATCGACGTG
CAGCGAGACTACGAGCAAGGAACCCTGGCCATTTCACAGGAGCACTACGT
GAACACACTTCTGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGACCCAC
GGACAAGAAAATCTACAGGAAGCATCCTCTACCTGGCCCAGTGCACGCGA
TTCGACCTCTCCTACGCTGCCCTACAACTTTCCAAGGCCTGCAGCAACCC
AGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGGG
GTAATCCAGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCG
GCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTAC
CACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGA
AGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCA
CTTAGCTACTCAGCCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGA
ACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCG
GAGCGCTGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCAC
GTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAAT
CACTCTTCACCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCA
AGTACCTCCCAAAGCACCGATTCGCCTCCATCATTCAGCAGATCAAGGAC
TTCTCGTGTTGA

protein sequence of EsuBft343_22a-0001

>EsuBft343_22 ID=EsuBft343_22|Name=EsuBft343_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=303bp
MAKGLNPTPAYDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDV
QRDYEQGTLAISQEHYVNTLLERFGMQEANPDPRTRKSTGSILYLAQCTR
FDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLA
AFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQA
LSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKH
VALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKD
FSC

mRNA from alignment at Scaffold_246:429650..430672+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft343_22a-0001 ID=EsuBft343_22a-0001|Name=EsuBft343_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1023bp|location=Sequence derived from alignment at Scaffold_246:429650..430672+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAAGGACTCAATCCGACCCCTGCGTGTACGTGTATTCCAGCGGC
AACATCATCGTGATTCTCACGGTCTACGTAGACGACATTCTTATCACAGG
AGGAGACCAGCAGCTCGTGGACCAGAAGAAGAAGGAGCTCACGGATCGAT
TCGAGATGACCGACATGGGAGAGGTAAAGCGGATCCTCGGGATCGACGTG
CAGCGAGACTACGAGCAAGGAACCCTGGCCATTTCACAGGAGCACTACGT
GAACACACTTCTGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGTGAGCA
CTCCTGGATACGGAGCGGAAATCTCCACGAATCAACCTTAGGACCAAATC
CTAGGACCCACGGACAAGAAAATCTACAGGAAGCATCCTCTACCTGGCCC
AGTGCACGCGATTCGACCTCTCCTACGCTGCCCTACAACTTTCCAAGGCC
TGCAGCAACCCAGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTGCG
ATACCTTCGGGGTAATCCAGTTCTTCCTATCGTCTACAAGAGAGGACAGT
TTCGGCTAGCGGCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACAAC
GGAAGATCTACCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATCAG
CTACGGTGCGAAGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGCCG
AGATTCAAGCACTTAGCTACTCAGCCAGAGAGGCGGTCTACATCTCAAAT
TTTATGACGGAACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAG
CGACAGCACCGGAGCGCTGACAGTGGCCGGGAATGCCATGCACTCTCAAC
GCACGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTA
CGGGGACAAATCACTCTTCACCACCGGCCCAGCGAGCACCAGTTGGCTGA
TATCGCGACCAAGTACCTCCCAAAGCACCGATTCGCCTCCATCATTCAGC
AGATCAAGGACTTCTCGTGTTGA

Coding sequence (CDS) from alignment at Scaffold_246:429650..430672+

>EsuBft343_22a-0001 ID=EsuBft343_22a-0001|Name=EsuBft343_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=912bp|location=Sequence derived from alignment at Scaffold_246:429650..430672+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAAGGACTCAATCCGACCCCTGCGTACGACATTCTTATCACAGG
AGGAGACCAGCAGCTCGTGGACCAGAAGAAGAAGGAGCTCACGGATCGAT
TCGAGATGACCGACATGGGAGAGGTAAAGCGGATCCTCGGGATCGACGTG
CAGCGAGACTACGAGCAAGGAACCCTGGCCATTTCACAGGAGCACTACGT
GAACACACTTCTGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGACCCAC
GGACAAGAAAATCTACAGGAAGCATCCTCTACCTGGCCCAGTGCACGCGA
TTCGACCTCTCCTACGCTGCCCTACAACTTTCCAAGGCCTGCAGCAACCC
AGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGGG
GTAATCCAGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCG
GCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTAC
CACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGA
AGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCA
CTTAGCTACTCAGCCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGA
ACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCG
GAGCGCTGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCAC
GTGGCCCTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAAT
CACTCTTCACCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCA
AGTACCTCCCAAAGCACCGATTCGCCTCCATCATTCAGCAGATCAAGGAC
TTCTCGTGTTGA