EsuBft343_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft343_21a-0001
Unique Name	EsuBft343_21a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:427905..429586 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4959.XP_002770268.1
ProteomeId	EsuBft343_21
Protein domains	Coil
Protein domains	IPR013103
Protein domains	IPR001584
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4751\|Fungi
Length	1682
Hectar predicted targeting category	other localisation
Evalue	1.23e-34
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota,3RTT4@4891\|Saccharomycetes,47E39@766764\|Debaryomycetaceae
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Transposable element
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft343_21a	EsuBft343_21a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 427905..429586 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_21a-0001-exon	EsuBft343_21a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 427905..429586 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_21a-0001-cds	EsuBft343_21a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 427905..429452 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_21a-0001-exon	agat-three_prime_utr-13399	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 429453..429586 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_21a-0001	EsuBft343_21	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 427905..429452 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:427905..429586+
coding sequence from alignment at Scaffold_246:427905..429586+

spliced messenger RNA

>EsuBft343_21a-0001 ID=EsuBft343_21a-0001|Name=EsuBft343_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1682bp|location=Sequence derived from alignment at Scaffold_246:427905..429586+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACCATCCGCTGCGA
CAAGGGAGGCGAGAACACCGGATCCGAATTTCGGGACTACTGCAAGAATT
CAGCTATCAAGCTCGAATACGCCGCCACCAACACCCCTCAACAAATTGGT
GTATCGGAACGGGACGGACAAACCCTGGCCGGAGTCACCCGGTGTCTTCT
GAAGGATGGAGATTTTCCGCCGTCCATGTGGGGGGAGTTAATGCTGACTG
CAGCATACCTGTTGAACAGGTCCCCACACTCAGCACTGGGAGGAGCTACG
CCATACTCGAAGTTGCACAATAAGTCACCTGATCTCTCGGGACTTCGGGT
CATTGGAGCGCGCGCCTTCGTACACCACGAGAGATACCGAAAGAAGCTGG
ACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTCGGCCTCGACAGCCAG
ACCTACCGGGTATTGAATCCATCCAACGGGGCCGTGGTCGAGAGCCGGAA
TGTGACTTTCATCGAATCTCCACCCCGCTCAGTGCCCTTCCAGTATTCCA
CTGAAGCAAACGGGTACGAGAGCGACGTGCTGAGCTTCACCTCCCTGCTG
GACAGCCCCCACTCGACGAGCGCCCTGGACTTCACGGCGCAGGACGAACT
TCTTCGGCAAGAAGTCCGGAAGATGCAGCAAGACAATCTCGCTCGGGAGG
AGCTTCGCCTAGAACTGGACGGGCACGAGGACGAACATGGACACGGGCAA
AATCTCGGCGACGGGGAAGCTCCATCACCACATCTCCCATCGACGCCAGA
TGGATCGTCATCCGAGGCCCACGCATCTAGCCCCAGTCCATCATCGTCGA
ACCCGACTGAACCGGACACTTCTGCATCAACTGGATCCTCCGGCATGCGG
CGCCTGCAAGTCACCAGAGCCAGCACGCGCGGGAAGCCCACCAGCGACGA
TCATATCGACGTCAACTTGGTTCCAGCCAATCTGGAAGTCACCATGAACG
ACCGCGGTCGAGCCCATGCTACAACGGGCCGCGTAGAGCCATCCGGTCTT
TCCTTCACTCAGCTGGCTGAGATAGCCGATCAAGCCCAGCTCCCATGCCC
TGGCGATACTGAGGATTTCGCCCACGTTGCGGAAGACCCCTTCACGGTGC
CGCGTGCTCACGCCTACGTCACGACCACTCACGAACACCACGGGATCTTG
GAGGAGACGAACCAAGCGATCAAAATTCCCAACACCTACGACGAAGCCAT
GAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGGAAATGG
ACAAGCTGCGGGAACACAACGTCTACAATTTGGTGCCCCTCAGCCGCGTT
CCCAAGGAAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAGAAACAGCT
GGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCGTCAAGAGC
CAGGACAGGACTACGGACGCAGCTACGCAGCAGTATGCCGTATCGGGAGC
ATTCGCATGACGTGCGCCATTGGCTGCCGCAACAACTGGCCCATCTAACA
ACTGGACGTTGTCGGCGCCTTCCTGAACGCCCTCTGCGACAGAGATGTGT
ACGTCAGACCCGCCCCCGGTATATCCGCCAAGAACTCCGCGACGGGAGAA
CCCATGGTGTACAAACTAGAACGGAGCCTCTG

protein sequence of EsuBft343_21a-0001

>EsuBft343_21 ID=EsuBft343_21|Name=EsuBft343_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=515bp
MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIG
VSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGAT
PYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQ
TYRVLNPSNGAVVESRNVTFIESPPRSVPFQYSTEANGYESDVLSFTSLL
DSPHSTSALDFTAQDELLRQEVRKMQQDNLAREELRLELDGHEDEHGHGQ
NLGDGEAPSPHLPSTPDGSSSEAHASSPSPSSSNPTEPDTSASTGSSGMR
RLQVTRASTRGKPTSDDHIDVNLVPANLEVTMNDRGRAHATTGRVEPSGL
SFTQLAEIADQAQLPCPGDTEDFAHVAEDPFTVPRAHAYVTTTHEHHGIL
EETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDKLREHNVYNLVPLSRV
PKEEKILGTKFVFKKQLDGRFKARLVVGGHRQEPGQDYGRSYAAVCRIGS
IRMTCAIGCRNNWPI

mRNA from alignment at Scaffold_246:427905..429586+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft343_21a-0001 ID=EsuBft343_21a-0001|Name=EsuBft343_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1682bp|location=Sequence derived from alignment at Scaffold_246:427905..429586+ (Ectocarpus subulatus male Bft15b)
ATGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACCATCCGCTGCGA
CAAGGGAGGCGAGAACACCGGATCCGAATTTCGGGACTACTGCAAGAATT
CAGCTATCAAGCTCGAATACGCCGCCACCAACACCCCTCAACAAATTGGT
GTATCGGAACGGGACGGACAAACCCTGGCCGGAGTCACCCGGTGTCTTCT
GAAGGATGGAGATTTTCCGCCGTCCATGTGGGGGGAGTTAATGCTGACTG
CAGCATACCTGTTGAACAGGTCCCCACACTCAGCACTGGGAGGAGCTACG
CCATACTCGAAGTTGCACAATAAGTCACCTGATCTCTCGGGACTTCGGGT
CATTGGAGCGCGCGCCTTCGTACACCACGAGAGATACCGAAAGAAGCTGG
ACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTCGGCCTCGACAGCCAG
ACCTACCGGGTATTGAATCCATCCAACGGGGCCGTGGTCGAGAGCCGGAA
TGTGACTTTCATCGAATCTCCACCCCGCTCAGTGCCCTTCCAGTATTCCA
CTGAAGCAAACGGGTACGAGAGCGACGTGCTGAGCTTCACCTCCCTGCTG
GACAGCCCCCACTCGACGAGCGCCCTGGACTTCACGGCGCAGGACGAACT
TCTTCGGCAAGAAGTCCGGAAGATGCAGCAAGACAATCTCGCTCGGGAGG
AGCTTCGCCTAGAACTGGACGGGCACGAGGACGAACATGGACACGGGCAA
AATCTCGGCGACGGGGAAGCTCCATCACCACATCTCCCATCGACGCCAGA
TGGATCGTCATCCGAGGCCCACGCATCTAGCCCCAGTCCATCATCGTCGA
ACCCGACTGAACCGGACACTTCTGCATCAACTGGATCCTCCGGCATGCGG
CGCCTGCAAGTCACCAGAGCCAGCACGCGCGGGAAGCCCACCAGCGACGA
TCATATCGACGTCAACTTGGTTCCAGCCAATCTGGAAGTCACCATGAACG
ACCGCGGTCGAGCCCATGCTACAACGGGCCGCGTAGAGCCATCCGGTCTT
TCCTTCACTCAGCTGGCTGAGATAGCCGATCAAGCCCAGCTCCCATGCCC
TGGCGATACTGAGGATTTCGCCCACGTTGCGGAAGACCCCTTCACGGTGC
CGCGTGCTCACGCCTACGTCACGACCACTCACGAACACCACGGGATCTTG
GAGGAGACGAACCAAGCGATCAAAATTCCCAACACCTACGACGAAGCCAT
GAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGGAAATGG
ACAAGCTGCGGGAACACAACGTCTACAATTTGGTGCCCCTCAGCCGCGTT
CCCAAGGAAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAGAAACAGCT
GGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCGTCAAGAGC
CAGGACAGGACTACGGACGCAGCTACGCAGCAGTATGCCGTATCGGGAGC
ATTCGCATGACGTGCGCCATTGGCTGCCGCAACAACTGGCCCATCTAACA
ACTGGACGTTGTCGGCGCCTTCCTGAACGCCCTCTGCGACAGAGATGTGT
ACGTCAGACCCGCCCCCGGTATATCCGCCAAGAACTCCGCGACGGGAGAA
CCCATGGTGTACAAACTAGAACGGAGCCTCTG

Coding sequence (CDS) from alignment at Scaffold_246:427905..429586+

>EsuBft343_21a-0001 ID=EsuBft343_21a-0001|Name=EsuBft343_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1548bp|location=Sequence derived from alignment at Scaffold_246:427905..429586+ (Ectocarpus subulatus male Bft15b)
ATGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACCATCCGCTGCGA
CAAGGGAGGCGAGAACACCGGATCCGAATTTCGGGACTACTGCAAGAATT
CAGCTATCAAGCTCGAATACGCCGCCACCAACACCCCTCAACAAATTGGT
GTATCGGAACGGGACGGACAAACCCTGGCCGGAGTCACCCGGTGTCTTCT
GAAGGATGGAGATTTTCCGCCGTCCATGTGGGGGGAGTTAATGCTGACTG
CAGCATACCTGTTGAACAGGTCCCCACACTCAGCACTGGGAGGAGCTACG
CCATACTCGAAGTTGCACAATAAGTCACCTGATCTCTCGGGACTTCGGGT
CATTGGAGCGCGCGCCTTCGTACACCACGAGAGATACCGAAAGAAGCTGG
ACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTCGGCCTCGACAGCCAG
ACCTACCGGGTATTGAATCCATCCAACGGGGCCGTGGTCGAGAGCCGGAA
TGTGACTTTCATCGAATCTCCACCCCGCTCAGTGCCCTTCCAGTATTCCA
CTGAAGCAAACGGGTACGAGAGCGACGTGCTGAGCTTCACCTCCCTGCTG
GACAGCCCCCACTCGACGAGCGCCCTGGACTTCACGGCGCAGGACGAACT
TCTTCGGCAAGAAGTCCGGAAGATGCAGCAAGACAATCTCGCTCGGGAGG
AGCTTCGCCTAGAACTGGACGGGCACGAGGACGAACATGGACACGGGCAA
AATCTCGGCGACGGGGAAGCTCCATCACCACATCTCCCATCGACGCCAGA
TGGATCGTCATCCGAGGCCCACGCATCTAGCCCCAGTCCATCATCGTCGA
ACCCGACTGAACCGGACACTTCTGCATCAACTGGATCCTCCGGCATGCGG
CGCCTGCAAGTCACCAGAGCCAGCACGCGCGGGAAGCCCACCAGCGACGA
TCATATCGACGTCAACTTGGTTCCAGCCAATCTGGAAGTCACCATGAACG
ACCGCGGTCGAGCCCATGCTACAACGGGCCGCGTAGAGCCATCCGGTCTT
TCCTTCACTCAGCTGGCTGAGATAGCCGATCAAGCCCAGCTCCCATGCCC
TGGCGATACTGAGGATTTCGCCCACGTTGCGGAAGACCCCTTCACGGTGC
CGCGTGCTCACGCCTACGTCACGACCACTCACGAACACCACGGGATCTTG
GAGGAGACGAACCAAGCGATCAAAATTCCCAACACCTACGACGAAGCCAT
GAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGGAAATGG
ACAAGCTGCGGGAACACAACGTCTACAATTTGGTGCCCCTCAGCCGCGTT
CCCAAGGAAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAGAAACAGCT
GGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCGTCAAGAGC
CAGGACAGGACTACGGACGCAGCTACGCAGCAGTATGCCGTATCGGGAGC
ATTCGCATGACGTGCGCCATTGGCTGCCGCAACAACTGGCCCATCTAA