EsuBft343_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft343_20a-0001
Unique NameEsuBft343_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:425170..427513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft343_20
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length207
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft343_20aEsuBft343_20aEctocarpus subulatus male Bft15bgeneScaffold_246 425170..427513 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_20a-0001-exonEsuBft343_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 425170..426444 -
EsuBft343_20a-0001-exonagat-exon-30107Ectocarpus subulatus male Bft15bexonScaffold_246 426718..427513 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_20a-0001-exonagat-three_prime_utr-13397Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 425170..426444 -
EsuBft343_20a-0001-exonagat-three_prime_utr-13398Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 426718..427345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_20a-0001-cdsEsuBft343_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 427346..427513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_20a-0001EsuBft343_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 427346..427513 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft343_20a-0001 ID=EsuBft343_20a-0001|Name=EsuBft343_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2071bp|location=Sequence derived from alignment at Scaffold_246:425170..427513- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTTCTGAACGTGAAGTCGAGGGTGCACATGCCTTGGTCTCGCG
GATCTTGTGTGAGTGGAATTACCTTGTTGCCGCTGCGACGCACATGTTGT
ACGTGTGCACCGCCTCGGTCGTGTCAGATTTCTTGCGAAGCAGGTACACT
TCTTTCATCTTCGTGTAGTCGTCGGTGATCTTGCACGCGTACGCGAAGGA
ACCTCCTTTATATTTCGCGGGTGGATTAACAGGCCCCATGTTGTCGATGA
CCACAAGCTGTCCAGGCCGTGATAGTTCGCGAGTCGATTGCTTCGGGTGG
GGGGACTGCTTGTGTTTCGCGATCTGGCAGACCCGGCAAGGGGAGAGACT
GTCGCGATAGTCCACCCCGGTACCCGTGTCCTTCCGAAGGATGTCCAGGC
TCCGAGCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTCCGCGCTCACT
AGCGTAAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTTCTGGTG
GGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGCTCGAACGTGA
TGTCGAGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATC
ACCTTGTCTTGGATAGTGAGGTGCGGAGTGCTCTCTTCGACGACGCAGCG
CAATCCCTTTTTCAGGAGGGAGGTGGGAGAAAAAATGTTGCGACCAAGTC
CAGGAACGATGAGTCCCTGAATCCGCACGCGCAATTGCTGTCCTCGATTG
TCCTTGACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCTTTGAGTTTTTC
GCTGGGTGTAATCGTGGAGGTTTCCGTCGGGGATGAGGCGATTGTCAAAC
ATGGTCTCCGATGCTCCCGTGTCTACCAGCAGGCCTACCCCGGTGGAGCT
CGCGGCGAAGTTGCGTCCTGAGATGCGGGAACACGTGCCGAACATGAAGC
CGCTGTCAAAGGCGTCCTCGTCCCGGGTGAAGTCGACAACTGCCACTTCA
TTGTTTGAGTCGTGCTTGTTGGACGCCGACGAGCAGTGAGTGCAGTTGGA
GCACGCGGTGAATGCTTTACTTGAGTCCTTGGTGTCTTCCGGGCGCTTTC
CTCCTTGCTGGTAGCATTCCTCGTCCGAGTGAGACGTGGTGTTGTGCTTG
GAGCACCACTTGGTAGCTCCGGCGGGCTTCGTTTTCTTCTTCGCCCTGTT
CTTGATCTTGGGGCAGTTCCTCCTGATGTGCCCCGGCTCGTAGCAGCTGT
GGCAGATGATGTCAGACGCGGTCGTTGCCATGGCAAATCCTCGACCAGCT
ATGCGTCCCTTTCATCTCTTGCGCGATTGTTCGTCCAAGAAGATGTTGCG
CATGGTGGATTGCATGTCCAGGACGTTGAAGGTTGGGTCTCTGAACACCA
TCAGTTTGACGTCCTTGTATTCGTCGGAGAAGCCCTGTACGCAGATGTCC
TTGAAGCGGCGGTCGGAGATGGGTTCTCCCATCTTATCCAGCTGGGTGCG
AAGTAGGTGCTTCTGGTTGAAGTAGTCGTCGGGATTTTCACCAGGGTTCA
TGGGGTTGTTCTCCAGCTCCTCCATCTTGGCCCTGATGACCTCGTCCGTT
ACCCTGTCATAGTTGTTGCAGAGCTCCTCGAAGGCAGCTTGTCCGTCGCC
GCTGATGCCAGTGTCGTCTTCGTGCTTCTGTATCGACAAGGCGGCTGGAA
GTTCCACTAGGAGGAAAAGAATGGCGTAGAGATCTTCGTTTGCACTTGTG
TAGGAGTCGAAGGCCGCTGTGCCTGCGGGATCTGGCTTCCTTTGTTTCTT
CAGCAGTGGCAGGATGTCCTTCCTGGTCACACCTAACACCACGCAGAATT
TCCTCATCCATGTCTTGAACTCAGCTGGGTCCTTTCCGTCGAATTTCTTG
AGGCCTTTGATCACGGTTGCCAGGTTCGTAGAACTATCGCTGGCGAACGC
GCTTCCACCTCCTGTGTTGCTCGTTGCAGTATCCATTGCTCGTTCCAGCT
TTATTTTCTTCGTCTTGATAAAAGTACTTCCTGCTGTAGGAGTAAGGTTG
CTCGTGGTACTACTGCCTGTA
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protein sequence of EsuBft343_20a-0001

>EsuBft343_20 ID=EsuBft343_20|Name=EsuBft343_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MTASEREVEGAHALVSRILCEWNYLVAAATHMLYVCTASVVSDFLRSRYT
SFIFV
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mRNA from alignment at Scaffold_246:425170..427513-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft343_20a-0001 ID=EsuBft343_20a-0001|Name=EsuBft343_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2344bp|location=Sequence derived from alignment at Scaffold_246:425170..427513- (Ectocarpus subulatus male Bft15b)
ATGACTGCTTCTGAACGTGAAGTCGAGGGTGCACATGCCTTGGTCTCGCG
GATCTTGTGTGAGTGGAATTACCTTGTTGCCGCTGCGACGCACATGTTGT
ACGTGTGCACCGCCTCGGTCGTGTCAGATTTCTTGCGAAGCAGGTACACT
TCTTTCATCTTCGTGTAGTCGTCGGTGATCTTGCACGCGTACGCGAAGGA
ACCTCCTTTATATTTCGCGGGTGGATTAACAGGCCCCATGTTGTCGATGA
CCACAAGCTGTCCAGGCCGTGATAGTTCGCGAGTCGATTGCTTCGGGTGG
GGGGACTGCTTGTGTTTCGCGATCTGGCAGACCCGGCAAGGGGAGAGACT
GTCGCGATAGTCCACCCCGGTACCCGTGTCCTTCCGAAGGATGTCCAGGC
TCCGAGCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTCCGCGCTCACT
AGCGTAAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTTCTGGTG
GGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGCTCGAACGTGA
TGTCGAGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATC
ACCTTGTCTTGGATAGTGAGGTGCGGAGTGCTCTCTTCGACGACGCAGCG
CAATCCCTTTTTCAGGAGGGAGGTGGGAGAAAAAATGTTGCGACCAAGTC
CAGGAACGATGAGTCCCTGAATCCGCACGCGCAATTGCTGTCCTCGATTG
TCCTTGACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCTTTGAGTTGTCT
TTCTCCGGCCACGTCCACGATCTTTGGAGAGTTTCGCTGGGTGTAATCGT
GGAGGTTTCCGTCGGGGATGAGGCGATTGTCAAACATGGTCTCCGATGCT
CCCGTGTCTACCAGCAGGCCCACCCCGGTGGAGCTCGCGGCGAAGTTGCG
CNCCCTGAATCCACACGCGCAATTGCTGTCCTCGATTGTCCTTGACGGTG
CAATGTAGGATGCCCGTGGCCGTGCCTTTGAGATGTCTTTCTCCGGCCAC
GTCCACGATCTTTGGATAGTTTCGCTGGGTGTAATCGTGGAGGTTTCCGT
CGGGGATGAGGCGATTGTCAAACATGGTCTCCGATGCTCCCGTGTCTACC
AGCAGGCCTACCCCGGTGGAGCTCGCGGCGAAGTTGCGTCCTGAGATGCG
GGAACACGTGCCGAACATGAAGCCGCTGTCAAAGGCGTCCTCGTCCCGGG
TGAAGTCGACAACTGCCACTTCATTGTTTGAGTCGTGCTTGTTGGACGCC
GACGAGCAGTGAGTGCAGTTGGAGCACGCGGTGAATGCTTTACTTGAGTC
CTTGGTGTCTTCCGGGCGCTTTCCTCCTTGCTGGTAGCATTCCTCGTCCG
AGTGAGACGTGGTGTTGTGCTTGGAGCACCACTTGGTAGCTCCGGCGGGC
TTCGTTTTCTTCTTCGCCCTGTTCTTGATCTTGGGGCAGTTCCTCCTGAT
GTGCCCCGGCTCGTAGCAGCTGTGGCAGATGATGTCAGACGCGGTCGTTG
CCATGGCAAATCCTCGACCAGCTATGCGTCCCTTTCATCTCTTGCGCGAT
TGTTCGTCCAAGAAGATGTTGCGCATGGTGGATTGCATGTCCAGGACGTT
GAAGGTTGGGTCTCTGAACACCATCAGTTTGACGTCCTTGTATTCGTCGG
AGAAGCCCTGTACGCAGATGTCCTTGAAGCGGCGGTCGGAGATGGGTTCT
CCCATCTTATCCAGCTGGGTGCGAAGTAGGTGCTTCTGGTTGAAGTAGTC
GTCGGGATTTTCACCAGGGTTCATGGGGTTGTTCTCCAGCTCCTCCATCT
TGGCCCTGATGACCTCGTCCGTTACCCTGTCATAGTTGTTGCAGAGCTCC
TCGAAGGCAGCTTGTCCGTCGCCGCTGATGCCAGTGTCGTCTTCGTGCTT
CTGTATCGACAAGGCGGCTGGAAGTTCCACTAGGAGGAAAAGAATGGCGT
AGAGATCTTCGTTTGCACTTGTGTAGGAGTCGAAGGCCGCTGTGCCTGCG
GGATCTGGCTTCCTTTGTTTCTTCAGCAGTGGCAGGATGTCCTTCCTGGT
CACACCTAACACCACGCAGAATTTCCTCATCCATGTCTTGAACTCAGCTG
GGTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATCACGGTTGCCAGGTTC
GTAGAACTATCGCTGGCGAACGCGCTTCCACCTCCTGTGTTGCTCGTTGC
AGTATCCATTGCTCGTTCCAGCTTTATTTTCTTCGTCTTGATAAAAGTAC
TTCCTGCTGTAGGAGTAAGGTTGCTCGTGGTACTACTGCCTGTA
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Coding sequence (CDS) from alignment at Scaffold_246:425170..427513-

>EsuBft343_20a-0001 ID=EsuBft343_20a-0001|Name=EsuBft343_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_246:425170..427513- (Ectocarpus subulatus male Bft15b)
ATGACTGCTTCTGAACGTGAAGTCGAGGGTGCACATGCCTTGGTCTCGCG
GATCTTGTGTGAGTGGAATTACCTTGTTGCCGCTGCGACGCACATGTTGT
ACGTGTGCACCGCCTCGGTCGTGTCAGATTTCTTGCGAAGCAGGTACACT
TCTTTCATCTTCGTGTAG
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