EsuBft343_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft343_19a-0001
Unique NameEsuBft343_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:410736..411612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft343_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length58
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19aEsuBft343_19aEctocarpus subulatus male Bft15bgeneScaffold_246 410736..411612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19a-0001EsuBft343_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 410964..411119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19a-0001-exonEsuBft343_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 410736..411296 +
EsuBft343_19a-0001-exonagat-exon-30106Ectocarpus subulatus male Bft15bexonScaffold_246 411585..411612 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19a-0001-exonagat-five_prime_utr-8493Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 410736..410963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19a-0001-cdsEsuBft343_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 410964..411119 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_19a-0001-exonagat-three_prime_utr-13395Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 411120..411296 +
EsuBft343_19a-0001-exonagat-three_prime_utr-13396Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 411585..411612 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft343_19a-0001 ID=EsuBft343_19a-0001|Name=EsuBft343_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=589bp|location=Sequence derived from alignment at Scaffold_246:410736..411612+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGAACCTGGTCCATTGTACCAATATCACTAGAGGACACCCTATAGCAGC
GGGGGGGAGTGTTGGCGCGCTCAAAACTTCTTCTGTGGTGGTGGTATCGA
GTGTCGTTGTAGTGGCCCACAATCTCCGCAAATCTCCGCAAGTTAGATCG
ACACCCAGTGTCTTGTACTGCTTGTGCTCGCCGCCACTGAACCCAATCTT
CTGAACTGCAGGTTTACAGCAGTAGCTGATGCCACCAGCTACTGCTGACA
ACCCGCAGTTGAGGGGTTTGCGGTCCGTGGTGGTGAGCACCGCTGTGACA
AGTGTTGGGTTCCGCTTGGTTCCGGCGCAGATTTCGGACCGTTTTCAGAG
GCTGCTGCGACCTTCGATATTTCAGCCCCAGTAGTATACCTGAACGTGCC
AGCACGCACGACGCCTCTTGATGATATCCTCTACTGATACTAGCACAACG
GACCAGGTTCCTCCGGCGGGAAGGTTGTTTTCTTTCTTTGTGCTGTTATA
AAGTATTAGAAAAGAGCCAGCGTCAAAATCCCTTGTCTGGGTACCCTTAA
ATACAGACGCGGGTAGCCGTAAAGAAAGGTGGCGGGTAC
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protein sequence of EsuBft343_19a-0001

>EsuBft343_19 ID=EsuBft343_19|Name=EsuBft343_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MPPATADNPQLRGLRSVVVSTAVTSVGFRLVPAQISDRFQRLLRPSIFQP
Q
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mRNA from alignment at Scaffold_246:410736..411612+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft343_19a-0001 ID=EsuBft343_19a-0001|Name=EsuBft343_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=877bp|location=Sequence derived from alignment at Scaffold_246:410736..411612+ (Ectocarpus subulatus male Bft15b)
AGGAACCTGGTCCATTGTACCAATATCACTAGAGGACACCCTATAGCAGC
GGGGGGGAGTGTTGGCGCGCTCAAAACTTCTTCTGTGGTGGTGGTATCGA
GTGTCGTTGTAGTGGCCCACAATCTCCGCAAATCTCCGCAAGTTAGATCG
ACACCCAGTGTCTTGTACTGCTTGTGCTCGCCGCCACTGAACCCAATCTT
CTGAACTGCAGGTTTACAGCAGTAGCTGATGCCACCAGCTACTGCTGACA
ACCCGCAGTTGAGGGGTTTGCGGTCCGTGGTGGTGAGCACCGCTGTGACA
AGTGTTGGGTTCCGCTTGGTTCCGGCGCAGATTTCGGACCGTTTTCAGAG
GCTGCTGCGACCTTCGATATTTCAGCCCCAGTAGTATACCTGAACGTGCC
AGCACGCACGACGCCTCTTGATGATATCCTCTACTGATACTAGCACAACG
GACCAGGTTCCTCCGGCGGGAAGGTTGTTTTCTTTCTTTGTGCTGTTATA
AAGTATTAGAAAAGAGCCAGCGTCAAAATCCCTTGTCTGGGTACCCTTAA
ATACAGACGCGGTATCACCTGAAGAAATGACGCATCTGAGCAAACATGTT
GAACCATTTAGAGGTCCACAAGGGTCACGTTCGGCGTGATTGCCCTCCCT
GCTCTATCTAACGCCCGTCGTAGCTACATTACGACCTTCACTGCTCTTCG
AATGCCGGACCTCCTCCCTGCTCTACGGCGCGCTCCCCTCAAGGAAAGCC
CACCACCCTACCACCGCACCCGCATCTTCACTGTGCGTGTCCAACGGCAT
TCATGCGGCGCGTCTTTGGTCTACATGTAGTCTAGCTCGAAATGCACAGG
GTAGCCGTAAAGAAAGGTGGCGGGTAC
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Coding sequence (CDS) from alignment at Scaffold_246:410736..411612+

>EsuBft343_19a-0001 ID=EsuBft343_19a-0001|Name=EsuBft343_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_246:410736..411612+ (Ectocarpus subulatus male Bft15b)
ATGCCACCAGCTACTGCTGACAACCCGCAGTTGAGGGGTTTGCGGTCCGT
GGTGGTGAGCACCGCTGTGACAAGTGTTGGGTTCCGCTTGGTTCCGGCGC
AGATTTCGGACCGTTTTCAGAGGCTGCTGCGACCTTCGATATTTCAGCCC
CAGTAG
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