EsuBft343_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft343_16a-0001
Unique NameEsuBft343_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:371268..374404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft343_16
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length280
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16aEsuBft343_16aEctocarpus subulatus male Bft15bgeneScaffold_246 371268..374404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16a-0001EsuBft343_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 372636..374221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16a-0001-exonagat-exon-30085Ectocarpus subulatus male Bft15bexonScaffold_246 371268..371545 -
EsuBft343_16a-0001-exonEsuBft343_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 371617..372434 -
EsuBft343_16a-0001-exonagat-exon-30084Ectocarpus subulatus male Bft15bexonScaffold_246 372607..372804 -
EsuBft343_16a-0001-exonagat-exon-30086Ectocarpus subulatus male Bft15bexonScaffold_246 372897..374404 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16a-0001-exonagat-three_prime_utr-13380Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 371268..371545 -
EsuBft343_16a-0001-exonagat-three_prime_utr-13381Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 371617..372434 -
EsuBft343_16a-0001-exonagat-three_prime_utr-13382Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 372607..372635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16a-0001-cdsEsuBft343_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 372636..372804 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft343_16a-0001-exonagat-five_prime_utr-8490Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 374222..374404 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft343_16a-0001 ID=EsuBft343_16a-0001|Name=EsuBft343_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2802bp|location=Sequence derived from alignment at Scaffold_246:371268..374404- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGACACCAGCAGCAGGTGACGAGAGGAGTGCAGCAGCAGAGCAGCCGC
CGCACCCACGTCCTCACAGGGCACAGCCGGTACCAGCATCAGCAGCAGCT
GGTGCCCAACGAACGCCCACGCCGTCCCGCTGCTCCCCCTCCCGAGCAGC
AGCACCAATGCAGCTGCTGTGGAGAGCAAGGTCATGTACATCAGTGTTGC
AAGTTCAACCTCGCCCGCGGACCGTTTCAGCAGCGGAGGAACGGTGATTT
TGGCGGCGGGTCTGTGTTCCAGCAGCAGCAGCAACAACAGCGGCAGAAGC
CAGGCANCCGCTGCTCCCCCTCCCGAGCAGCAGCACCAATGCAGCTGCTG
TGGAGAGCAAGGTCATGTACATCAGTGTTGCAAGTTCAACCTCGCCCGCG
GACCGTTTCAGCAGCGGAGGAACGGTGATTTTGGCGGCGGGTCTGTGTTC
CAGCAGCAGCAGCAACAACAGCGGCAGAAGCCAGGCATGGTGTATGGCAG
CACTGGTGGATTTCAGCAGCAGCCGCGGCAACAACAGCTGGCGGCCGGCT
CCACCCATGGTGTGGTTGGACAGTTGAGTGGTGGGGTGGTTGTTGGCGAG
AAGGGGGGGGGTGCTGCTGCCGGTTCGTTTGTGGCGTCGTTGCTGGTAAA
AGCCCCCGCCAACGTATCTTCTCCCAACGCAGTTACGCACCCCGCCACTC
ATTCTCCCCCGCGACCCACGACATCACGTGTAGCACCGGCAGTAGCGCGG
AAACGCGCAGAACTGGATCTCATGGAGGCCGGGTACAGTAAAAGTGTAGC
AATGCGGCAGATTCCCGGACCATACAGCGTTATTGTAGTTTCGCCATCCG
CGGCATCGCAACAACCCAAGCAGTCACCGTCGCAGCAGCAGCAGCAGCAG
CAGCAACAGCCAGCAGCCTCACTTGTGCCATCACCCACAGCAAACCATGC
CGATGAGATCCGTCCTGCTGCCCCATCTTCAACGGTTGGGATTTGTGGAA
CGGCATCCGCACCGGCGGTCGCAACGGCGGCTTCGGTCAGAGCTGCGGTG
GCAGGAGTAACGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAAC
GGCGGCGGTTGGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGG
CGCCGGGCAGTCAAGATACGTGCGCCGACAGCGGCGGCCTGACCTACAGC
AGCGGTGGAGACGACGACATCTACGGTTTCGAGAGGGGCGCGTCGTACCC
TTTTGACCCGGGAGGATTATTTGCGCAGGAGGTGCGTGAAGAGGGAGATC
ACAACAGCGGTGGTAAGGAGGACCGGAGCAGCGGTGGCCGCAGCAGCAGC
AGCGGCGACGGCGGAGACGGCGCGGCCTGGCATGAAGCGTCAACGCATCC
CTTTGACAGAGGGAAGCGGTCCCGGTGGAGGAGAGCGACCAGGGGGGCCG
TGCTGGGAGTGGACCTCCCATTCGATCGAGGTAGAGATGCATGGGCACAT
GCCGGGGGCACCATCATCGGAACCGGCGGCGGCGCGGACAGCTTCGGCGG
ACAGCTTCGGCCGAGCCCCTTCGCCGACAACACCATGATCAGGAGCGGCG
ACAGCAGGACGCGCCGCGACATGAGTGGTGGCTTCGGCCAGAGCTCCGGG
GGGCGGTGGCAACGGCGACGGCGGTGACGGTAGTAGCGGCCGCAGCAGCA
GCAGCGCAATGGATGGTCTGGTTGGGGCGGGCACGTTCGAGCCGGCAGGA
GGGCTCTAGCAACGAGGAACGAACGTCATCTCTGCCAAATGGGTCTACAC
GTGGAAACCTGATGAATTCGGTGATGTGTTGCGTGCAAAGGCTCGGCTTG
TCGCTAGGGGTTTCGGTCAGCGTGAAGGTTTTGACTATTTTGAGACTTTT
TCCCCGTGCCCTACCCATCCGAGTATTCGCCCCTTGTCTGCTATCGCGTG
TGAAATGGGTTGGGACGTGTGCCACTGTGATGCTGATCAAGCGTTTGTGC
AATCGAAGCTAGATGAGATCGTGTACGTGCGTCTGCCGCAGGGTTGTGGG
CCCCTTTCGGGTAAGATTGTGAGACTTGCCCGTAGTCTTTTTGGCTTGAA
GCAGGCGTCACGCACGTGGCACCACCACCTTGTTCAGGGCATGAAATCGC
TTGGGTTTGACCAATGTGCTGCTGATGCGTGTGTCATGCGTTTGATCGAG
GATGGTGTGCTTTCCATGGTAATTGTGGTGCATGTGGATGACATTTTTTC
CATCGGGCGGAAGAGTAGGTGTGACAGGTTTGGCCGAGACTTGAACGCCT
ACGTTCCCATCACCAACCTCGGAGCGTTGCGCTTGTATGCGGGAGTTCGT
TTTTCACGCGATTGGGATGCTGGAACGCTTACATTGTCGCAAGAAACTTT
TGCTGTCAGCTTGGTTGCGAAGTTTGGTGTCACGCGCAACAAGGAGACCC
TGATGCCTGTTGGAGTGAAGCTTGATGATTTTTCTGCTGACGAACCTGAT
TTTCTTGAGCCTTTTCGTTCTTTGGTATTCCCATGCACCTAAGAGCATAC
ACTGGCGGGCTGCGTTGCATATTGCGATGTACATTAGATTCACGAGCTCT
TGGTATTACATTTCAGCGGGGTTCAAGGGAGGGTATCGATTTGCGCTTGT
ATGTTGACTCCAACTATGCCAGCCGGGCCACTAACCGGCGGTCGGTCTCG
GGAGCAGTTGTGATGTGCGACGGTGCATGTGTTTCGTTGTTATCTAGGAC
GCAGAAAAGTGTGACCCTGTCGTCGACGGAAGCACAGTATGTTGCGATGG
CT
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protein sequence of EsuBft343_16a-0001

>EsuBft343_16 ID=EsuBft343_16|Name=EsuBft343_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=497bp
MYISVASSTSPADRFSSGGTVILAAGLCSSSSSNNSGRSQAXAAPPPEQQ
HQCSCCGEQGHVHQCCKFNLARGPFQQRRNGDFGGGSVFQQQQQQQRQKP
GMVYGSTGGFQQQPRQQQLAAGSTHGVVGQLSGGVVVGEKGGGAAAGSFV
ASLLVKAPANVSSPNAVTHPATHSPPRPTTSRVAPAVARKRAELDLMEAG
YSKSVAMRQIPGPYSVIVVSPSAASQQPKQSPSQQQQQQQQQPAASLVPS
PTANHADEIRPAAPSSTVGICGTASAPAVATAASVRAAVAGVTPHGATTA
VAATETAAVGTAVAAASPVAALAPGSQDTCADSGGLTYSSGGDDDIYGFE
RGASYPFDPGGLFAQEVREEGDHNSGGKEDRSSGGRSSSSGDGGDGAAWH
EASTHPFDRGKRSRWRRATRGAVLGVDLPFDRGRDAWAHAGGTIIGTGGG
ADSFGGQLRPSPFADNTMIRSGDSRTRRDMSGGFGQSSGGRWQRRRR
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mRNA from alignment at Scaffold_246:371268..374404-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft343_16a-0001 ID=EsuBft343_16a-0001|Name=EsuBft343_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3137bp|location=Sequence derived from alignment at Scaffold_246:371268..374404- (Ectocarpus subulatus male Bft15b)
GTGGACACCAGCAGCAGGTGACGAGAGGAGTGCAGCAGCAGAGCAGCCGC
CGCACCCACGTCCTCACAGGGCACAGCCGGTACCAGCATCAGCAGCAGCT
GGTGCCCAACGAACGCCCACGCCGTCCCGCTGCTCCCCCTCCCGAGCAGC
AGCACCAATGCAGCTGCTGTGGAGAGCAAGGTCATGTACATCAGTGTTGC
AAGTTCAACCTCGCCCGCGGACCGTTTCAGCAGCGGAGGAACGGTGATTT
TGGCGGCGGGTCTGTGTTCCAGCAGCAGCAGCAACAACAGCGGCAGAAGC
CAGGCANCCGCTGCTCCCCCTCCCGAGCAGCAGCACCAATGCAGCTGCTG
TGGAGAGCAAGGTCATGTACATCAGTGTTGCAAGTTCAACCTCGCCCGCG
GACCGTTTCAGCAGCGGAGGAACGGTGATTTTGGCGGCGGGTCTGTGTTC
CAGCAGCAGCAGCAACAACAGCGGCAGAAGCCAGGCATGGTGTATGGCAG
CACTGGTGGATTTCAGCAGCAGCCGCGGCAACAACAGCTGGCGGCCGGCT
CCACCCATGGTGTGGTTGGACAGTTGAGTGGTGGGGTGGTTGTTGGCGAG
AAGGGGGGGGGTGCTGCTGCCGGTTCGTTTGTGGCGTCGTTGCTGGTAAA
AGCCCCCGCCAACGTATCTTCTCCCAACGCAGTTACGCACCCCGCCACTC
ATTCTCCCCCGCGACCCACGACATCACGTGTAGCACCGGCAGTAGCGCGG
AAACGCGCAGAACTGGATCTCATGGAGGCCGGGTACAGTAAAAGTGTAGC
AATGCGGCAGATTCCCGGACCATACAGCGTTATTGTAGTTTCGCCATCCG
CGGCATCGCAACAACCCAAGCAGTCACCGTCGCAGCAGCAGCAGCAGCAG
CAGCAACAGCCAGCAGCCTCACTTGTGCCATCACCCACAGCAAACCATGC
CGATGAGATCCGTCCTGCTGCCCCATCTTCAACGGTTGGGATTTGTGGAA
CGGCATCCGCACCGGCGGTCGCAACGGCGGCTTCGGTCAGAGCTGCGGTG
GCAGGAGTAACGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAAC
GGCGGCGGTTGGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGG
CGCCGGGCAGTCAAGATACGTGCGCCGACAGCGGCGGCCTGACCTACAGC
AGCGGTGGAGACGACGACATCTACGGTTTCGAGAGGGGCGCGTCGTACCC
TTTTGACCCGGGAGGATTATTTGCGCAGGAGGTGCGTGAAGAGGGAGATC
ACAACAGCGGTGGTAAGGAGGACCGGAGCAGCGGTGGCCGCAGCAGCAGC
AGCGGCGACGGCGGAGACGGCGCGGCCTGGCATGAAGCGTCAACGCATCC
CTTTGACAGAGGGAAGCGGTCCCGGTGGAGGAGAGCGACCAGGGGGGCCG
TGCTGGGAGTGGACCTCCCATTCGATCGAGGTAGAGATGCATGGGCACAT
GCCGGGGGGTGATGCTTCGCACCAAGCGGCAGCAACACCGGGAGCGGCGG
CGGCGGCGGCGGCGGCACGGACGCTGTGGTCAGAGCCCCGTCGCCGACAG
CACCATCATCGGAACCGGCGGCGGCGCGGACAGCTTCGGCGGACAGCTTC
GGCCGAGCCCCTTCGCCGACAACACCATGATCAGGAGCGGCGACAGCAGG
ACGCGCCGCGACATGAGTGGTGGCTTCGGCCAGAGCTCCGGGGGGCGGTG
GCAACGGCGACGGCGGTGACGGTAGTAGCGGCCGCAGCAGCAGCAGCGGT
GGCGGCGGCGGCGGCGGCGGCTTCCGCAGCAGCGACGGCGGGAGCGGCGC
CAACGGCAACGGCAGCAGTTTGAGCGGGGAGAAAGGGCGCGCGAGCGGGG
GGAGAGTTTACCCTTGTCTGTTTCCCCCCCGCCCACCCCTCCCGTACCTC
CCACAGCGCCACACCTGCAGCAATGGATGGTCTGGTTGGGGCGGGCACGT
TCGAGCCGGCAGGAGGGCTCTAGCAACGAGGAACGAACGTCATCTCTGCC
AAATGGGTCTACACGTGGAAACCTGATGAATTCGGTGATGTGTTGCGTGC
AAAGGCTCGGCTTGTCGCTAGGGGTTTCGGTCAGCGTGAAGGTTTTGACT
ATTTTGAGACTTTTTCCCCGTGCCCTACCCATCCGAGTATTCGCCCCTTG
TCTGCTATCGCGTGTGAAATGGGTTGGGACGTGTGCCACTGTGATGCTGA
TCAAGCGTTTGTGCAATCGAAGCTAGATGAGATCGTGTACGTGCGTCTGC
CGCAGGGTTGTGGGCCCCTTTCGGGTAAGATTGTGAGACTTGCCCGTAGT
CTTTTTGGCTTGAAGCAGGCGTCACGCACGTGGCACCACCACCTTGTTCA
GGGCATGAAATCGCTTGGGTTTGACCAATGTGCTGCTGATGCGTGTGTCA
TGCGTTTGATCGAGGATGGTGTGCTTTCCATGGTAATTGTGGTGCATGTG
GATGACATTTTTTCCATCGGGCGGAAGAGTAGGTGTGACAGGTTTGGCCG
AGACTTGAACGCCTACGTTCCCATCACCAACCTCGGAGCGTTGCGCTTGT
ATGCGGGAGTTCGTTTTTCACGCGATTGGGATGCTGGAACGCTTACATTG
TCGCAAGAAACTTTTGCTGTCAGCTTGGTTGCGAAGTTTGGTGTCACGCG
CAACAAGGAGACCCTGATGCCTGTTGGAGTGAAGCTTGATGATTTTTCTG
CTGACGAACCTGATTTTCTTGAGCCTTTTCGTTCTTTGGTAGGTCATCTC
ATGTAGCTTGCTAACCAGACTCGGCCGGATATCCTTAATGCCGTGGGGTC
CGTTGCGAGGTATTCCCATGCACCTAAGAGCATACACTGGCGGGCTGCGT
TGCATATTGCGATGTACATTAGATTCACGAGCTCTTGGTATTACATTTCA
GCGGGGTTCAAGGGAGGGTATCGATTTGCGCTTGTATGTTGACTCCAACT
ATGCCAGCCGGGCCACTAACCGGCGGTCGGTCTCGGGAGCAGTTGTGATG
TGCGACGGTGCATGTGTTTCGTTGTTATCTAGGACGCAGAAAAGTGTGAC
CCTGTCGTCGACGGAAGCACAGTATGTTGCGATGGCT
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Coding sequence (CDS) from alignment at Scaffold_246:371268..374404-

>EsuBft343_16a-0001 ID=EsuBft343_16a-0001|Name=EsuBft343_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_246:371268..374404- (Ectocarpus subulatus male Bft15b)
ATGTACATCAGTGTTGCAAGTTCAACCTCGCCCGCGGACCGTTTCAGCAG
CGGAGGAACGGTGATTTTGGCGGCGGGTCTGTGTTCCAGCAGCAGCAGCA
ACAACAGCGGCAGAAGCCAGGCANCCGCTGCTCCCCCTCCCGAGCAGCAG
CACCAATGCAGCTGCTGTGGAGAGCAAGGTCATGTACATCAGTGTTGCAA
GTTCAACCTCGCCCGCGGACCGTTTCAGCAGCGGAGGAACGGTGATTTTG
GCGGCGGGTCTGTGTTCCAGCAGCAGCAGCAACAACAGCGGCAGAAGCCA
GGCATGGTGTATGGCAGCACTGGTGGATTTCAGCAGCAGCCGCGGCAACA
ACAGCTGGCGGCCGGCTCCACCCATGGTGTGGTTGGACAGTTGAGTGGTG
GGGTGGTTGTTGGCGAGAAGGGGGGGGGTGCTGCTGCCGGTTCGTTTGTG
GCGTCGTTGCTGGTAAAAGCCCCCGCCAACGTATCTTCTCCCAACGCAGT
TACGCACCCCGCCACTCATTCTCCCCCGCGACCCACGACATCACGTGTAG
CACCGGCAGTAGCGCGGAAACGCGCAGAACTGGATCTCATGGAGGCCGGG
TACAGTAAAAGTGTAGCAATGCGGCAGATTCCCGGACCATACAGCGTTAT
TGTAGTTTCGCCATCCGCGGCATCGCAACAACCCAAGCAGTCACCGTCGC
AGCAGCAGCAGCAGCAGCAGCAACAGCCAGCAGCCTCACTTGTGCCATCA
CCCACAGCAAACCATGCCGATGAGATCCGTCCTGCTGCCCCATCTTCAAC
GGTTGGGATTTGTGGAACGGCATCCGCACCGGCGGTCGCAACGGCGGCTT
CGGTCAGAGCTGCGGTGGCAGGAGTAACGCCGCATGGAGCGACAACGGCA
GTGGCTGCGACGGAAACGGCGGCGGTTGGGACAGCAGTAGCAGCGGCGTC
CCCGGTTGCCGCGTTGGCGCCGGGCAGTCAAGATACGTGCGCCGACAGCG
GCGGCCTGACCTACAGCAGCGGTGGAGACGACGACATCTACGGTTTCGAG
AGGGGCGCGTCGTACCCTTTTGACCCGGGAGGATTATTTGCGCAGGAGGT
GCGTGAAGAGGGAGATCACAACAGCGGTGGTAAGGAGGACCGGAGCAGCG
GTGGCCGCAGCAGCAGCAGCGGCGACGGCGGAGACGGCGCGGCCTGGCAT
GAAGCGTCAACGCATCCCTTTGACAGAGGGAAGCGGTCCCGGTGGAGGAG
AGCGACCAGGGGGGCCGTGCTGGGAGTGGACCTCCCATTCGATCGAGGTA
GAGATGCATGGGCACATGCCGGGGGCACCATCATCGGAACCGGCGGCGGC
GCGGACAGCTTCGGCGGACAGCTTCGGCCGAGCCCCTTCGCCGACAACAC
CATGATCAGGAGCGGCGACAGCAGGACGCGCCGCGACATGAGTGGTGGCT
TCGGCCAGAGCTCCGGGGGGCGGTGGCAACGGCGACGGCGGTGA
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