EsuBft343_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft343_15a-0001
Unique Name	EsuBft343_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:359209..362409 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005100548.1
ProteomeId	EsuBft343_15
Protein domains	Coil
Protein domains	PTHR25952
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	309
Evalue	5.01e-10
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a	EsuBft343_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 359209..362409 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a-0001	EsuBft343_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 361514..362385 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a-0001-exon	EsuBft343_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 359209..359420 -
EsuBft343_15a-0001-exon	agat-exon-30083	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 359478..361569 -
EsuBft343_15a-0001-exon	agat-exon-30082	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 361620..362409 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a-0001-exon	agat-three_prime_utr-13378	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 359209..359420 -
EsuBft343_15a-0001-exon	agat-three_prime_utr-13379	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 359478..361513 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a-0001-cds	EsuBft343_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 361514..361569 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft343_15a-0001-exon	agat-five_prime_utr-8489	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 362386..362409 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:359209..362409-
coding sequence from alignment at Scaffold_246:359209..362409-

spliced messenger RNA

>EsuBft343_15a-0001 ID=EsuBft343_15a-0001|Name=EsuBft343_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3094bp|location=Sequence derived from alignment at Scaffold_246:359209..362409- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTACCGCCGGAACAGTGCTTCAATGTACGACAGGCGACGAGCCAACCG
CCAGCTCAAGATCCGGCTANCGGTCAGCGCCGCCGGCCAGACGTACAAGC
AGACAGATCGGTTTATGTACTTCGGACGTACCTTCTCCGCGGACAGGAAG
GCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCG
CCGGAACNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTGAAGTGGTGGAGA
CTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACG
AAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAG
CAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCC
AGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTG
TGCTTCGCGGGCTTTGTTATGCGCACGGAGGACAGCCGCCTCCCCAAGCG
CATGCTGTTAAGAGCGATGACGGGGGGCGTGGGATACCGGGGCGGGCAGG
AGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATG
GGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGA
GGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAAT
GGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAA
GCAGAAGCAGAGAGTACGGCCTCAGGACCGAAGAGAAATGAGAGCGCCGA
GGACCCGGAGGTGTGGTACAACATGGTCGAGGACGGGGCGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGAAGG
GCGGCCGAGGCAGCACTTGTGGTGCACTATTTACCCGGCTAATGCTGTCG
CGATCCTGTTTCCCTCCCTTCTGTATGTTATACTCATTTATGTATGTCCT
TTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTTTGTTTCTTTTTTTTCA
TGAACTCCCTGCCTACTCTGCTGTGTTGGGTACCGTGATCTTGCTTTGCT
GTTGCCTTTGTTTTTGCACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTT
GTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCT
GGTACGTTACCCGTTGATTTTTTCTTTGGGAGGGTGTGGGAAGCGTCCTC
CTTTATTTTTGTTTTTGTTGTATTTTGATCGGTTTCCGAGGGCGCTTTTC
TCGAATGGTCGGTGCGATACCTGCTCTTTTCTTTCTTTCATTTTGTTTTC
TTGTTCCGAGTGGTTTGTACCCTATTTTTGGTTTGTTCCCCGCGGCGTCG
TATGTGCCGGGTTTTGAGACCACGAGCTCCCCATTTTTTGTGGACTATAG
AGCTAATGTGAGAAACAACAACAACAACATACCTCGGAGTAGAGATCGCA
AAAGACTCCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAA
AGCACGAGCAGGGAGGCTGCACCCAATACTCGCAAACCGGCACCTCGATA
CACGCATCAAATTGACGATTTTGAAGAGCGTAATCGCACCGCCGCTAGAG
TACGCCGGAGAAGTATGGGAAGGAAATAAGAAGAAGTCGAGGAGTGGCCA
AAATCGGGTACACTCGGCCCCAATCCGGCCATTATCGGGTACACTTGTTT
TTCACAGTCGGCAGCACTCTCCTGGCGCCATCTGATTGGCCGACGCCCGC
CCCTACCCGGCCCTGACCCAACACAGCAGAATATGAGCGATGACGTAGAG
AACACCGCGGTCCTCGCGCAAGGCGCGTGCTACTTCACCACCAGCCATCT
TAGGACAACGTTCATGCTGCGTGTACCACCACTCTCTCTATGTTTCCCCA
TCTCCTGTGGCAAGCCCGCAGTTCCTTGTCTCTCCCACGTACTCACGAGA
GTTCGAAGTCAAGGAAGTATTATCGCTGTTTAATCTGAGGTCCCAAGGCA
TCCACTGCCTGCTGCTGCTGCATTACTGTAGTCTATGTATGTACGATCCT
CTTCCTACACAACATGTGTCATATATCTCCGGTCTTGATCGAGACATTAC
CACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTAGTCTATGTATGTA
CGATCCTCTTCCTACACAACATGTGTCATATATCTCCGGTCTTGATCGAG
ACATTACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTAGTCTAT
GTATGTACGATCCTCTTCCTACACAACATGTGTCATATATCTCCGGTCTT
GATCGAGACATTACCACGGCATCCACTGCTTGCTGCTGCTGCATTGCTGT
GTACGAACGACCCTCTGCGTACAGAACAACGTGCCATACATCTCCCGTGT
TGATGTGTCTAGAAATGTATTCCAGACGAAAGGGACACCCTGATGCTTCT
GTGCCTGATGCTTCCGTGGACATATCTGAGCTGCGTCATGTTTTTGTGTG
CAGCTCAAGTGATCACGTGAGGTATTGAGAGGTATTCATCCACCGCCGCC
CGCCTGGTCCTCTCTCTCCTCCCTCTCGGATACGAAACGAGAACCGAGAG
AGTTCCGCCGTCGGCGGTGGGTTGCAGGAGCAGTCCGCCTCCGCCCGCCG
TCGGAAGCGTCGGAACTCGAGTGCGGGGTGTTGGTGACGTGTGTTCGTGA
GCGTGGTCTGCTGGTGGTCTGTTCGTCGAATAGCCCAGCCATTTTCGGGT
AGGCGAGAGTAGGATCGGGTACCCCTCCGGGGGTTGAGTAGCCAAGATCG
GATGCACCCGGTGGGAATAGGGTCAGGACCGGGTAGGGGCGGGC

protein sequence of EsuBft343_15a-0001

>EsuBft343_15 ID=EsuBft343_15|Name=EsuBft343_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=274bp
MYDRRRANRQLKIRLXVSAAGQTYKQTDRFMYFGRTFSADRKADREITSR
SCRAWKCYRRNXXXXXXXXQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ
FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMR
TEDSRLPKRMLLRAMTGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGK
WKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAESTAS
GPKRNESAEDPEVWYNMVEDGAXX

mRNA from alignment at Scaffold_246:359209..362409-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft343_15a-0001 ID=EsuBft343_15a-0001|Name=EsuBft343_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3201bp|location=Sequence derived from alignment at Scaffold_246:359209..362409- (Ectocarpus subulatus male Bft15b)
TGCTACCGCCGGAACAGTGCTTCAATGTACGACAGGCGACGAGCCAACCG
CCAGCTCAAGATCCGGCTANCGGTCAGCGCCGCCGGCCAGACGTACAAGC
AGACAGATCGGTTTATGTACTTCGGACGTACCTTCTCCGCGGACAGGAAG
GCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCG
CCGGAACNNNNNNNNNNNNNNNNNNNNNNNNCAGGCTGAAGTGGTGGAGA
CTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACG
AAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAG
CAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCC
AGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTG
TGCTTCGCGGGCTTTGTTATGCGCACGGAGGACAGCCGCCTCCCCAAGCG
CATGCTGTTAAGAGCGATGACGGGGGGCGTGGGATACCGGGGCGGGCAGG
AGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATG
GGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGA
GGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAAT
GGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAA
GCAGAAGCAGAGAGTACGGCCTCAGGACCGAAGAGAAATGGTNCGTGGCC
TTCAACATGGGAGACGAAAAGGAAGGGAGGAAATGGAAAGAGAGCGCCGA
GGACCCGGAGGTGTGGTACAACATGGTCGAGGACGGGGCGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGAAGG
GCGGCCGAGGCAGCACTTGTGGTGCACTATTTACCCGGCTAATGCTGTCG
CGATCCTGTTTCCCTCCCTTCTGTATGTTATACTCATTTATGTATGTCCT
TTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTTTGTTTCTTTTTTTTCA
TGAACTCCCTGCCTACTCTGCTGTGTTGGGTACCGTGATCTTGCTTTGCT
GTTGCCTTTGTTTTTGCACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTT
GTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCT
GGTACGTTACCCGTTGATTTTTTCTTTGGGAGGGTGTGGGAAGCGTCCTC
CTTTATTTTTGTTTTTGTTGTATTTTGATCGGTTTCCGAGGGCGCTTTTC
TCGAATGGTCGGTGCGATACCTGCTCTTTTCTTTCTTTCATTTTGTTTTC
TTGTTCCGAGTGGTTTGTACCCTATTTTTGGTTTGTTCCCCGCGGCGTCG
TATGTGCCGGGTTTTGAGACCACGAGCTCCCCATTTTTTGTGGACTATAG
AGCTAATGTGAGAAACAACAACAACAACATACCTCGGAGTAGAGATCGCA
AAAGACTCCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAA
AGCACGAGCAGGGAGGCTGCACCCAATACTCGCAAACCGGCACCTCGATA
CACGCATCAAATTGACGATTTTGAAGAGCGTAATCGCACCGCCGCTAGAG
TACGCCGGAGAAGTATGGGAAGGAAATAAGAAGAAGTCGAGGAGTGGCCA
AAATCGGGTACACTCGGCCCCAATCCGGCCATTATCGGGTACACTTGTTT
TTCACAGTCGGCAGCACTCTCCTGGCGCCATCTGATTGGCCGACGCCCGC
CCCTACCCGGCCCTGACCCAACACAGCAGAATATGAGCGATGACGTAGAG
AACACCGCGGTCCTCGCGCAAGGCGCGTGCTACTTCACCACCAGCCATCT
TAGGACAACGTTCATGCTGCGTGTACCACCACTCTCTCTATGTTTCCCCA
TCTCCTGTGGCAAGCCCGCAGTTCCTTGTCTCTCCCACGTACTCACGAGA
GTTCGAAGTCAAGGAAGTATTATCGCTGTTTAATCTGAGGTCCCAAGGCA
TCCACTGCCTGCTGCTGCTGCATTACTGTAGTCTATGTATGTACGATCCT
CTTCCTACACAACATGTGTCATATATCTCCGGTCTTGATCGAGACATTAC
CACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTAGTCTATGTATGTA
CGATCCTCTTCCTACACAACATGTGTCATATATCTCCGGTCTTGATCGAG
ACATTACCACGGCATCCACTGCTTGCTGCTGCTGCATTACTGTAGTCTAT
GTATGTACGATCCTCTTCCTACACAACATGTGTCATATATCTCCGGTCTT
GATCGAGACATTACCACGGCATCCACTGCTTGCTGCTGCTGCATTGCTGT
GTACGAACGACCCTCTGCGTACAGAACAACGTGCCATACATCTCCCGTGT
TGATGTGTCTAGAAATGTATTCCAGACGAAAGGGACACCCTGATGCTTCT
GTGCCTGATGCTTCCGTGGACATATCTGAGCTGCGTCATGTTTTTGTGTG
CAGCTCAAGTGATCACGTGAGGTATTGAGAGGTATTCATCCACCGCCGCC
CGCCTGGTCCTCTCTCTCCTCCCTCTCGGATACGAAACGAGAACCGAGAG
AGTTCCGCCGTCGGCGGTGGGTTGCAGGAGCAGTCTTGCAGGAGAGAGAT
CCACTTCAAACGAGAGTTCCGCCGCGTTAGCCGCGTTAGGTCCGCCTCCG
CCCGCCGTCGGAAGCGTCGGAACTCGAGTGCGGGGTGTTGGTGACGTGTG
TTCGTGAGCGTGGTCTGCTGGTGGTCTGTTCGTCGAATAGCCCAGCCATT
TTCGGGTAGGCGAGAGTAGGATCGGGTACCCCTCCGGGGGTTGAGTAGCC
AAGATCGGATGCACCCGGTGGGAATAGGGTCAGGACCGGGTAGGGGCGGG
C

Coding sequence (CDS) from alignment at Scaffold_246:359209..362409-

>EsuBft343_15a-0001 ID=EsuBft343_15a-0001|Name=EsuBft343_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=822bp|location=Sequence derived from alignment at Scaffold_246:359209..362409- (Ectocarpus subulatus male Bft15b)
ATGTACGACAGGCGACGAGCCAACCGCCAGCTCAAGATCCGGCTANCGGT
CAGCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTATGTACTTCG
GACGTACCTTCTCCGCGGACAGGAAGGCCGACCGGGAGATCACGAGCCGC
AGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACNNNNNNNNNNNNNNNNN
NNNNNNNCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGT
GGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAG
TTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCC
CCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCG
AGGCCACCGTGCGCAAACGGAGACTGTGCTTCGCGGGCTTTGTTATGCGC
ACGGAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAAGAGCGATGACGGG
GGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGAAA
TGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACAAGGTCGAGGA
CGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGT
CCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCTCA
GGACCGAAGAGAAATGAGAGCGCCGAGGACCCGGAGGTGTGGTACAACAT
GGTCGAGGACGGGGCGGNNNNN