EsuBft3435_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3435_4a-0001
Unique NameEsuBft3435_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:597450..598035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft3435_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length46
Hectar predicted targeting categoryother localisation
Evalue8.01e-56
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4aEsuBft3435_4aEctocarpus subulatus male Bft15bgeneScaffold_129 597450..598035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4a-0001-exonEsuBft3435_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 597450..597807 -
EsuBft3435_4a-0001-exonagat-exon-83405Ectocarpus subulatus male Bft15bexonScaffold_129 597934..598035 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4a-0001-exonagat-three_prime_utr-13370Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 597450..597484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4a-0001-cdsEsuBft3435_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 597485..597807 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4a-0001-exonagat-five_prime_utr-8481Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 597974..598035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_4a-0001EsuBft3435_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 597485..597973 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3435_4a-0001 ID=EsuBft3435_4a-0001|Name=EsuBft3435_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=460bp|location=Sequence derived from alignment at Scaffold_129:597450..598035- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTTTTCTTGTGCTGTTTGGGATATTGCTGATATTCTGTTTCCGCGTCAC
GTCTACGAACAAATGGTGTGTTCACTTCAGTTGAGTAACGGCGATGACAC
CCGGAATGGAGATCCCGGCGGGTTTCGCCTTCAAGAATCTACCCCCACTG
CTCTTGACAGATTGCTTTTGCAACGTGGAGTGCTTGTTCGGCTGGGCATG
GGGTGGTTCGGTGGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTA
CGACTACTGTGTGCAGCTGGAAGTAGACCACAGTACGCGCAATATGAAGC
TGCCCTTAGACAAGTACAGCGGAGATCCGGACGCGGCGGCAGGCTCATGG
GTTTTGCTTGAGAGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAAAGT
CACTCCTGTGGACCAAGGCGATTGACAGTTGCCCCATGGAGGGGTGTTTG
CGGGTATGAA
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protein sequence of EsuBft3435_4a-0001

>EsuBft3435_4 ID=EsuBft3435_4|Name=EsuBft3435_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MVCSLQLSNGDDTRNGDPGGFRLQESTPTALDRLLLQRGVLVRLGMGWFG
GLIIQQSPQRHLYDYCVQLEVDHSTRNMKLPLDKYSGDPDAAAGSWVLLE
SVSRAGRVRTPKVTPVDQGD
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mRNA from alignment at Scaffold_129:597450..598035-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3435_4a-0001 ID=EsuBft3435_4a-0001|Name=EsuBft3435_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=586bp|location=Sequence derived from alignment at Scaffold_129:597450..598035- (Ectocarpus subulatus male Bft15b)
TCTTTTCTTGTGCTGTTTGGGATATTGCTGATATTCTGTTTCCGCGTCAC
GTCTACGAACAAATGGTGTGTTCACTTCAGTTGAGTAACGGCGATGACAC
CCGTACGTTCCTTCTCGTGTTTCACGGTACCCTTCGTCGCAGACATGTCT
CAATCCCAGACCGACGAGCTAGCTCTTTTGGACGAGGACGACAGCCTGGA
CCCAGTCGACCCGGAGGACGAGACGCAGGGAATGGAGATCCCGGCGGGTT
TCGCCTTCAAGAATCTACCCCCACTGCTCTTGACAGATTGCTTTTGCAAC
GTGGAGTGCTTGTTCGGCTGGGCATGGGGTGGTTCGGTGGGTTGATCATT
CAGCAATCTCCGCAGCGCCACCTGTACGACTACTGTGTGCAGCTGGAAGT
AGACCACAGTACGCGCAATATGAAGCTGCCCTTAGACAAGTACAGCGGAG
ATCCGGACGCGGCGGCAGGCTCATGGGTTTTGCTTGAGAGCGTCAGTAGG
GCGGGAAGGGTACGCACCCCCAAAGTCACTCCTGTGGACCAAGGCGATTG
ACAGTTGCCCCATGGAGGGGTGTTTGCGGGTATGAA
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Coding sequence (CDS) from alignment at Scaffold_129:597450..598035-

>EsuBft3435_4a-0001 ID=EsuBft3435_4a-0001|Name=EsuBft3435_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_129:597450..598035- (Ectocarpus subulatus male Bft15b)
ATGGTGTGTTCACTTCAGTTGAGTAACGGCGATGACACCCGGAATGGAGA
TCCCGGCGGGTTTCGCCTTCAAGAATCTACCCCCACTGCTCTTGACAGAT
TGCTTTTGCAACGTGGAGTGCTTGTTCGGCTGGGCATGGGGTGGTTCGGT
GGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTACGACTACTGTGT
GCAGCTGGAAGTAGACCACAGTACGCGCAATATGAAGCTGCCCTTAGACA
AGTACAGCGGAGATCCGGACGCGGCGGCAGGCTCATGGGTTTTGCTTGAG
AGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAAAGTCACTCCTGTGGA
CCAAGGCGATTGA
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