EsuBft3435_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3435_2a-0001
Unique NameEsuBft3435_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:601312..602509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft3435_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length98
Hectar predicted targeting categoryother localisation
Evalue1.16e-49
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2aEsuBft3435_2aEctocarpus subulatus male Bft15bgeneScaffold_129 601312..602509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2a-0001EsuBft3435_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 602173..602463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2a-0001-exonEsuBft3435_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 601312..601778 -
EsuBft3435_2a-0001-exonagat-exon-83404Ectocarpus subulatus male Bft15bexonScaffold_129 601989..602509 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2a-0001-exonagat-three_prime_utr-13367Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 601312..601778 -
EsuBft3435_2a-0001-exonagat-three_prime_utr-13368Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 601989..602172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2a-0001-cdsEsuBft3435_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 602173..602463 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3435_2a-0001-exonagat-five_prime_utr-8479Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 602464..602509 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3435_2a-0001 ID=EsuBft3435_2a-0001|Name=EsuBft3435_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=988bp|location=Sequence derived from alignment at Scaffold_129:601312..602509- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTTTTTAATTTACCACGCAACGTGGTGCAGCGTGCCACGAGTTGCATGC
CGTGCAGGGGGATCATGTCCCTGTCCAACCCCTTATCCCATGGATTGTTG
AAGGACCTTGGCAACCTCTCGGAGTTGAAACAACGAGGACTGATTCTTGA
CCGTCACTTCGAGACGATAAAGGCACATGTGAAGGCGGGCAACTCCGTTG
CGAAGGAGCGATGGGACGCAATCGAAAACGCATGGGGGCTGAAGCAGACG
GGTGTCTTCAACGAACAAGAGTGGATCACGCAGATTGATGGAGAGGCCCA
GGGTATTACCAGCAGCAGCACCCGTCCGTCGTTTTAAACGCCACAAGATG
CGGGTGGCGCGCGAGGTGCACCGTCTTCGCACCCACCGCCTGCTACTGCT
GCGGCTGCCGGGAAGAGAAAGAAAGGTCGCAGATCGGGGGAAGCAAGCCA
GGGATCGAGCTGCCCAAGGTGTTCTAGGTGGCAACATCATCAACGCGTTC
GCTCGTGGCAGCGGAAAACCGATGTCTGCATTTGGGTGCAAAAGACACGG
GTTCAAACCCCGCTGCTCCCCTAATTTTCTTCCGGAGTTGTTGTTGTTGT
TGTCTTCATATTAAACCGTATGTCAGTTGCTAAGGGTGTGTCTTATCAGG
CCACAAAAATACGTATTTGGTTACGAAACCGTATTTTCTTGAAATATATG
GAGGCGTTCCTCTACATTTCCGTAAAAGAGCAAGGCGTATTTTTTGGGGG
CTTGCTCCTTTTACTGTTCGGTGAAAAATTTCCCGCTTTTTTGCGACTAC
CGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCACACCACACCTAGAC
AGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAACTCCACTACCATGC
CTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGCGCAACGCCGG
GAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGT
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protein sequence of EsuBft3435_2a-0001

>EsuBft3435_2 ID=EsuBft3435_2|Name=EsuBft3435_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MPCRGIMSLSNPLSHGLLKDLGNLSELKQRGLILDRHFETIKAHVKAGNS
VAKERWDAIENAWGLKQTGVFNEQEWITQIDGEAQGITSSSTRPSF
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mRNA from alignment at Scaffold_129:601312..602509-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3435_2a-0001 ID=EsuBft3435_2a-0001|Name=EsuBft3435_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1198bp|location=Sequence derived from alignment at Scaffold_129:601312..602509- (Ectocarpus subulatus male Bft15b)
TTTTTTTAATTTACCACGCAACGTGGTGCAGCGTGCCACGAGTTGCATGC
CGTGCAGGGGGATCATGTCCCTGTCCAACCCCTTATCCCATGGATTGTTG
AAGGACCTTGGCAACCTCTCGGAGTTGAAACAACGAGGACTGATTCTTGA
CCGTCACTTCGAGACGATAAAGGCACATGTGAAGGCGGGCAACTCCGTTG
CGAAGGAGCGATGGGACGCAATCGAAAACGCATGGGGGCTGAAGCAGACG
GGTGTCTTCAACGAACAAGAGTGGATCACGCAGATTGATGGAGAGGCCCA
GGGTATTACCAGCAGCAGCACCCGTCCGTCGTTTTAAACGCCACAAGATG
CGGGTGGCGCGCGAGGTGCACCGTCTTCGCACCCACCGCCTGCTACTGCT
GCGGCTGCCGGGAAGAGAAAGAAAGGTCGCAGATCGGGGGAAGCAAGCCA
GGGATCGAGCTGCCCAAGGTGTTCTAGGTGGCAACATCATCAACGCGTTC
GCTCGTGGCAGCGGAAAACCGGTGAGTTCAGTCATCTGACGAACTCTGTT
GCTGTGATGATGTACATATATGCAGCCGTCGTACGGTGGTCCAGCAGCTG
TATGTAGTGTAAATACAGCAGGAGTGCTACTGCTGCTGCTGTGGAGAACA
CCTTCATAAAGGTTGAAACTCCCCAACGTCTGTCGAGGACGAAGCCCTCG
TTTCCACAATGGCGTCGACAAGAGTTGACAGATGTCTGCATTTGGGTGCA
AAAGACACGGGTTCAAACCCCGCTGCTCCCCTAATTTTCTTCCGGAGTTG
TTGTTGTTGTTGTCTTCATATTAAACCGTATGTCAGTTGCTAAGGGTGTG
TCTTATCAGGCCACAAAAATACGTATTTGGTTACGAAACCGTATTTTCTT
GAAATATATGGAGGCGTTCCTCTACATTTCCGTAAAAGAGCAAGGCGTAT
TTTTTGGGGGCTTGCTCCTTTTACTGTTCGGTGAAAAATTTCCCGCTTTT
TTGCGACTACCGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCACACC
ACACCTAGACAGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAACTCC
ACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGC
GCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGT
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Coding sequence (CDS) from alignment at Scaffold_129:601312..602509-

>EsuBft3435_2a-0001 ID=EsuBft3435_2a-0001|Name=EsuBft3435_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_129:601312..602509- (Ectocarpus subulatus male Bft15b)
ATGCCGTGCAGGGGGATCATGTCCCTGTCCAACCCCTTATCCCATGGATT
GTTGAAGGACCTTGGCAACCTCTCGGAGTTGAAACAACGAGGACTGATTC
TTGACCGTCACTTCGAGACGATAAAGGCACATGTGAAGGCGGGCAACTCC
GTTGCGAAGGAGCGATGGGACGCAATCGAAAACGCATGGGGGCTGAAGCA
GACGGGTGTCTTCAACGAACAAGAGTGGATCACGCAGATTGATGGAGAGG
CCCAGGGTATTACCAGCAGCAGCACCCGTCCGTCGTTTTAA
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