EsuBft3431_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3431_3a-0001
Unique NameEsuBft3431_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:373475..374493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3431_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length34
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3431_3aEsuBft3431_3aEctocarpus subulatus male Bft15bgeneScaffold_630 373475..374493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3431_3a-0001-exonEsuBft3431_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 373475..373570 -
EsuBft3431_3a-0001-exonagat-exon-87436Ectocarpus subulatus male Bft15bexonScaffold_630 374242..374493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3431_3a-0001-cdsEsuBft3431_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 373475..373570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3431_3a-0001EsuBft3431_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 373475..374493 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3431_3a-0001 ID=EsuBft3431_3a-0001|Name=EsuBft3431_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=348bp|location=Sequence derived from alignment at Scaffold_630:373475..374493- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTCAGCCGGAAGAAGCGCGTGGGGCTCGGAACAGGAACGGGCAT
GTCATGGAAGGATAACAACGCGTTCGCGGATGACCAGGCAAACCTCCTAT
TCTTGGAAAGCATGAGGGAAAGAATCGATGCAATGCTCTCTAGCGGCACA
ATGGAAGACGGTCTGGCACTCGGAGCATGCTCGGATGTCGTCGAGCACGC
TTTGAGCTTCAAGCTAGACTTGGGCAGCGGCGATACGGTCGTCATCCTAC
CGGGATACGAGGGCTTGCTGAGGCGACCCATGTGCGTGGATGTGACAGCT
CAAGCCCTGCTCAACGGGGCGGACAGCGCAGACGGAGGGGGCANNNNN
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protein sequence of EsuBft3431_3a-0001

>EsuBft3431_3 ID=EsuBft3431_3|Name=EsuBft3431_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MGLSRKKRVGLGTGTGMSWKDNNAFADDQANLLFLESMRERIDAMLSSGT
MEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTA
QALLNGADSADGGGXX
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mRNA from alignment at Scaffold_630:373475..374493-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3431_3a-0001 ID=EsuBft3431_3a-0001|Name=EsuBft3431_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1019bp|location=Sequence derived from alignment at Scaffold_630:373475..374493- (Ectocarpus subulatus male Bft15b)
ATGGGGCTCAGCCGGAAGAAGCGCGTGGGGCTCGGAACAGGAACGGGCAT
GTCATGGAAGGATAACAACGCGTTCGCGGATGACCAGGCAAACCTCCTAT
TCTTGGAAAGCATGAGGGAAAGAATCGATGCAATGCTCTCTAGCGGCACA
ATGGAAGACGGTCTGGCACTCGGAGCATGCTCGGATGTCGTCGAGCACGC
TTTGAGCTTCAAGCTAGACTTGGGCAGCGGCGATACGGTCGTCATCCTAC
CGGTAAGAGTACCAGACGTGCTAGCGGCATGCGGCAGCCGGGGGGCATGT
TTTGGCCGACCTAGCCATGTTACGATAGTCGTCGGGATCGTAGCCTGGCC
TTATGCCGTAGCATCCCCGCATAATGACGTTGGGCGATTTTCACGACTGC
TCTGAACGTAGTAAGGCGTCAGATCTAGCGCGTCTAGACTACATCGTTAT
CTTACCGTATTTGGGACGAGACCGGCGTTTGGCACGATAAGTGCGTTGGG
GTGTAGATGACAGGGCCAAGGCTCCCCACATGTTGTCCCTCTTTCGTCTC
CTCCTCAACTCTCGCTCTTGCAAAAAAAATTCCTTAGGGGCCTCTTTTCT
CCTGTCCCCCCTGGGGTGTATGGCCCCATTGAATGTTATGAAGAAAATAA
ATTTCCTACACCCAACGTTTTCAATTTACTCTCACGAGGAACGACACCGA
TGACGACGCGTAGTTTCTCGAGCACGACTAGTCAAAATCATCATAGCGAA
GCACTTGGTGGGCGTGGGTACTGTGTCTTCAAATCGTGTGTGTTGAGTAA
AGAACTCCTCTGCAAACGTTAATCGTGCACGTGCGATAGGATGCACCGTG
GAAAGACGCGATGCAAACAGGAACGCAACCGTCGCGCCGAGCTTCAACAA
CCTTCTCCGGTCGTTTTGTTCAGGGATACGAGGGCTTGCTGAGGCGACCC
ATGTGCGTGGATGTGACAGCTCAAGCCCTGCTCAACGGGGCGGACAGCGC
AGACGGAGGGGGCANNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:373475..374493-

>EsuBft3431_3a-0001 ID=EsuBft3431_3a-0001|Name=EsuBft3431_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_630:373475..374493- (Ectocarpus subulatus male Bft15b)
ATGGGGCTCAGCCGGAAGAAGCGCGTGGGGCTCGGAACAGGAACGGGCAT
GTCATGGAAGGATAACAACGCGTTCGCGGATGACCAGGCAAACCTCCTAT
TCTTGGAAAGCATGAGGGAAAGAATCGATGCAATGCTCTCTAGCGGCACA
ATGGAAGACGGTCTGGCACTCGGAGCATGCTCGGATGTCGTCGAGCACGC
TTTGAGCTTCAAGCTAGACTTGGGCAGCGGCGATACGGTCGTCATCCTAC
CGGGATACGAGGGCTTGCTGAGGCGACCCATGTGCGTGGATGTGACAGCT
CAAGCCCTGCTCAACGGGGCGGACAGCGCAGACGGAGGGGGCANNNNN
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