EsuBft342_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft342_8a-0001
Unique NameEsuBft342_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1226948..1228038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft342_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length68
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft342_8aEsuBft342_8aEctocarpus subulatus male Bft15bgeneScaffold_630 1226948..1228038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_8a-0001EsuBft342_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1226948..1227266 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_8a-0001-exonEsuBft342_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1226948..1227017 +
EsuBft342_8a-0001-exonagat-exon-52072Ectocarpus subulatus male Bft15bexonScaffold_630 1227178..1227622 +
EsuBft342_8a-0001-exonagat-exon-52071Ectocarpus subulatus male Bft15bexonScaffold_630 1227873..1228038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_8a-0001-cdsEsuBft342_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1226948..1227017 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_8a-0001-exonagat-three_prime_utr-13357Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1227267..1227622 +
EsuBft342_8a-0001-exonagat-three_prime_utr-13358Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1227873..1228038 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft342_8a-0001 ID=EsuBft342_8a-0001|Name=EsuBft342_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_630:1226948..1228038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATCCCTCCCCGAGCTGAAAGTATCGGGTATCAGAAAGTATTGCC
GATCCGCAAGACACGCCAGGGCTTTTGGCCGATGCTGGTGCAGTGTTTGG
GCGGGATGGCGCGCGCGCACAAGGGGTGGGGGGCGTATCGCCATGCACCT
ATCGTTTAAGGGACGGCCGGGCACTGTATGCCCGGAGACATGGGAGTGGC
CAACAAAGCAGTGTTTGAGGTCGTCAGCTGTATTTGTACAGGTATTGAGG
TGTGCATTGTTGGAGGATGGGTTTTGTCTCCTTCCTTTTCCCTGTACTCG
CCATCCCGGCAGAAATTTAACGGGACTCTGCTTTTCTTACTTTTTTGGAA
TGCACGTTTTCGTGACGCTGTGTGTTCGACGTTCATTGTTGGAGGTTGGG
TTTTGTCCCATTCCTTTCCCTATATTCGCCAGCCCGGCAGAAATTATCCG
GAATCTGTATTTTTCTTTGTATGCATGTTTTCGTGACGTTGCGTGTTCGA
CGTGCACTATTGGAAGTTGGGTTTTGTTCCCTTCGTTTTCCCGTTTCTCG
CCAGCCCGGCAGAAATTTAACGGGACTCTGTTTTTTTGTTGGCTTTGGAA
TGCATTCTTTCGTGATGCTGCATGTTCGACGTTGATTGTTGGAGGTTGGG
GTCCGCTCCCTTCCTTAATACCCTCCTTGTT
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protein sequence of EsuBft342_8a-0001

>EsuBft342_8 ID=EsuBft342_8|Name=EsuBft342_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MMIPPRAESIGYQKVLPIRKTRQGFWPMLVQCLGGMARAHKGWGAYRHAP
IV
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mRNA from alignment at Scaffold_630:1226948..1228038+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft342_8a-0001 ID=EsuBft342_8a-0001|Name=EsuBft342_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1091bp|location=Sequence derived from alignment at Scaffold_630:1226948..1228038+ (Ectocarpus subulatus male Bft15b)
ATGATGATCCCTCCCCGAGCTGAAAGTATCGGGTATCAGAAAGTATTGCC
GATCCGCAAGACACGCCAGGGTTAGCCGGTATCATCACCTTGCCGTGGCA
CATCCTCTAAAGATTCAAGCTTCTCATATCGGCTGCACCGACTTTCTTGG
TTCTTGCGCCCGCCATCCGCCATCCATAGGAAAGCTTTCATCGGGGTGGT
GTCGTCGGGCTGCAATATGGATACGAGCAGGCTTTTGGCCGATGCTGGTG
CAGTGTTTGGGCGGGATGGCGCGCGCGCACAAGGGGTGGGGGGCGTATCG
CCATGCACCTATCGTTTAAGGGACGGCCGGGCACTGTATGCCCGGAGACA
TGGGAGTGGCCAACAAAGCAGTGTTTGAGGTCGTCAGCTGTATTTGTACA
GGTATTGAGGTGTGCATTGTTGGAGGATGGGTTTTGTCTCCTTCCTTTTC
CCTGTACTCGCCATCCCGGCAGAAATTTAACGGGACTCTGCTTTTCTTAC
TTTTTTGGAATGCACGTTTTCGTGACGCTGTGTGTTCGACGTTCATTGTT
GGAGGTTGGGTTTTGTCCCATTCCTTTCCCTATATTCGCCAGCCCGGCAG
AAATTATCCGGAATCTGTATTTTTCTTTGTATGCATGTTTTCGTGACGTT
GCGTGTTCGACGTGCACTATTGGAAGTTGGGTTTTGTTCCCTTCGTTTTC
CCGGTTCTCGCCATCCCGGCAGAAATTTAACGGGACTCTGCTTTTCTTAC
TTTTTTGGAATGCATGTTTTCGCGACGCTGTGTGTTCGACGTTCATTGTT
GGAGGTTGGGTTTTGTCCCATTCCTTTCCCTATATTCGCCAGCCCGGCCG
AAATTATCCGGAATCTGTATTTTTCTTTGTAGGCATGTTTTCGTGACGTT
GCGTGTTCGACGTGCACTATTGGAGGTTGGGTTTTGTTCCCTTCGTTTTC
CCGTTTCTCGCCAGCCCGGCAGAAATTTAACGGGACTCTGTTTTTTTGTT
GGCTTTGGAATGCATTCTTTCGTGATGCTGCATGTTCGACGTTGATTGTT
GGAGGTTGGGGTCCGCTCCCTTCCTTAATACCCTCCTTGTT
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Coding sequence (CDS) from alignment at Scaffold_630:1226948..1228038+

>EsuBft342_8a-0001 ID=EsuBft342_8a-0001|Name=EsuBft342_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_630:1226948..1228038+ (Ectocarpus subulatus male Bft15b)
ATGATGATCCCTCCCCGAGCTGAAAGTATCGGGTATCAGAAAGTATTGCC
GATCCGCAAGACACGCCAGGGCTTTTGGCCGATGCTGGTGCAGTGTTTGG
GCGGGATGGCGCGCGCGCACAAGGGGTGGGGGGCGTATCGCCATGCACCT
ATCGTTTAA
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