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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | EsuBft342_12 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 201 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-20_003210.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft342_12a-0001 ID=EsuBft342_12a-0001|Name=EsuBft342_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2016bp|location=Sequence derived from alignment at Scaffold_630:1187325..1193755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAGCAGTAGACACCACAGCAGGAAGATCGTCGTGTTGCCCTATCACAGAT TCGGGCTCATTCCTCCTGTTTCTCTCCCGGCTTTTTTGCTGCCCCAGCCT CGCGTCTCTGTACAATTCTCTACCTGAAAGATAGTTTACCCGTGCATGCC ACACGTCCCAACGAAAAACATCATGTCGCGAGGGTCCGCCGACACATGCA GCACGATGATGAAGGGGATCCAGGCGTTGGCGTGGCTCACTCCGCTTGTG ATGCAGTGCCATGCCTTCATGGTGCCAACGCTGCCGGTGTCGGGCAAATT CTCCGGCGTGGTGGCAACATCCAATGGCGCTTCGTCTCCACCAAGCGCTA GGAGGGCGAGGATGGAGATGAAGAGCTGCGACCGTGCTGGCTTCATTCGC GGAGGCGTTCTCGGCGGAGCAGCGGCGATTGGAGTCCTGGGCTCGCCGAG TCCCGTGTCTGCCGCAGGTCTATTCACGAAGGACCGGATGGTGCTGGAAC AAGTTCCCCTGCGCACGGTGATCGGCAAGACTCAGTCCACCAGCTGGGCG GACGTGGCTCCGAAGATCGCCGCGATGCGCGCCGAGGCTCGCGAGCACTT CGCGCAGACCCCCGGCGCTGAAGGCGGCCGCGAGCTTACCGCATTTTCCA ACCAAAATGCTGAGAGCGTAGACGTTACAGTCGGACTGGAGGTTGTGGAT GCCAAGGGTTCTCCCGCCATCTCAAACGGTTTCACCGCCAGCGTAATCTC CCCGCCGGGGCAGTACCTGCGGGACGACCACGACGGGAAGCCCGGTGTGA CTCCCTGGATCTCATTCATGGCCCGACTAGCGAAGGACGGGTACACCATG ACGGAGCCCCTGGCGATGTTCGAGGTCTACTCCGGGCAGGGAGGAGAAGA GTCGGTGACGATGTACACCTCCGTGAACGGTCCGGCCAAGTAGAGCACGC CCGCGCCTCTTTAGTGCAGGTGCTGGCGTCGTGAGGGGCTAGTAGCTGAG CAGACGGAATTAGAACCGTCGCCTTGAATGTTTCGTAGAGTGAAAACAAT ATTTCTCGGGGGGTCGATTCGAGCGGTCGCCAAACGGTAGGTGTCCCGGT ATAGTGCCGGTATCTTTTCTTGACCCGGCCCTTAATAGTGCGAAACCGGC ACTGTTGTGGATTGCCCACTATGATGCCGGTTCACGCACTTTCGTAGCTC TCAATAGTGCCGGTTCAGACCACACACAGCCTTCTATTTCGCGTCTAGGG CCTTACCACACCAACAGGATTCGGAGACGGTTTACCCTCGAGCTACAAGA CTGACTCGTTTCCTGCCCGTGCGAACTCGTGACGGCTTCAAGTGTCATGG TTTACCGATCGACCAAATTCCACCACAGCCATTGTAGCCAATACGTCGGG AATTCAGTAGCAGTGAGGCGGGCGAAGGGAAGGATGGTGGTAGTGACAAA GGATGTGGAAAGGGAAGAATAGCGAAGGATAGCAGTGATGATGGAGGAGG AAAATATCGCGTTGGAGGGAACAGAGTTTCGAGCGAGATCGTGTTCCTCA CAACGAACGCGCCGGGTGCAGAGTCTAGAGAGATGAACGCCGGAATATAG TGGAATTATTCGTGATGAGAGTAAAATGTTGTGGTGGTTAAACACAAGGA CAAGGAAGGAAGGATGAAAACACGCCGAAACATTTGCGTGTGCAACCTCG TCTGTTGCTACCGTTTCTGCCTTGGGATCAGAACAGCTTAGCCTCCTCCA GGATACCCTCTCACAGGGTCCCAGATCAGGGCCTTTAGAAACACTTATTT CCTGTTTTCAACCGCACTGAGGCTGACGTTTATCGTTGGTCACCCGGTTA GAGGTCGATGCTAATACTACACAGAGCCATCGACGCAATATACAGGCCTC ACAACACGGTAGGGGTACGACCCGTGCTGCTGCTGAAGATCCTACCAGCT CTACGCAGAGGGCCAGGGGGTAGATCTGCATAGCTGCACGGCAGCGTGAC GCTTCTTTTTTGACGT back to topprotein sequence of EsuBft342_12a-0001 >EsuBft342_12 ID=EsuBft342_12|Name=EsuBft342_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MPHVPTKNIMSRGSADTCSTMMKGIQALAWLTPLVMQCHAFMVPTLPVSG KFSGVVATSNGASSPPSARRARMEMKSCDRAGFIRGGVLGGAAAIGVLGS PSPVSAAGLFTKDRMVLEQVPLRTVIGKTQSTSWADVAPKIAAMRAEARE HFAQTPGAEGGRELTAFSNQNAESVDVTVGLEVVDAKGSPAISNGFTASV ISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGG EESVTMYTSVNGPAK back to topmRNA from alignment at Scaffold_630:1187325..1193755- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft342_12a-0001 ID=EsuBft342_12a-0001|Name=EsuBft342_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6431bp|location=Sequence derived from alignment at Scaffold_630:1187325..1193755- (Ectocarpus subulatus male Bft15b) CAGCAGTAGACACCACAGCAGGAAGATCGTCGTGTTGCCCTATCACAGAT
TCGGGCTCATTCCTCCTGTTTCTCTCCCGGCTTTTTTGCTGCCCCAGCCT
CGCGTCTCTGTACAATTCTCTACCTGAAAGATAGTTTACCCGTGCATGCC
ACACGTCCCAACGAAAAACATCATGTCGCGAGGGTCCGCCGACACATGCA
GCACGATGATGAAGGGGATCCAGGCGTTGGCGTGGCTCACTCCGCTTGTG
ATGCAGTGCCATGCCTTCATGGTGCCAACGCTGCCGGTGTCGGGCAAATT
CTCCGGCGTGGTGGCAACATCCAATGGCGCTTCGTCTCCACCAAGCGCTA
GGAGGGCGAGGATGGAGATGAAGAGCTGCGACCGTGCTGGCTTCATTCGC
GGAGGTGCTGTCTTTGTTTTTTTGGTGTCACATTGCTCCTGTGTTGCATG
GCCTCTGTCTAGCATCGGTCGTTCTCTGCCGACGCGCCAACGTCTCTTGC
ACAGTAGCTGTAGACTGCTTGCACGATGTTGACCCTCTGTCTACTGCTGT
ACCCGCCGAAATGTGGCGGCGCTGCTCTGCTGTGTAATCTTCCGTAAGCG
AACTTTTGGAAGAGCATACAAGTACTGTACGTGTAGTGTGCAATACATGT
ACTTCCCCCCTTTGGATTGATCTTGAAGGCTCGATTAGTTGGCAGGAACA
GCAATGACCGTGTTAATTATAGCGGCGTTGGGGTGGCCTCGTTGAGAGCT
TTCGTAAGATGAATGACTTGATTTCGGCATCCTCTTCATTATGGAGTTTG
ATCGAGTTTTGAAAATCGGTCCAGGGGTATAGACTATTAGTGTGTTAGGC
AATCTACGGTGTGCCTTGTGCACGAATGAACAGCCGGGCCTAACTTTCCG
ATGATGCATTGGATGATAATGGAGAAAAGAGTAGATAACATTCACGGGCC
TATGCACACGAATGTTATTGACTAGCGAGTGCCATTACGCGGTTATTTTT
TGGATGAATAAGTTGTTGCACGCAAGTACAACATTGAATAGATGCGAATT
TGCTGTCACGGCGGTGCCTTTGGGCGTGTTTTCCTGTTGATAGTGCACGC
ATGTAGCCCACATTATCATGACTTTTGATTATGTTCCTCCCGGTTGCAGC
CTTAGAAACACGCAAACCAACACCAACAGAAGAAGAAAAACGAAGCGACA
CTCTCAAACACTAGACCAACGCAGGGAGCTGCGGCATTTGTGACCGTGAT
GGCACTGGCGCAGGTTTGTGGCTTGTGAGTGCGTTTGCATGGCGAAGACT
AGATTACCTTCCTTTCCTGTCCAACCTCTTTTGCGCTGTTGTTACGAGCT
GTACATATATGTGTTCATTCCATATCCGCAATGTGTGTGTCTTACGAACT
CTGAAGGGTGCTGCTTGTTGATCTCTCGGCGTCTCCTCTCTCTTTCGCGG
TCGCGCACACATCGCCCTCGTGTGGCAACGTTGCAACCCGGCCGTGTTGC
AAACTGTCAGTAAGTGGTGTCGACATCTGTGAATGCTCATGTATCAGCGC
GGGCGGAAGCGTGCGCGGGCCTCAAGCGGCCAGACTCGTACAGCAGTGCA
GCTCGTGGATCGATCAGAACAACATAGCACGCCTCGACGTAGCTCAATAC
ACAAGTCCTTGATATACCACCTATACTCTGCGCCAGGCAACCACAAACAC
GCAGAGACACCTTTTCTTTTCATAGTTTTTTTACCACGCAGCGAGATATT
CCGGGAAAAAACGGGAGATGCGAATTTATTGCTTTGACGAATGTATTGTT
CGGATCGTTCTTGTGTCGCCCACTTCATCAACCCAATACACAACTTTCAA
TACGGCCACAGGCTATCCAGCCTTTCGTCTATGGCTTCCTCCATCTCTTC
GTCGTCATATTCCGCCATAATGTCCATGCCTGGCAAGGGCAAATCTTTGC
CGTGTGCCCTCCTGTCTGTTCATTTCCGCCTCTACACCGGCCTCCCTCGC
TTCCAGTCTGCAAGATCCCGTTCAAATGCTCGAGGCGCTCTGAGGCACTC
ATCGAGTCCAGGCGGGCCTGGTCCATGGTGCGCAACCTGTCAATCTCCTG
TTGCTGTTGCTGCTGAAGGGCATGTTCCATCCCGCGCAACCTGAGTATCG
ACTGTTGCTGTCGCTGATAACTCGCGCCAATTCTCTGATGATATTCCCGG
TTCTCTGTCCTTTCACCCGCTGGTCAATGTGTGGATAGGGCGCCGCCTGG
GATCGGCGTGCACTAACGCTTCCCTACCTCGCTGATGCTGTGTTGTTCTC
CCGGCGGTAGCTGTGTTGTTCTCCTCCCGCTGAAGTTGTGTTGTCCTCCC
GGCGGGAACTATTACATGCTGTTTCCTTACCGCGTATTGGGGGGGGTGCA
ACAGTCTCCGGTACCTCGGACGTTTTTCCTCTCCACAATTCCCCGGGGGT
GGGGGGAGCGATCTCCTACGAATTTAGGGCACGTATGCCTGTGAAGCACG
GCCATCTGTTGCCGAAGCACGACCAAGCCGGTGTGACGAAGAGCGCGCTA
TTTTTCTTCTTCCTCAGTAGCGAAGAGATCGTAAATCAGTGCCCTATAGA
TCTCGTTCTGGGTACAAAGGTGGGTTAGTTTGGCTTCCCGAAAATAAAGT
TTCGGGGCCCCTGTATCCTACGGCGCAACTTTGGCCCATATTTAGAGCCT
TTTTTTTTCCCTCTGGAGACGAAAGGAAAATAACGGTCGAGCTTTGCGCT
CCGCGGCTCATGGTTATACTGTCGGGCGGGGCGGCTGCGATATCATCGGC
GGCATCTGAATCAACTTTGGGGCATTCCGTTCCGGGGCATTTGTTCTCGT
GTTGCAGAAAAAGGTATTGCATTTCAAAGTGGAAGACAAGCAATGCACAG
CTGTCAAGTCGCTCGACACGACGTGAAGATCACTTCTGTAAGAAGTTGAC
GGTCTTTCACGGTTCTTTGGAAATATGCAATGAAACACAGAATACTGCTG
TTCATTACAAGGCGGTGGATCTTTCGCGATCACGCTTGTTGGCATACATT
GTCATTTCCGAAGCCGTGCGTCGTTGGCAATGAATAATGACGCCCATACG
CCAGCCAGCCTTTCATTCATTTTCGCCTATTCCGGGCAAGGAGGAAATCT
GGCCGTGGACTCAGTGCAGCTGCCCCTTTGCCGAGCTTACGCCCTTCCTT
GCGCTTGTCATCCGCGCCCTGTTTGTTGCTGCTCAGGCGTTCTCGGCGGA
GCAGCGGCGATTGGAGTCCTGGGCTCGCCGAGTCCCGTGTCTGCCGCAGG
TCTATTCACGAAGGACCGGGTGAGTCGTGCCGAAACCTCTACATACCTAG
CTGCAACAGTTGTTTCCGTAGTCGTGACGTTTTCGGGGAACCTGTGCGTA
GATACCCTGGGAAATTCCATGGGCGCCTCGCTTCGGGCCGGCGGTATAGG
TTACCATACAGGTGGAAGGTGAATATGGTGTAGGTTGGGGTGGGGGGGGG
TGTTTTCATAGTCGTGCATGCCGTAGTCGTGAGACCATTGACCTCGCATC
CCTACAAAGCCGGGACGGAGCACGCCAGGTTCTCACCAGACCAGGATCTC
ACATCACCAAGCGCAAAGCGCCGTGAGATATTCGGCGAGTCGCATGAAGG
GTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTG
CGTTCGGATGACAGCCGCGTATGACTTACAGTATTTTCTGGTGCTTTCAC
TTCCAGAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGGGTGCTTGACC
ATTTTAACACAACGTGGTGCGACCATCCCCCTTGTACGGAGTGAGGGTTC
TCGACCCCGCACAACATGATCTACTCGACCACCATTATGGTTACCGCCAA
AAAAAAAACGGAGGTAAAAAAAAAGAACGGCAACCTGGTTGCCGAGTTCA
CAACGTGAATTGTGGGGGGGGGCAGCTTGTTTAGTTGGTTCGGGGGGGGG
CTACCCCCAACACGTGTACCTGCCAGACTGAAACATGGTAACGCAACGCA
TTGTACACACATACGGTGCGCCCTTGACTCACTGCAAAGGCAAAATTGCA
ACCCTTGAAACATATCACGACGCCTTGGTTTCCCTGCGAAGATGGTGCTG
GAACAAGTTCCCCTGCGCACGGTGATCGGCAAGACTCAGTCCACCAGCTG
GGCGGACGTGGCTCCGAAGATCGCCGCGATGCGCGCCGAGGCTCGCGAGC
ACTTCGCGCAGACCCCCGGCGCTGAAGGCGGCCGCGAGCTTACCGCATTT
TCCAACCAAAATGCTGAGAGCGTAGACGTTACAGTCGGTAAGGACTACTT
GCTGTGGTGTTTCTTGTCACCGTAAAGGTTGTGTCTCATACCACCATCCC
TCCATTTTCCGAATGCCGGAGTGATCAAGGGTCGACTAAAAGCGTCTGGG
GCTAATCCACCACACGCGTGGTTCCGCTAACATTGAAGGTTTTCCATGCT
GCCAACGTTACGCGTCGCGTCGCATGAGAATTGACTAGGCTGCTATCCCC
GGTTAACTCGGTAGACTCTCTTCCGACCGAAAATTTTGATACCCCCCTCG
CGGAAGTACATGTAGCCCATGCGGCAGGTGCAGTTTGTCAGGCCTGTGAG
TCGATCCCGAGGGTTGCAACCCCCCCACTTCCCCAACTAGAGGTATCTCA
ATTGCGTCCCCCCCTCTCCTGGACTACTCTCCTACGGAGCCACGGAATTT
TGGTTCTGTTTTTCACTACACGTAAACAATACCGGGGCGTTCTTTTTCGA
GAGACCGTGCGCACTTTGTAGCAAGCGCACACCCTTTGCCGTTTTGGAGG
TGTCTGACGGTACAAACCTGCTGCTTGTTCGTGGCCCGGAATTGCGTGCT
ACTGCTGTTGCACGAGGAGGTATGCATTGATTGCCGCAGCTATACCGCAT
AGTGGTGGTAAGCACAAAGCAGCCATGACATTTTTCGGAAGTGCAGCCGT
TATGTCGACGTACCCCAAGACGCGAACGTTCTCCCCTCTCGCCGATGACT
TGCGAAAAGCTAAAAAACAGCGATTGGCTCTAACTGCACCGAACCCAGGA
CTGGAGGTTGTGGATGCCAAGGGTTCTCCCGCCATCTCAAACGGTTTCAC
CGCCAGCGTAATCTCCCCGCCGGGGCAGTACCTGCGGGACGACCACGACG
GGAAGCCCGGTGTGACTCCCTGGATCTCATTCATGGCCCGACTAGCGAAG
GACGGGTACACCATGACGGAGCCCCTGGCGATGTTCGAGGTCTACTCCGG
GCAGGGAGGAGAAGAGTCGGTGACGATGTACACCTCCGTGAACGGTCCGG
CCAAGTAGAGCACGCCCGCGCCTCTTTAGTGCAGGTGCTGGCGTCGTGAG
GGGCTAGTAGCTGAGCAGACGGAATTAGAACCGTCGCCTTGAATGTTTCG
TAGAGTGAAAACAATATTTCTCGGGGGGTCGATTCGAGCGGTCGCCAAAC
GGTAGGTGTCCCGGTATAGTGCCGGTATCTTTTCTTGACCCGGCCCTTAA
TAGTGCGAAACCGGCACTGTTGTGGATTGCCCACTATGATGCCGGTTCAC
GCACTTTCGTAGCTCTCAATAGTGCCGGTTCAGACCACACACAGCCTTCT
ATTTCGCGTCTAGGGCCTTACCACACCAACAGGATTCGGAGACGGTTTAC
CCTCGAGCTACAAGACTGACTCGTTTCCTGCCCGTGCGAACTCGTGACGG
CTTCAAGTGTCATGGTTTACCGATCGACCAAATTCCACCACAGCCATTGT
AGCCAATACGTCGGGAATTCAGTAGCAGTGAGGCGGGCGAAGGGAAGGAT
GGTGGTAGTGACAAAGGATGTGGAAAGGGAAGAATAGCGAAGGATAGCAG
TGATGATGGAGGAGGAAAATATCGCGTTGGAGGGAACAGAGTTTCGAGCG
AGATCGTGTTCCTCACAACGAACGCGCCGGGTGCAGAGTCTAGAGAGATG
AACGCCGGAATATAGTGGAATTATTCGTGATGAGAGTAAAATGTTGTGGT
GGTTAAACACAAGGACAAGGAAGGAAGGATGAAAACACGCCGAAACATTT
GCGTGTGCAACCTCGTCTGTTGCTACCGTTTCTGCCTTGGGATCAGAACA
GCTTAGCCTCCTCCAGGATACCCTCTCACAGGGTCCCAGATCAGGGCCTT
TAGAAACACTTATTTCCTGTTTTCAACCGCACTGAGGCTGACGTTTATCG
TTGGTCACCCGGTTAGAGGTCGATGCTAATACTACACAGAGCCATCGACG
CAATATACAGGCCTCACAACACGGTAGGGGTACGACCCGTGCTGCTGCTG
AAGATCCTACCAGCTCTACGCAGAGGGCCAGGGGGTAGATCTGCATAGCT
GCACGGCAGCGTGACGCTTCTTTTTTGACGT back to topCoding sequence (CDS) from alignment at Scaffold_630:1187325..1193755- >EsuBft342_12a-0001 ID=EsuBft342_12a-0001|Name=EsuBft342_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_630:1187325..1193755- (Ectocarpus subulatus male Bft15b) ATGCCACACGTCCCAACGAAAAACATCATGTCGCGAGGGTCCGCCGACAC ATGCAGCACGATGATGAAGGGGATCCAGGCGTTGGCGTGGCTCACTCCGC TTGTGATGCAGTGCCATGCCTTCATGGTGCCAACGCTGCCGGTGTCGGGC AAATTCTCCGGCGTGGTGGCAACATCCAATGGCGCTTCGTCTCCACCAAG CGCTAGGAGGGCGAGGATGGAGATGAAGAGCTGCGACCGTGCTGGCTTCA TTCGCGGAGGCGTTCTCGGCGGAGCAGCGGCGATTGGAGTCCTGGGCTCG CCGAGTCCCGTGTCTGCCGCAGGTCTATTCACGAAGGACCGGATGGTGCT GGAACAAGTTCCCCTGCGCACGGTGATCGGCAAGACTCAGTCCACCAGCT GGGCGGACGTGGCTCCGAAGATCGCCGCGATGCGCGCCGAGGCTCGCGAG CACTTCGCGCAGACCCCCGGCGCTGAAGGCGGCCGCGAGCTTACCGCATT TTCCAACCAAAATGCTGAGAGCGTAGACGTTACAGTCGGACTGGAGGTTG TGGATGCCAAGGGTTCTCCCGCCATCTCAAACGGTTTCACCGCCAGCGTA ATCTCCCCGCCGGGGCAGTACCTGCGGGACGACCACGACGGGAAGCCCGG TGTGACTCCCTGGATCTCATTCATGGCCCGACTAGCGAAGGACGGGTACA CCATGACGGAGCCCCTGGCGATGTTCGAGGTCTACTCCGGGCAGGGAGGA GAAGAGTCGGTGACGATGTACACCTCCGTGAACGGTCCGGCCAAGTAG back to top
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