EsuBft342_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft342_11a-0001
Unique NameEsuBft342_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1193931..1196785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIR6
ProteomeIdEsuBft342_11
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSSF51905
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsG3DSA
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length77
Hectar predicted targeting categoryother localisation
Evalue8.01e-48
EggNOG OGsCOG1233@1|root,KOG4254@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionall-trans-retinol 13,14-reductase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft342_11aEsuBft342_11aEctocarpus subulatus male Bft15bgeneScaffold_630 1193931..1196785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_11a-0001EsuBft342_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1195700..1196785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_11a-0001-exonagat-exon-52089Ectocarpus subulatus male Bft15bexonScaffold_630 1193931..1194099 +
EsuBft342_11a-0001-exonEsuBft342_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1195609..1195854 +
EsuBft342_11a-0001-exonagat-exon-52091Ectocarpus subulatus male Bft15bexonScaffold_630 1196114..1196396 +
EsuBft342_11a-0001-exonagat-exon-52090Ectocarpus subulatus male Bft15bexonScaffold_630 1196708..1196785 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_11a-0001-exonagat-five_prime_utr-8465Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1193931..1194099 +
EsuBft342_11a-0001-exonagat-five_prime_utr-8466Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1195609..1195699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft342_11a-0001-cdsEsuBft342_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1195700..1195854 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft342_11a-0001 ID=EsuBft342_11a-0001|Name=EsuBft342_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=776bp|location=Sequence derived from alignment at Scaffold_630:1193931..1196785+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGTGATCTCACATGCCTCGGTGTTGGTGGTACGGCTGTACCTCTGC
CCTCTGCCTATCGTCCTGACCTTCTCTCGGTATCTCGCTTCCCTGTCCTG
CACAAGAACAAGAGCAAGCCGTCGCACAGGCACACCGGTCACGTGAGCAA
TATCCCGGGCGCAGACAAGCAAACGTCCGTTCACCTCGTGTGAGCGGGGG
GACAAGAAATTGGCCCATACCAGAAAACAACCTGAGAACGCGGGCCCGCC
AATTTTCGAGATGCCCTCGGCCAGGGCAGATGACAAGGCCGCGGCAACGA
GGTTCGGCTTATGCGCCGCGGGGCGGAACTCGCTCGTGTTCCTCGCCTTG
TCGGTCTTCGCGGGGCGAGGGTGTCTGTCTTTCGTCCCGTTTCCGTGCCC
GCCTACATCAGCCAGCAGCAGCAGCAGCGCTGGTGCCCGAAGCGGGGCGT
TCGGCCGACAAAGTCGGGTCCGGGGGGTGAGAGGGGACCACATGGGGCCT
GCTGACGACGGTAGGCGTGAAAGGACACCATCGTGTCGGCGTCCTACGGA
GGGTTTCGTGCTAGGGGCGGCTGGCGTCGGAGCAGCTGGAGGTGAAGGAG
TCGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAG
AAGGAGGAGGAGAAGGAGAAGGAGGAGGAGAAGGAGGTTGATGTGGTGGT
GATTGGGGCCGGCATCGGTGGCCTCACCTGCGCGGCGCTGCTGGCCCAGG
TGAGACGCGGCATGAAAAGTGTGTAG
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protein sequence of EsuBft342_11a-0001

>EsuBft342_11 ID=EsuBft342_11|Name=EsuBft342_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=171bp
MPSARADDKAAATRFGLCAAGRNSLVFLALSVFAGRGCLSFVPFPCPPTS
ASSSSSAGARSGAFGRQSRVRGVRGDHMGPADDGRRERTPSCRRPTEGFV
LGAAGVGAAGGEGVEEEEKEEEKEEEKEEEKEEEKEKEEEKEVDVVVIGA
GIGGLTCAALLAQVRRGMKSV
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mRNA from alignment at Scaffold_630:1193931..1196785+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft342_11a-0001 ID=EsuBft342_11a-0001|Name=EsuBft342_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2855bp|location=Sequence derived from alignment at Scaffold_630:1193931..1196785+ (Ectocarpus subulatus male Bft15b)
CAGCAGTGATCTCACATGCCTCGGTGTTGGTGGTACGGCTGTACCTCTGC
CCTCTGCCTATCGTCCTGACCTTCTCTCGGTATCTCGCTTCCCTGTCCTG
CACAAGAACAAGAGCAAGCCGTCGCACAGGCACACCGGTCACGTGAGCAA
TATCCCGGGCGCAGACAAGGTGCCAGTAACCAATGTTGGAGTACGTCAGC
GGGTGGCAACAGATAAGATATCTGCTGTTTGACACCTCGCCCAACCAGCA
CATAGCAGTCGTGCACGACTAACTCCACTGGTACGAATGTGGTATGGCGA
AAGGAAGATCGACAAAACGTGGTCTGATCATGATCTAAAAAATGATAATC
TCGCTGCGACATGCGTCTCAGAACGCGGTGCGATATCCGAACTCTGTGTT
GTTCTCCCCTGTTGTTGCCGGATTTGTCAGGAAAAATAAATACAGTCGAC
CCCGCTTTCAAGACACACCACGGTTTCCCCCCAAAAAAGTGTCTTGAACG
CGGGGCAGTGTCTTTCAAATTCCGGGGCCACTAACGCACCATCCCCGGGG
CCAATGAAGGCGAAACATATGTCAAAAGGTGCGCATTCGCAGCAGAAAGG
CGACCACAAGAGGTGTTGCTTGAAACCTACGATACAAGGTGATTTCAAGG
TCGCAACCACTGCTGCTATTGTGCTGCAATACATACTTGCATACCATCGT
TTGAATTTCCCCGTACTGTGCCACCAAAACGCTGAAAGCGATGTTGTTCT
ACGAGCTACGCATCGTACATGTACACGACGGTAGTGCGCTGGTGTTGATA
TGGGCTTAATTATTTGCTTTTTTTTTTTTTTAAGCGTTGTCCTCCCCGTG
AATATCTTGCCCAAGATCTCGCTACCACACCTGAGAAATATCGAAGGTTG
TAAAACGACACTAGGAAAATGTAGGTTACGCAGAAACACAGAGATCAAAA
ATGTCGGGAAAGACTACCTACCCGTTCGAGATATACCCACAGTCGAACGG
GGTGCGGTGGAGTCTTTTCAGTGAGTGCGCCGACGGTCCTCGGTTTCCCA
ACCCCCAATTCTACAATCTACACACGAAATCGATGTGTAGGCAGCTGTTG
ACGTTCTTTGAAAATCGCTACGAATCTGCGCATAAATGTCCAGATTTCAC
TTTGTGCAGACTTCCCTTCGAACCTGATAAGAGCACCATCTGAAAATAAC
TACCGTATTATTCAAGACGGAACCGTGAGGAACCTGATGTCATGACGGTT
GGCACCGTTGTTTGATGTGATCTGCGTGGTGATCAGGAACTGTACGACCA
CTCTGTTCTTTAGTCTCGGCTCTCTGTTGAATGTCAGCCGCAACACAGCA
GTCACCTTTTAGAGTGCCGCGAAGGTCAACCCGACCTCATGTTCTCCTCC
TGTTTCGTCGCTAGAATAATGTTGCATCGCGGACTTCTCCCCTTAGACTA
TTCGCTCAAGGTGGTTGTTTTTTCCTACGGAAACGCGATCGTCAGCGGTC
GTGCTTGGCTGTGAATTCTTTGCTTGCCAGAAAGCCCGCAATCCCTCGCA
TGGTACACCGCCCATAACCACCCCATCTCTCGGCACACGACGGCAAGTTT
CGACAGAATCTATTGCGACCTCGAACCCATACAGTGCTGACGATTGTTTC
CCGTTTGCTGTTTGCTCCACATTTACAGCAAACGTCCGTTCACCTCGTGT
GAGCGGGGGGACAAGAAATTGGCCCATACCAGAAAACAACCTGAGAACGC
GGGCCCGCCAATTTTCGAGATGCCCTCGGCCAGGGCAGATGACAAGGCCG
CGGCAACGAGGTTCGGCTTATGCGCCGCGGGGCGGAACTCGCTCGTGTTC
CTCGCCTTGTCGGTCTTCGCGGGGCGAGGGTGTCTGTCTTTCGTCCCGTT
TCCGTGCCCGCCTACATCAGCCAGGTACTCCGCGGCGGTGTCGGCTGTGT
TGATGTGGCCCACGGGGTCTCTCGTTGTGTGGTTTTCAGTTGGAGTGCTC
AAGCGGTTGCGCGTCGGAGTGAGCGGTGACCGCGTGCCGCTTTGGTTACT
TGTTGACTACCGCTCGCTGTGCTCGAACTGTACGCGATTCGACAGAATGA
AGCCATAGCCGTACAAGCCGTTCTCGCAGTGTTGCGCCACCAATGCTCCT
CTGCTGAACGTCACCGTTCTCTCAATTTCGCAGCAGCAGCAGCAGCGCTG
GTGCCCGAAGCGGGGCGTTCGGCCGACAAAGTCGGGTCCGGGGGGTGAGA
GGGGACCACATGGGGCCTGCTGACGACGGTAGGCGTGAAAGGACACCATC
GTGTCGGCGTCCTACGGAGGGTTTCGTGCTAGGGGCGGCTGGCGTCGGAG
CAGCTGGAGGTGAAGGAGTCGAGGAGGAGGAGAAGGAGGAGGAGAAGGAG
GAGGAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGAAGGAGGAGGAGAA
GGAGGTTGATGTGGTGGTGAGCCAGTGGCGTACTGCTGACGGAAGAAAGG
AGATGCCCGTAACGTTGGCTAGGGAACGGCTCCTGCTGCTTCTCAGGCGC
AGAAGATGTCGGCATAACGGTGTAGCGGTTGGCCCGCTGGTAGCCGTGGG
CTGACGAGGAGGTGCCGTTGGCCTTGTTTCGAGAGCTCCTTCTGGCGGCA
ATATTTGTTTTCGGGCTGGGAATGCACGTTGAACATATTATCTGGTGTGG
TCGAGAAACAGACACCGGATGACGCGTCGGGGGAAGGAACGACAAATTAT
GACAGTGTACCCGTTTCGCGCTGGCAGGTGATTGGGGCCGGCATCGGTGG
CCTCACCTGCGCGGCGCTGCTGGCCCAGGTGAGACGCGGCATGAAAAGTG
TGTAG
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Coding sequence (CDS) from alignment at Scaffold_630:1193931..1196785+

>EsuBft342_11a-0001 ID=EsuBft342_11a-0001|Name=EsuBft342_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=516bp|location=Sequence derived from alignment at Scaffold_630:1193931..1196785+ (Ectocarpus subulatus male Bft15b)
ATGCCCTCGGCCAGGGCAGATGACAAGGCCGCGGCAACGAGGTTCGGCTT
ATGCGCCGCGGGGCGGAACTCGCTCGTGTTCCTCGCCTTGTCGGTCTTCG
CGGGGCGAGGGTGTCTGTCTTTCGTCCCGTTTCCGTGCCCGCCTACATCA
GCCAGCAGCAGCAGCAGCGCTGGTGCCCGAAGCGGGGCGTTCGGCCGACA
AAGTCGGGTCCGGGGGGTGAGAGGGGACCACATGGGGCCTGCTGACGACG
GTAGGCGTGAAAGGACACCATCGTGTCGGCGTCCTACGGAGGGTTTCGTG
CTAGGGGCGGCTGGCGTCGGAGCAGCTGGAGGTGAAGGAGTCGAGGAGGA
GGAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAGG
AGAAGGAGAAGGAGGAGGAGAAGGAGGTTGATGTGGTGGTGATTGGGGCC
GGCATCGGTGGCCTCACCTGCGCGGCGCTGCTGGCCCAGGTGAGACGCGG
CATGAAAAGTGTGTAG
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