EsuBft3423_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3423_3a-0001
Unique Name	EsuBft3423_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:590914..591789 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_012421-tr
ProteomeId	EsuBft3423_3
Protein domains	SSF56672
Protein domains	G3DSA
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	876
Hectar predicted targeting category	other localisation
Evalue	2.63e-55
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3423_3a	EsuBft3423_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 590914..591789 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3423_3a-0001-exon	EsuBft3423_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 590914..591789 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3423_3a-0001-cds	EsuBft3423_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 590914..591789 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3423_3a-0001	EsuBft3423_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 590914..591789 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:590914..591789-
coding sequence from alignment at Scaffold_630:590914..591789-

spliced messenger RNA

>EsuBft3423_3a-0001 ID=EsuBft3423_3a-0001|Name=EsuBft3423_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=876bp|location=Sequence derived from alignment at Scaffold_630:590914..591789- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGTA
CATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACCTAAAAC
TGTCGGAAAACACGTTCCAAGCTTTGCAAGCAGCAAGGCTCACCTTGAAA
CCATCCAATGTACAATTCGGACCACAAGAGGTGAAATTCTTGGGACACAT
TTTCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAGGCGATAC
TAGATATACCAACCCCAACAAACATCAAAGAGCTGCGATCAGTGCTGGGG
ACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAATCACCGC
ACCCCTGGTTGACTTCACGGAAAAAGAGGCAATGAAGTCAGTGGCAAAAC
GTTGGGGACCGGAGCACAATAAAGCGTATGCGGAAGCAAACAAATTGCTC
ACCGCAGCTCCTGTGTTAAACTTTCCGGACTTTTCTAAAGAATTTGTAAT
TCATGTCGATGCTTCTAATGTTGGTACAAGAGCATTCCTAGCCCAACAAG
ATGGTGACGACCTGAAGATCATAGCATACTTTGGCCAGCGTTTCAACAAA
AGCCAACTGCATTATTACTCAGCAACCATGAAAGAATGTTACGGTGTCGT
TCTAGCAATTCAGCATTGGCGCCCTTATCTGTGGGGCAGACATTTTACGT
GCGTTACTGATCATGCCGCGTTGCGTTATCTCTACACGATGCAATACACG
TCAAACATGCTTACACGCTGGGCGATAGCGCTGCAATCATTCGACTTCAC
GGTAAAACATAAACCAGGAAAGTTGCATGTAGTGCCTGACACGTCATCGC
GTCTTTTTGTGTTTGTGTTTGAATAA

protein sequence of EsuBft3423_3a-0001

>EsuBft3423_3 ID=EsuBft3423_3|Name=EsuBft3423_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=291bp
MALAFAHFGPKSGLLVYMDDLICCSSTWEGHLKLSENTFQALQAARLTLK
PSNVQFGPQEVKFLGHIFSSDGIRLGEDRIKAILDIPTPTNIKELRSVLG
TVNYVRKFIPNLATITAPLVDFTEKEAMKSVAKRWGPEHNKAYAEANKLL
TAAPVLNFPDFSKEFVIHVDASNVGTRAFLAQQDGDDLKIIAYFGQRFNK
SQLHYYSATMKECYGVVLAIQHWRPYLWGRHFTCVTDHAALRYLYTMQYT
SNMLTRWAIALQSFDFTVKHKPGKLHVVPDTSSRLFVFVFE

mRNA from alignment at Scaffold_630:590914..591789-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3423_3a-0001 ID=EsuBft3423_3a-0001|Name=EsuBft3423_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=876bp|location=Sequence derived from alignment at Scaffold_630:590914..591789- (Ectocarpus subulatus male Bft15b)
ATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGTA
CATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACCTAAAAC
TGTCGGAAAACACGTTCCAAGCTTTGCAAGCAGCAAGGCTCACCTTGAAA
CCATCCAATGTACAATTCGGACCACAAGAGGTGAAATTCTTGGGACACAT
TTTCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAGGCGATAC
TAGATATACCAACCCCAACAAACATCAAAGAGCTGCGATCAGTGCTGGGG
ACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAATCACCGC
ACCCCTGGTTGACTTCACGGAAAAAGAGGCAATGAAGTCAGTGGCAAAAC
GTTGGGGACCGGAGCACAATAAAGCGTATGCGGAAGCAAACAAATTGCTC
ACCGCAGCTCCTGTGTTAAACTTTCCGGACTTTTCTAAAGAATTTGTAAT
TCATGTCGATGCTTCTAATGTTGGTACAAGAGCATTCCTAGCCCAACAAG
ATGGTGACGACCTGAAGATCATAGCATACTTTGGCCAGCGTTTCAACAAA
AGCCAACTGCATTATTACTCAGCAACCATGAAAGAATGTTACGGTGTCGT
TCTAGCAATTCAGCATTGGCGCCCTTATCTGTGGGGCAGACATTTTACGT
GCGTTACTGATCATGCCGCGTTGCGTTATCTCTACACGATGCAATACACG
TCAAACATGCTTACACGCTGGGCGATAGCGCTGCAATCATTCGACTTCAC
GGTAAAACATAAACCAGGAAAGTTGCATGTAGTGCCTGACACGTCATCGC
GTCTTTTTGTGTTTGTGTTTGAATAA

Coding sequence (CDS) from alignment at Scaffold_630:590914..591789-

>EsuBft3423_3a-0001 ID=EsuBft3423_3a-0001|Name=EsuBft3423_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=876bp|location=Sequence derived from alignment at Scaffold_630:590914..591789- (Ectocarpus subulatus male Bft15b)
ATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGTA
CATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACCTAAAAC
TGTCGGAAAACACGTTCCAAGCTTTGCAAGCAGCAAGGCTCACCTTGAAA
CCATCCAATGTACAATTCGGACCACAAGAGGTGAAATTCTTGGGACACAT
TTTCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAGGCGATAC
TAGATATACCAACCCCAACAAACATCAAAGAGCTGCGATCAGTGCTGGGG
ACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAATCACCGC
ACCCCTGGTTGACTTCACGGAAAAAGAGGCAATGAAGTCAGTGGCAAAAC
GTTGGGGACCGGAGCACAATAAAGCGTATGCGGAAGCAAACAAATTGCTC
ACCGCAGCTCCTGTGTTAAACTTTCCGGACTTTTCTAAAGAATTTGTAAT
TCATGTCGATGCTTCTAATGTTGGTACAAGAGCATTCCTAGCCCAACAAG
ATGGTGACGACCTGAAGATCATAGCATACTTTGGCCAGCGTTTCAACAAA
AGCCAACTGCATTATTACTCAGCAACCATGAAAGAATGTTACGGTGTCGT
TCTAGCAATTCAGCATTGGCGCCCTTATCTGTGGGGCAGACATTTTACGT
GCGTTACTGATCATGCCGCGTTGCGTTATCTCTACACGATGCAATACACG
TCAAACATGCTTACACGCTGGGCGATAGCGCTGCAATCATTCGACTTCAC
GGTAAAACATAAACCAGGAAAGTTGCATGTAGTGCCTGACACGTCATCGC
GTCTTTTTGTGTTTGTGTTTGAATAA