EsuBft3414_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3414_2a-0001
Unique NameEsuBft3414_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:370555..371028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog281687.CJA07136
ProteomeIdEsuBft3414_2
Protein domainsSignalP-TM
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33154|Opisthokonta
Length474
Hectar predicted targeting categorymitochondrion
Evalue3.37e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3414_2aEsuBft3414_2aEctocarpus subulatus male Bft15bgeneScaffold_630 370555..371028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3414_2a-0001-exonEsuBft3414_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 370555..371028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3414_2a-0001-cdsEsuBft3414_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 370555..371028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3414_2a-0001EsuBft3414_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 370555..371028 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3414_2a-0001 ID=EsuBft3414_2a-0001|Name=EsuBft3414_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=474bp|location=Sequence derived from alignment at Scaffold_630:370555..371028- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCTTCCTACAACGGCTGCGCAAGCACAAGCTCAAGCTTTCACA
GCCTAAGGCCACCATTGGCACGACACACTCTGCATTATTGGGACACACCA
TTACTCCCGACGGTATCAGGCCCAACGCCAACAAAGTAGCCGCGCTGGCG
GCTATGCCAATGCCAACCGCCCTCAAGAGACTTCGCTCTCTTCTCGGTGG
TCTGAGCTACTACCGCAGCTTCGTCAAAAACTTGTCTAGACGAGTACGCC
CCGTCACGACAATTCTCAAGAAAAAATCGTCCTTCACCTTCACCTCCGAC
ATGGAAGCCATCGTCCGAGAGATCCTCAAAGAACTCTCCGAGCCGCCAAT
TCTCGTCTTCCCCGACTGGAAAGCCATCGAAGACGGCACCAGACCTCTCC
GCCTCCACTGCGACGCCAGCCTCGATGGTCTGGGCGCGACACTAGAACAA
GAACAGGCGGATGGCTCTGTTTGA
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protein sequence of EsuBft3414_2a-0001

>EsuBft3414_2 ID=EsuBft3414_2|Name=EsuBft3414_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MRAFLQRLRKHKLKLSQPKATIGTTHSALLGHTITPDGIRPNANKVAALA
AMPMPTALKRLRSLLGGLSYYRSFVKNLSRRVRPVTTILKKKSSFTFTSD
MEAIVREILKELSEPPILVFPDWKAIEDGTRPLRLHCDASLDGLGATLEQ
EQADGSV
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mRNA from alignment at Scaffold_630:370555..371028-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3414_2a-0001 ID=EsuBft3414_2a-0001|Name=EsuBft3414_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=474bp|location=Sequence derived from alignment at Scaffold_630:370555..371028- (Ectocarpus subulatus male Bft15b)
ATGCGCGCCTTCCTACAACGGCTGCGCAAGCACAAGCTCAAGCTTTCACA
GCCTAAGGCCACCATTGGCACGACACACTCTGCATTATTGGGACACACCA
TTACTCCCGACGGTATCAGGCCCAACGCCAACAAAGTAGCCGCGCTGGCG
GCTATGCCAATGCCAACCGCCCTCAAGAGACTTCGCTCTCTTCTCGGTGG
TCTGAGCTACTACCGCAGCTTCGTCAAAAACTTGTCTAGACGAGTACGCC
CCGTCACGACAATTCTCAAGAAAAAATCGTCCTTCACCTTCACCTCCGAC
ATGGAAGCCATCGTCCGAGAGATCCTCAAAGAACTCTCCGAGCCGCCAAT
TCTCGTCTTCCCCGACTGGAAAGCCATCGAAGACGGCACCAGACCTCTCC
GCCTCCACTGCGACGCCAGCCTCGATGGTCTGGGCGCGACACTAGAACAA
GAACAGGCGGATGGCTCTGTTTGA
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Coding sequence (CDS) from alignment at Scaffold_630:370555..371028-

>EsuBft3414_2a-0001 ID=EsuBft3414_2a-0001|Name=EsuBft3414_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_630:370555..371028- (Ectocarpus subulatus male Bft15b)
ATGCGCGCCTTCCTACAACGGCTGCGCAAGCACAAGCTCAAGCTTTCACA
GCCTAAGGCCACCATTGGCACGACACACTCTGCATTATTGGGACACACCA
TTACTCCCGACGGTATCAGGCCCAACGCCAACAAAGTAGCCGCGCTGGCG
GCTATGCCAATGCCAACCGCCCTCAAGAGACTTCGCTCTCTTCTCGGTGG
TCTGAGCTACTACCGCAGCTTCGTCAAAAACTTGTCTAGACGAGTACGCC
CCGTCACGACAATTCTCAAGAAAAAATCGTCCTTCACCTTCACCTCCGAC
ATGGAAGCCATCGTCCGAGAGATCCTCAAAGAACTCTCCGAGCCGCCAAT
TCTCGTCTTCCCCGACTGGAAAGCCATCGAAGACGGCACCAGACCTCTCC
GCCTCCACTGCGACGCCAGCCTCGATGGTCTGGGCGCGACACTAGAACAA
GAACAGGCGGATGGCTCTGTTTGA
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