EsuBft3409_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3409_2a-0001
Unique NameEsuBft3409_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:191962..192369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3409_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3409_2aEsuBft3409_2aEctocarpus subulatus male Bft15bgeneScaffold_548 191962..192369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3409_2a-0001-exonEsuBft3409_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 191962..192369 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3409_2a-0001-exonagat-five_prime_utr-8430Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 191962..192081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3409_2a-0001-cdsEsuBft3409_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 192082..192369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3409_2a-0001EsuBft3409_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 192082..192369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3409_2a-0001 ID=EsuBft3409_2a-0001|Name=EsuBft3409_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=408bp|location=Sequence derived from alignment at Scaffold_548:191962..192369+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAGATATTCAACTTTTTGTTGTGCCGTCCCCATTGGAGATTTTTTTCGT
TGGGCAAGACGAACACACAACAACACGCACACGTGGCGGCCCGAAAACAC
GAAAGACGCACGCAAGCACCATGGGGAAGCCTCAGGGACAATCCAAGAAG
AAGACGTTCGGCCCGCGCGGAGCCGATGGCCGAGCGGTTTCGAAGAAACC
GAAGCCGACGCAGCAACATGATCTTCCATCTCCAGGCGCTGGCGGTGCGC
TCTCGGGTGGCCATGACGGCACGATTTTGATGGACGTGGACGAGAGCGAA
AAGGACATTCAAGAAGTGGAAGCAGGAAAAGGAGAAGAAGCGGGCCATGG
AGCAGGAGGGAGAGGAAAAAGAGGCCGAGAACGATGCGTAGTGATGTGTG
TCTTTTAG
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protein sequence of EsuBft3409_2a-0001

>EsuBft3409_2 ID=EsuBft3409_2|Name=EsuBft3409_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MGKPQGQSKKKTFGPRGADGRAVSKKPKPTQQHDLPSPGAGGALSGGHDG
TILMDVDESEKDIQEVEAGKGEEAGHGAGGRGKRGRERCVVMCVF
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mRNA from alignment at Scaffold_548:191962..192369+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3409_2a-0001 ID=EsuBft3409_2a-0001|Name=EsuBft3409_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=408bp|location=Sequence derived from alignment at Scaffold_548:191962..192369+ (Ectocarpus subulatus male Bft15b)
CGAGATATTCAACTTTTTGTTGTGCCGTCCCCATTGGAGATTTTTTTCGT
TGGGCAAGACGAACACACAACAACACGCACACGTGGCGGCCCGAAAACAC
GAAAGACGCACGCAAGCACCATGGGGAAGCCTCAGGGACAATCCAAGAAG
AAGACGTTCGGCCCGCGCGGAGCCGATGGCCGAGCGGTTTCGAAGAAACC
GAAGCCGACGCAGCAACATGATCTTCCATCTCCAGGCGCTGGCGGTGCGC
TCTCGGGTGGCCATGACGGCACGATTTTGATGGACGTGGACGAGAGCGAA
AAGGACATTCAAGAAGTGGAAGCAGGAAAAGGAGAAGAAGCGGGCCATGG
AGCAGGAGGGAGAGGAAAAAGAGGCCGAGAACGATGCGTAGTGATGTGTG
TCTTTTAG
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Coding sequence (CDS) from alignment at Scaffold_548:191962..192369+

>EsuBft3409_2a-0001 ID=EsuBft3409_2a-0001|Name=EsuBft3409_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_548:191962..192369+ (Ectocarpus subulatus male Bft15b)
ATGGGGAAGCCTCAGGGACAATCCAAGAAGAAGACGTTCGGCCCGCGCGG
AGCCGATGGCCGAGCGGTTTCGAAGAAACCGAAGCCGACGCAGCAACATG
ATCTTCCATCTCCAGGCGCTGGCGGTGCGCTCTCGGGTGGCCATGACGGC
ACGATTTTGATGGACGTGGACGAGAGCGAAAAGGACATTCAAGAAGTGGA
AGCAGGAAAAGGAGAAGAAGCGGGCCATGGAGCAGGAGGGAGAGGAAAAA
GAGGCCGAGAACGATGCGTAGTGATGTGTGTCTTTTAG
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