EsuBft336_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft336_7a-0001
Unique NameEsuBft336_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:134756..135876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FWU7
ProteomeIdEsuBft336_7
Protein domainsIPR002048
Protein domainsIPR011992
Protein domainsPF13833
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length88
Hectar predicted targeting categoryno signal peptide or anchor
Evalue2.07e-19
EggNOG OGs28PG7@1|root,2QW47@2759|Eukaryota
Ec32 ortholog descriptionEF-hand, calcium binding motif
Ec32 orthologEc-13_001110.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEF-hand domain pair
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft336_7aEsuBft336_7aEctocarpus subulatus male Bft15bgeneScaffold_255 134756..135876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_7a-0001-exonEsuBft336_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 134756..134758 +
EsuBft336_7a-0001-exonagat-exon-15416Ectocarpus subulatus male Bft15bexonScaffold_255 134999..135876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_7a-0001-cdsEsuBft336_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 134756..134758 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_7a-0001-exonagat-three_prime_utr-13175Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 135146..135876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_7a-0001EsuBft336_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 134756..135145 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft336_7a-0001 ID=EsuBft336_7a-0001|Name=EsuBft336_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=881bp|location=Sequence derived from alignment at Scaffold_255:134756..135876+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATCGATTTCAAGGGCTTCCGAGAAGGGGTGAAGAAGCTCAACCT
TGGCCTGACGGAGCCCGAGATCCTGGACTTTTTCCGATCCTTCGACGCCG
ATGGCAGCGGGGGCATCGACTTTTCAGAGGTGAGGAAGGCAATTCGCTGA
ACCGAGTGGATACAGTGTGCAGCTAACGACACTTCAACCTGGGTTCGAAT
CCCTGCGTGACCGTTTGTGACGCCTTTTTTTCCCGGAAAATAGAAAATGT
CCGGAATACACGCATCCAAGTCATGGTATGCATTCCAGTCCTCCAAGCGA
GTACACATACATGACCCTAACCTCCTCCTCCTCGGCCTGCTCCCCGGCCG
GGGCCGAAATCGACCTAGTGAGTCCCTCGCGGGCGAACCAGGACACAAGA
GATAGTAGGCGGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTC
AGCGTGGCGGTGAGGATGCACAGACGGTGGTAGTGGCGAGAGGTGTGTAT
GGACACTGTTCCCGCGGCAGTAATGCAAAGCGGCAAACTGCACCTGGCAA
CCACCGTCGCGGAAAGCGTGGCCCACGAAGCTGGAGGAGTAGAGAGATTC
GTAAACACCACGTCAGTAAGCACCGCTCGCGGGAGAAGGGAGACGACCGC
GGGCACCGCGGGGAGGGAGTGCTGCACCCTCCTCGTCAAAACACCACAGG
CAAGAACCGAGCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTC
GGAAAAGACGGAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGA
CACGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAGA
GGGCGACCTATCGTTCGGCACGTTCAACGTA
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protein sequence of EsuBft336_7a-0001

>EsuBft336_7 ID=EsuBft336_7|Name=EsuBft336_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MVIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEVRKAIR
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mRNA from alignment at Scaffold_255:134756..135876+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft336_7a-0001 ID=EsuBft336_7a-0001|Name=EsuBft336_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1121bp|location=Sequence derived from alignment at Scaffold_255:134756..135876+ (Ectocarpus subulatus male Bft15b)
ATGGTCAGATACCGAAAAGCTTCTGGGTTATTGCATAATGCGTGTCGCAC
GTGATCGCGTGGTTTCCCCTCCAACATAAGGAATATCGATAGCGGAAAGC
TCTTGGACTATTTTTATTTCACGATGTGCTTTCGCAGGTCATCGATTTCA
AGGGCTTACAAGCGCTAGTTTCCCCCTTAACAAAGCAGTAGATCGCTAGC
GAAAAGCTCTCGGGCTGTCTTTTTTCACGATGTGTTTGCGCAGGTCATCG
ATTTCAAGGGCTTCCGAGAAGGGGTGAAGAAGCTCAACCTTGGCCTGACG
GAGCCCGAGATCCTGGACTTTTTCCGATCCTTCGACGCCGATGGCAGCGG
GGGCATCGACTTTTCAGAGGTGAGGAAGGCAATTCGCTGAACCGAGTGGA
TACAGTGTGCAGCTAACGACACTTCAACCTGGGTTCGAATCCCTGCGTGA
CCGTTTGTGACGCCTTTTTTTCCCGGAAAATAGAAAATGTCCGGAATACA
CGCATCCAAGTCATGGTATGCATTCCAGTCCTCCAAGCGAGTACACATAC
ATGACCCTAACCTCCTCCTCCTCGGCCTGCTCCCCGGCCGGGGCCGAAAT
CGACCTAGTGAGTCCCTCGCGGGCGAACCAGGACACAAGAGATAGTAGGC
GGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGG
TGAGGATGCACAGACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTT
CCCGCGGCAGTAATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGC
GGAAAGCGTGGCCCACGAAGCTGGAGGAGTAGAGAGATTCGTAAACACCA
CGTCAGTAAGCACCGCTCGCGGGAGAAGGGAGACGACCGCGGGCACCGCG
GGGAGGGAGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGA
GCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTCGGAAAAGACG
GAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCG
CAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTA
TCGTTCGGCACGTTCAACGTA
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Coding sequence (CDS) from alignment at Scaffold_255:134756..135876+

>EsuBft336_7a-0001 ID=EsuBft336_7a-0001|Name=EsuBft336_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_255:134756..135876+ (Ectocarpus subulatus male Bft15b)
ATGGTCATCGATTTCAAGGGCTTCCGAGAAGGGGTGAAGAAGCTCAACCT
TGGCCTGACGGAGCCCGAGATCCTGGACTTTTTCCGATCCTTCGACGCCG
ATGGCAGCGGGGGCATCGACTTTTCAGAGGTGAGGAAGGCAATTCGCTGA
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