EsuBft336_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft336_5a-0001
Unique Name	EsuBft336_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:102580..104717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	160860.XP_007357160.1
ProteomeId	EsuBft336_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	4751\|Fungi
Length	207
Hectar predicted targeting category	other localisation
Evalue	6.34e-27
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi,3V3WY@5204\|Basidiomycota,22F53@155619\|Agaricomycetes,3H41B@355688\|Agaricomycetes incertae sedis
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a	EsuBft336_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 102580..104717 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a-0001-exon	agat-exon-15404	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 102580..103220 +
EsuBft336_5a-0001-exon	EsuBft336_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 103283..104717 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a-0001-exon	agat-five_prime_utr-8352	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 102580..102619 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a-0001-cds	EsuBft336_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 102620..103220 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a-0001-exon	agat-three_prime_utr-13173	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 104689..104717 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_5a-0001	EsuBft336_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 102620..104688 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:102580..104717+
coding sequence from alignment at Scaffold_255:102580..104717+

spliced messenger RNA

>EsuBft336_5a-0001 ID=EsuBft336_5a-0001|Name=EsuBft336_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2076bp|location=Sequence derived from alignment at Scaffold_255:102580..104717+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGACGTGCTGA
AGTACCGGGTCGAGACGTATCTCCCCGCTTACTTCGAGCATCGCGACTAC
ACGGAGATCTGGATCGACGCGAGCATGGAGGAAGTTCGATCCTGGGAGGT
GGAAACGCAGCCGAGGGACATGAAGGAGGACGGGCGTGTTTGGGTTTGCG
TGCATGCCTTCGCAGAAACCCTCTCCGAGTTCCATCCGGATCTACGAGCG
AGGGTCACCAGCAAGAAAAAGTACGCCGATGGCAGAAGAGCGATATTTTG
CTACCAGGACGAGTGCATCTACAGGGCCCACGACGGGGAGAGCAAGGCGT
GGTGGCCGCCGATGATGCACGGGCTGAAAAAGAAGGGAGAAGGACAGGGC
ATCATGATTTCCGGCACCATCGTGGGCGACGTCGGATTCGTCGAGGGCAC
TCAAGACGACATCGACAAGGCCCAAGATCTGCGGCGCGAGCGCTGCCGCA
TTTCGGAGGAAAAGCACGCAGCAGGTGATCACACCAGGCCGGAAAAGTAC
CGCGACATCAACATGCTCTACTTCGAGGGCGAGGGCGACGACCGCAAGTT
CTCGACGTACTACAAGTTCGAGTACGGCAAGAACAAGGAGGGCTACTGGA
CGGGGGAGAAGATGATCGAGCACATGGCGGATGTGTTGGATCTGTTGGCC
GTCAAGTTCCCGAGGCACAGGCCCATCTGTTTTTTCGACTGGTCATCGTG
TCATGATTGCGTTGAGGAGGGGGCACCGAGTGTAACTAGGATGAACGCAG
GGTACGGGGGGGTGAGAAAGGGTCAGGAGATAGCTCCTCAGAATGCAACT
ACCATACTGGAAGACACACCTAAACTGAAGGTAGGGGCGGTGCAGCACCT
CACCTTCCAGCAGGGAGAGTATCCATTCTATGAGCCAGGCGCCACCGATC
ACGTAGGCAAGGTCAAGGGGATGAAGCAAATCCTGTTTGAGAGGGGGCTT
TGGATCCCAGGTATGACCATGTCGGGGGGCAAGACGGGCCAGGAGCCTAA
CAAGAAGATGAGCATGCCGGCGGTGTTGCGCGCGCAAAAGGATTTTGCGA
ACGTCGACTCTAGCCTAGAGGTTCTGCTGAAGCGCCACGGAGGGGTTGCG
CTCATGCTTCCAAAGTTCCATTGCGAGTTGAACCCGATCGAGCTTGTGTG
GGGTAGATCTAAGTGGTGGGTACGTAGGAACTGCAAGTACACTATCGCGT
GCTTGCGAGAGAACGTTTCTAAGAGCTACGGGGTACACAACTTGAGCCTA
GACATTGTTCAAAAGTTCTGCAGGAAGGTGGCCAACTTCCACGCGGTGTA
CGACGCCGGGCTTACGGGCGCCGAGGCGGTAGAGGCGCAAGAGAAATGCA
AGTCGCACCGTAAGCCAGCTCCATCCGAGTACATTAACCCCAAGTAGTGT
ATGCTATGATCGCGGCGGTACGTATG

protein sequence of EsuBft336_5a-0001

>EsuBft336_5 ID=EsuBft336_5|Name=EsuBft336_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=668bp
MTFTLRLEALTAIRDALTRRGGTLTLVTQVKSAKKYRLQLTADLSDGSSS
MWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSN
DTPPPPRGKRPRDCQPAAEILTPPPKRPGYEGAGRPKGTFGRKRLRAMLD
RYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNR
DVLKYRVETYLPAYFEHRDYTEIWIDASMEEVRSWEVETQPRDMKEDGRV
WVCVHAFAETLSEFHPDLRARVTSKKKYADGRRAIFCYQDECIYRAHDGE
SKAWWPPMMHGLKKKGEGQGIMISGTIVGDVGFVEGTQDDIDKAQDLRRE
RCRISEEKHAAGDHTRPEKYRDINMLYFEGEGDDRKFSTYYKFEYGKNKE
GYWTGEKMIEHMADVLDLLAVKFPRHRPICFFDWSSCHDCVEEGAPSVTR
MNAGYGGVRKGQEIAPQNATTILEDTPKLKVGAVQHLTFQQGEYPFYEPG
ATDHVGKVKGMKQILFERGLWIPGMTMSGGKTGQEPNKKMSMPAVLRAQK
DFANVDSSLEVLLKRHGGVALMLPKFHCELNPIELVWGRSKWWVRRNCKY
TIACLRENVSKSYGVHNLSLDIVQKFCRKVANFHAVYDAGLTGAEAVEAQ
EKCKSHRKPAPSEYINPK

mRNA from alignment at Scaffold_255:102580..104717+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft336_5a-0001 ID=EsuBft336_5a-0001|Name=EsuBft336_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2138bp|location=Sequence derived from alignment at Scaffold_255:102580..104717+ (Ectocarpus subulatus male Bft15b)
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGGTGTGTGTA
GGAGAGAGGCTCTGCGCAAGCTCGCAAAGCATACGACGGTCATGACCGTG
AAGACGTGCTGAAGTACCGGGTCGAGACGTATCTCCCCGCTTACTTCGAG
CATCGCGACTACACGGAGATCTGGATCGACGCGAGCATGGAGGAAGTTCG
ATCCTGGGAGGTGGAAACGCAGCCGAGGGACATGAAGGAGGACGGGCGTG
TTTGGGTTTGCGTGCATGCCTTCGCAGAAACCCTCTCCGAGTTCCATCCG
GATCTACGAGCGAGGGTCACCAGCAAGAAAAAGTACGCCGATGGCAGAAG
AGCGATATTTTGCTACCAGGACGAGTGCATCTACAGGGCCCACGACGGGG
AGAGCAAGGCGTGGTGGCCGCCGATGATGCACGGGCTGAAAAAGAAGGGA
GAAGGACAGGGCATCATGATTTCCGGCACCATCGTGGGCGACGTCGGATT
CGTCGAGGGCACTCAAGACGACATCGACAAGGCCCAAGATCTGCGGCGCG
AGCGCTGCCGCATTTCGGAGGAAAAGCACGCAGCAGGTGATCACACCAGG
CCGGAAAAGTACCGCGACATCAACATGCTCTACTTCGAGGGCGAGGGCGA
CGACCGCAAGTTCTCGACGTACTACAAGTTCGAGTACGGCAAGAACAAGG
AGGGCTACTGGACGGGGGAGAAGATGATCGAGCACATGGCGGATGTGTTG
GATCTGTTGGCCGTCAAGTTCCCGAGGCACAGGCCCATCTGTTTTTTCGA
CTGGTCATCGTGTCATGATTGCGTTGAGGAGGGGGCACCGAGTGTAACTA
GGATGAACGCAGGGTACGGGGGGGTGAGAAAGGGTCAGGAGATAGCTCCT
CAGAATGCAACTACCATACTGGAAGACACACCTAAACTGAAGGTAGGGGC
GGTGCAGCACCTCACCTTCCAGCAGGGAGAGTATCCATTCTATGAGCCAG
GCGCCACCGATCACGTAGGCAAGGTCAAGGGGATGAAGCAAATCCTGTTT
GAGAGGGGGCTTTGGATCCCAGGTATGACCATGTCGGGGGGCAAGACGGG
CCAGGAGCCTAACAAGAAGATGAGCATGCCGGCGGTGTTGCGCGCGCAAA
AGGATTTTGCGAACGTCGACTCTAGCCTAGAGGTTCTGCTGAAGCGCCAC
GGAGGGGTTGCGCTCATGCTTCCAAAGTTCCATTGCGAGTTGAACCCGAT
CGAGCTTGTGTGGGGTAGATCTAAGTGGTGGGTACGTAGGAACTGCAAGT
ACACTATCGCGTGCTTGCGAGAGAACGTTTCTAAGAGCTACGGGGTACAC
AACTTGAGCCTAGACATTGTTCAAAAGTTCTGCAGGAAGGTGGCCAACTT
CCACGCGGTGTACGACGCCGGGCTTACGGGCGCCGAGGCGGTAGAGGCGC
AAGAGAAATGCAAGTCGCACCGTAAGCCAGCTCCATCCGAGTACATTAAC
CCCAAGTAGTGTATGCTATGATCGCGGCGGTACGTATG

Coding sequence (CDS) from alignment at Scaffold_255:102580..104717+

>EsuBft336_5a-0001 ID=EsuBft336_5a-0001|Name=EsuBft336_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2007bp|location=Sequence derived from alignment at Scaffold_255:102580..104717+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCACGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCT
GACTAGGCGTGGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGA
AAAAGTATCGTCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGC
ATGTGGCGCAGCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACG
TGACTGGTCGGCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTT
CTAGCGGCAGCGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAAC
GACACACCCCCGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGC
GGCTGAGATCCTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTG
GCCGACCGAAGGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGAT
AGATACAGAGAGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGA
AGTGCGGGACCTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGA
AACATGAGCAGGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGG
GACGTGCTGAAGTACCGGGTCGAGACGTATCTCCCCGCTTACTTCGAGCA
TCGCGACTACACGGAGATCTGGATCGACGCGAGCATGGAGGAAGTTCGAT
CCTGGGAGGTGGAAACGCAGCCGAGGGACATGAAGGAGGACGGGCGTGTT
TGGGTTTGCGTGCATGCCTTCGCAGAAACCCTCTCCGAGTTCCATCCGGA
TCTACGAGCGAGGGTCACCAGCAAGAAAAAGTACGCCGATGGCAGAAGAG
CGATATTTTGCTACCAGGACGAGTGCATCTACAGGGCCCACGACGGGGAG
AGCAAGGCGTGGTGGCCGCCGATGATGCACGGGCTGAAAAAGAAGGGAGA
AGGACAGGGCATCATGATTTCCGGCACCATCGTGGGCGACGTCGGATTCG
TCGAGGGCACTCAAGACGACATCGACAAGGCCCAAGATCTGCGGCGCGAG
CGCTGCCGCATTTCGGAGGAAAAGCACGCAGCAGGTGATCACACCAGGCC
GGAAAAGTACCGCGACATCAACATGCTCTACTTCGAGGGCGAGGGCGACG
ACCGCAAGTTCTCGACGTACTACAAGTTCGAGTACGGCAAGAACAAGGAG
GGCTACTGGACGGGGGAGAAGATGATCGAGCACATGGCGGATGTGTTGGA
TCTGTTGGCCGTCAAGTTCCCGAGGCACAGGCCCATCTGTTTTTTCGACT
GGTCATCGTGTCATGATTGCGTTGAGGAGGGGGCACCGAGTGTAACTAGG
ATGAACGCAGGGTACGGGGGGGTGAGAAAGGGTCAGGAGATAGCTCCTCA
GAATGCAACTACCATACTGGAAGACACACCTAAACTGAAGGTAGGGGCGG
TGCAGCACCTCACCTTCCAGCAGGGAGAGTATCCATTCTATGAGCCAGGC
GCCACCGATCACGTAGGCAAGGTCAAGGGGATGAAGCAAATCCTGTTTGA
GAGGGGGCTTTGGATCCCAGGTATGACCATGTCGGGGGGCAAGACGGGCC
AGGAGCCTAACAAGAAGATGAGCATGCCGGCGGTGTTGCGCGCGCAAAAG
GATTTTGCGAACGTCGACTCTAGCCTAGAGGTTCTGCTGAAGCGCCACGG
AGGGGTTGCGCTCATGCTTCCAAAGTTCCATTGCGAGTTGAACCCGATCG
AGCTTGTGTGGGGTAGATCTAAGTGGTGGGTACGTAGGAACTGCAAGTAC
ACTATCGCGTGCTTGCGAGAGAACGTTTCTAAGAGCTACGGGGTACACAA
CTTGAGCCTAGACATTGTTCAAAAGTTCTGCAGGAAGGTGGCCAACTTCC
ACGCGGTGTACGACGCCGGGCTTACGGGCGCCGAGGCGGTAGAGGCGCAA
GAGAAATGCAAGTCGCACCGTAAGCCAGCTCCATCCGAGTACATTAACCC
CAAGTAG