EsuBft336_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft336_4a-0001
Unique NameEsuBft336_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:86902..87598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft336_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length50
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4aEsuBft336_4aEctocarpus subulatus male Bft15bgeneScaffold_255 86902..87598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4a-0001EsuBft336_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 86921..87073 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4a-0001-exonagat-exon-15403Ectocarpus subulatus male Bft15bexonScaffold_255 86902..87343 +
EsuBft336_4a-0001-exonEsuBft336_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 87534..87598 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4a-0001-exonagat-five_prime_utr-8351Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 86902..86920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4a-0001-cdsEsuBft336_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 86921..87073 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_4a-0001-exonagat-three_prime_utr-13171Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 87074..87343 +
EsuBft336_4a-0001-exonagat-three_prime_utr-13172Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 87534..87598 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft336_4a-0001 ID=EsuBft336_4a-0001|Name=EsuBft336_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=507bp|location=Sequence derived from alignment at Scaffold_255:86902..87598+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGTCGGTGTAGGCAGCAATGCCCATCTCATCATTGTGCGCGGAGGCAG
ACGTCATCAGAAAGGTGGACGGGCACTATGTACACGGCCCTAGGTTTGCT
GGCGGGAGCTGTACTGTCTCAGTAACCTGGTTCTGCCATCAAATGAGGAG
GGGACAGATGGCGACGAGCTGATTGGGCTGGTTGACCCTTCGGCGTGAGA
ATTTTCAGACCAAGAACCCTAAGTGCAACGCGGGAGAAAGCGAGGAACCG
ACTGGGAAGGACAGCAACGAGAGGGTGTACGAAGCGGAGCGGGTCGAGTT
TGGTCGTGCTAGGAGTGGCCACAGAGGCACCAGAGCAGCGGCACCGGAGC
AGCGGAACCGGAGCAGGCGGACGGCATCGAACCGTGGCGCACAGAAAAAC
ATCTCCTGTGTTGTCAACTATTTCCCTTTTTTTTCCTGAATAGTGTCGGG
TGTGTGTGATGACGTCACTGGCTTTGTAGAGAGACGCGGCAGAGATGGCG
CGGATAA
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protein sequence of EsuBft336_4a-0001

>EsuBft336_4 ID=EsuBft336_4|Name=EsuBft336_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MPISSLCAEADVIRKVDGHYVHGPRFAGGSCTVSVTWFCHQMRRGQMATS
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mRNA from alignment at Scaffold_255:86902..87598+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft336_4a-0001 ID=EsuBft336_4a-0001|Name=EsuBft336_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=697bp|location=Sequence derived from alignment at Scaffold_255:86902..87598+ (Ectocarpus subulatus male Bft15b)
GCCGTCGGTGTAGGCAGCAATGCCCATCTCATCATTGTGCGCGGAGGCAG
ACGTCATCAGAAAGGTGGACGGGCACTATGTACACGGCCCTAGGTTTGCT
GGCGGGAGCTGTACTGTCTCAGTAACCTGGTTCTGCCATCAAATGAGGAG
GGGACAGATGGCGACGAGCTGATTGGGCTGGTTGACCCTTCGGCGTGAGA
ATTTTCAGACCAAGAACCCTAAGTGCAACGCGGGAGAAAGCGAGGAACCG
ACTGGGAAGGACAGCAACGAGAGGGTGTACGAAGCGGAGCGGGTCGAGTT
TGGTCGTGCTAGGAGTGGCCACAGAGGCACCAGAGCAGCGGCACCGGAGC
AGCGGAACCGGAGCAGGCGGACGGCATCGAACCGTGGCGCACAGAAAAAC
ATCTCCTGTGTTGTCAACTATTTCCCTTTTTTTTCCTGAATAGTCTTCAG
GTGTCGGGTGTGTGTGATGACGTCACTGGCTTTGTAGAGAGACGCGGCAG
AGATGNAGGCACCAGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCAGGC
GGACGGCATCGAACCGTGGCGCACAGAAAAACATCTCCTGTGTTGTCAAC
TATTTCCCTTTTTTTTCCTGAATAGTCTTCAGGTGTCGGGTGTGTGTGAT
GACGTCACTGGCTTTGTAGAGAGACGCGGCAGAGATGGCGCGGATAA
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Coding sequence (CDS) from alignment at Scaffold_255:86902..87598+

>EsuBft336_4a-0001 ID=EsuBft336_4a-0001|Name=EsuBft336_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_255:86902..87598+ (Ectocarpus subulatus male Bft15b)
ATGCCCATCTCATCATTGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGA
CGGGCACTATGTACACGGCCCTAGGTTTGCTGGCGGGAGCTGTACTGTCT
CAGTAACCTGGTTCTGCCATCAAATGAGGAGGGGACAGATGGCGACGAGC
TGA
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