EsuBft336_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft336_14a-0001
Unique Name	EsuBft336_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:205340..206614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft336_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	81
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft336_14a	EsuBft336_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 205340..206614 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_14a-0001-exon	EsuBft336_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 205340..205390 -
EsuBft336_14a-0001-exon	agat-exon-15425	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 205618..206299 -
EsuBft336_14a-0001-exon	agat-exon-15424	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 206538..206614 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_14a-0001-cds	EsuBft336_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 205340..205390 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_14a-0001	EsuBft336_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 205340..206614 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:205340..206614-
coding sequence from alignment at Scaffold_255:205340..206614-

spliced messenger RNA

>EsuBft336_14a-0001 ID=EsuBft336_14a-0001|Name=EsuBft336_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=810bp|location=Sequence derived from alignment at Scaffold_255:205340..206614- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTTTAGAAAAGCATCTTCCGGAGCTGTCCGAAAACGCGCCAGT
TGGTTTTGGCATCCTCTTGGTCGTGAAGTGCTCGCGCGAAGGCTGCAACT
CGCGAGCTACCTTCAGCTTCCCCGAGACCACCACCCCTACCCCTACGCGT
CTCTCCGCCGCTGCTTCGTCAGCGTCATCATTACCTCGACCGGGGACCAC
CAACACTACCGTCACCACCACCCTGAAGCGGACCTGGAAGGGCCGGCACA
AGAAAGAGGAGTTCTGCGTAGCGCACGCGCTGCACGGGATGGTGCTGTCC
AGGGGCAGGGGTTGCTCCCACCCCGGTTGCTCCAAGCGCGCAAGCTACGG
GAACGCCGAGACGCGGCGGAGGGAGTTCTGCGCCGCCCACGCGGAGACCG
GAATGGTGAACATTAACAGCATCAAGGTCCCGGAGACGCTAAAACGCGGC
GGGCAGTCGACGGCGACAAGCAACGCGAGGGCTGTGGCTGCTGCTGGTGC
CAACAAGCGAAAGGCCGCCGCCGTCACCAGTGCAGCGAATGACGTTATCG
CCGGGAATGGCTACGGTGGTGGAGGTGGTGATGGCGGTGTGGGGGCTCCG
TTCGCCTCTGTGCGACAAACGTACCGGTCGGACGGTTCCCCCCCCGGCGG
AAGGACGTTAGTTCGGGAGCACCAACAACGCGTCGGAATAGGAGGAGGAG
GAGGAGGAGGAGAAGGGTCGGAGAGGCGACCGGCAGCCAGCTGGAGCTCG
TCTGACGAGGGACGGAAGGACCAGCGGAGAGAGCAGCCCTCCGACCAGCA
GCAGCAGTGA

protein sequence of EsuBft336_14a-0001

>EsuBft336_14 ID=EsuBft336_14|Name=EsuBft336_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MAALEKHLPELSENAPVGFGILLVVKCSREGCNSRATFSFPETTTPTPTR
LSAAASSASSLPRPGTTNTTVTTTLKRTWKGRHKKEEFCVAHALHGMVLS
RGRGCSHPGCSKRASYGNAETRRREFCAAHAETGMVNINSIKVPETLKRG
GQSTATSNARAVAAAGANKRKAAAVTSAANDVIAGNGYGGGGGDGGVGAP
FASVRQTYRSDGSPPGGRTLVREHQQRVGIGGGGGGGEGSERRPAASWSS
SDEGRKDQRREQPSDQQQQ

mRNA from alignment at Scaffold_255:205340..206614-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft336_14a-0001 ID=EsuBft336_14a-0001|Name=EsuBft336_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1275bp|location=Sequence derived from alignment at Scaffold_255:205340..206614- (Ectocarpus subulatus male Bft15b)
ATGGCGGCTTTAGAAAAGCATCTTCCGGAGCTGTCCGAAAACGCGCCAGT
TGGTTTTGGCATCCTCTTGGTCGTGAAGTAATCGAGCTTTGAAATCGATC
CAGGGAGTGTGGAATCTTACGTCATACAACCTATGGTGGTCTAACTTCAT
TCACACGTTCTTGTTTGTGGTGGGTTATTTACTCGTTTTTCGCGATCACT
ACGTCGCCTCGCTGACGCTCTATCAGCTCAAATCCATTCATTTATTTTTT
CCCGTGCCTGATGTACATACGACATGGTTCCACCTCTGCCTCTGCTTGAC
GGCCCGCCGACGCAGGTGCTCGCGCGAAGGCTGCAACTCGCGAGCTACCT
TCAGCTTCCCCGAGACCACCACCCCTACCCCTACGCGTCTCTCCGCCGCT
GCTTCGTCAGCGTCATCATTACCTCGACCGGGGACCACCAACACTACCGT
CACCACCACCCTGAAGCGGACCTGGAAGGGCCGGCACAAGAAAGAGGAGT
TCTGCGTAGCGCACGCGCTGCACGGGATGGTGCTGTCCAGGGGCAGGGGT
TGCTCCCACCCCGGTTGCTCCAAGCGCGCAAGCTACGGGAACGCCGAGAC
GCGGCGGAGGGAGTTCTGCGCCGCCCACGCGGAGACCGGAATGGTGAACA
TTAACAGCATCAAGGTCCCGGAGACGCTAAAACGCGGCGGGCAGTCGACG
GCGACAAGCAACGCGAGGGCTGTGGCTGCTGCTGGTGCCAACAAGCGAAA
GGCCGCCGCCGTCACCAGTGCAGCGAATGACGTTATCGCCGGGAATGGCT
ACGGTGGTGGAGGTGGTGATGGCGGTGTGGGGGCTCCGTTCGCCTCTGTG
CGACAAACGTACCGGTCGGACGGTTCCCCCCCCGGCGGAAGGACGTTAGT
TCGGGAGCACCAACAACGCGTCGGAATAGGAGGAGGAGGAGGAGGAGGAG
AAGGGTCGGAGAGGCGACCGGCAGCCAGCTGGAGCTCGTCTGACGAGGTG
TGTAGTAGACCTTGGGTTGCGTCCGGCGGGGAAGGGGGCGGGGTCGGCGG
TGGCGGTGGTGTTGGTGGCTCTGTCGACCAGTCCGCATCTTTAAGCGCCG
CTGGTGCTGGCTCTCTCGACCGTTTCGCTAATTCAAGCGGTGACGTCCCT
ACGAGTTCCGCAGCGGCGTCTCACGATAGTCCTTGTTGTTCGGGCTCCGG
CGGCGGTGTGGAGGAGGTCAGCAGGGACGGAAGGACCAGCGGAGAGAGCA
GCCCTCCGACCAGCAGCAGCAGTGA

Coding sequence (CDS) from alignment at Scaffold_255:205340..206614-

>EsuBft336_14a-0001 ID=EsuBft336_14a-0001|Name=EsuBft336_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=810bp|location=Sequence derived from alignment at Scaffold_255:205340..206614- (Ectocarpus subulatus male Bft15b)
ATGGCGGCTTTAGAAAAGCATCTTCCGGAGCTGTCCGAAAACGCGCCAGT
TGGTTTTGGCATCCTCTTGGTCGTGAAGTGCTCGCGCGAAGGCTGCAACT
CGCGAGCTACCTTCAGCTTCCCCGAGACCACCACCCCTACCCCTACGCGT
CTCTCCGCCGCTGCTTCGTCAGCGTCATCATTACCTCGACCGGGGACCAC
CAACACTACCGTCACCACCACCCTGAAGCGGACCTGGAAGGGCCGGCACA
AGAAAGAGGAGTTCTGCGTAGCGCACGCGCTGCACGGGATGGTGCTGTCC
AGGGGCAGGGGTTGCTCCCACCCCGGTTGCTCCAAGCGCGCAAGCTACGG
GAACGCCGAGACGCGGCGGAGGGAGTTCTGCGCCGCCCACGCGGAGACCG
GAATGGTGAACATTAACAGCATCAAGGTCCCGGAGACGCTAAAACGCGGC
GGGCAGTCGACGGCGACAAGCAACGCGAGGGCTGTGGCTGCTGCTGGTGC
CAACAAGCGAAAGGCCGCCGCCGTCACCAGTGCAGCGAATGACGTTATCG
CCGGGAATGGCTACGGTGGTGGAGGTGGTGATGGCGGTGTGGGGGCTCCG
TTCGCCTCTGTGCGACAAACGTACCGGTCGGACGGTTCCCCCCCCGGCGG
AAGGACGTTAGTTCGGGAGCACCAACAACGCGTCGGAATAGGAGGAGGAG
GAGGAGGAGGAGAAGGGTCGGAGAGGCGACCGGCAGCCAGCTGGAGCTCG
TCTGACGAGGGACGGAAGGACCAGCGGAGAGAGCAGCCCTCCGACCAGCA
GCAGCAGTGA