EsuBft336_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft336_12a-0001
Unique Name	EsuBft336_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:193463..194501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FT26
ProteomeId	EsuBft336_12
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2880.D7FT26\|-
Length	103
Hectar predicted targeting category	other localisation
Evalue	9.58e-06
EggNOG OGs	29ZCP@1\|root,2RXW0@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft336_12a	EsuBft336_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 193463..194501 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_12a-0001-exon	EsuBft336_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 193463..194501 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_12a-0001-cds	EsuBft336_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 193463..193672 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_12a-0001-exon	agat-three_prime_utr-13168	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 193673..194501 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft336_12a-0001	EsuBft336_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 193463..193672 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:193463..194501+
coding sequence from alignment at Scaffold_255:193463..194501+

spliced messenger RNA

>EsuBft336_12a-0001 ID=EsuBft336_12a-0001|Name=EsuBft336_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1039bp|location=Sequence derived from alignment at Scaffold_255:193463..194501+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGCTTC
GGGCGGAGCTGCTGGTGCTGGTGCTGGCACTGCCACAACCTCTTGCCGCT
ACCCGGGGTGTCCCAAGAGGCCGACCTACGGCATTGAGGCGAGCCGGAGA
AGGGAGTGCTGCGCGGTGCACGCGCTCCCGGGAATGGTCAACATCGACCT
CACGAGGTGAGTTGTGTAATGTAATTCAGTCCCATCCCGTCCTCGTGGTG
AATGAATGCCGTACAGTGGCGGCTACGGTTGAAGAGACTATTTAAGAGAA
AGTACCGATTTAAGAGAGTCGAACTGGCTTGTCACGACCATGAGAAACAC
ATACATTTCACAGACAGCAGTACGGTTTAAGAGCAAACTGGTTTCAAGAG
AGAAATGCTGGCTTGTCACGACCTTCTCGTAAACCGTAGCTACCACTGTA
GTTAGTTCAGTCCCATCCCATCCTCGTGCTGAATGAATGCCGTACTGTAC
CGTATTGTGGGGGTGTTGACGCCCCTCCTTGACCGATTTGCGGAGCTCGA
TTGCTGTTCGATGAAGTTACGCATTAGCTCTAATGATATAATTTCATCGA
ATACGTTCCTCTTTACAGCAGAAAAAGCCAGTCTCGTCCCATCCTTACTT
ACCGCAGGCGACGACGTGTAGAGAGATCTCGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCC

protein sequence of EsuBft336_12a-0001

>EsuBft336_12 ID=EsuBft336_12|Name=EsuBft336_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MQPAAAAAAAAAAGGASGGAAGAGAGTATTSCRYPGCPKRPTYGIEASRR
RECCAVHALPGMVNIDLTR

mRNA from alignment at Scaffold_255:193463..194501+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft336_12a-0001 ID=EsuBft336_12a-0001|Name=EsuBft336_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1039bp|location=Sequence derived from alignment at Scaffold_255:193463..194501+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGCTTC
GGGCGGAGCTGCTGGTGCTGGTGCTGGCACTGCCACAACCTCTTGCCGCT
ACCCGGGGTGTCCCAAGAGGCCGACCTACGGCATTGAGGCGAGCCGGAGA
AGGGAGTGCTGCGCGGTGCACGCGCTCCCGGGAATGGTCAACATCGACCT
CACGAGGTGAGTTGTGTAATGTAATTCAGTCCCATCCCGTCCTCGTGGTG
AATGAATGCCGTACAGTGGCGGCTACGGTTGAAGAGACTATTTAAGAGAA
AGTACCGATTTAAGAGAGTCGAACTGGCTTGTCACGACCATGAGAAACAC
ATACATTTCACAGACAGCAGTACGGTTTAAGAGCAAACTGGTTTCAAGAG
AGAAATGCTGGCTTGTCACGACCTTCTCGTAAACCGTAGCTACCACTGTA
GTTAGTTCAGTCCCATCCCATCCTCGTGCTGAATGAATGCCGTACTGTAC
CGTATTGTGGGGGTGTTGACGCCCCTCCTTGACCGATTTGCGGAGCTCGA
TTGCTGTTCGATGAAGTTACGCATTAGCTCTAATGATATAATTTCATCGA
ATACGTTCCTCTTTACAGCAGAAAAAGCCAGTCTCGTCCCATCCTTACTT
ACCGCAGGCGACGACGTGTAGAGAGATCTCGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_255:193463..194501+

>EsuBft336_12a-0001 ID=EsuBft336_12a-0001|Name=EsuBft336_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_255:193463..194501+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGCTTC
GGGCGGAGCTGCTGGTGCTGGTGCTGGCACTGCCACAACCTCTTGCCGCT
ACCCGGGGTGTCCCAAGAGGCCGACCTACGGCATTGAGGCGAGCCGGAGA
AGGGAGTGCTGCGCGGTGCACGCGCTCCCGGGAATGGTCAACATCGACCT
CACGAGGTGA