EsuBft336_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft336_10a-0001
Unique NameEsuBft336_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:179324..180501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVB3
ProteomeIdEsuBft336_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length84
Hectar predicted targeting categoryother localisation
Evalue2.06e-41
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft336_10aEsuBft336_10aEctocarpus subulatus male Bft15bgeneScaffold_255 179324..180501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_10a-0001EsuBft336_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 179534..180501 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_10a-0001-exonEsuBft336_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 179324..179886 -
EsuBft336_10a-0001-exonagat-exon-15420Ectocarpus subulatus male Bft15bexonScaffold_255 179943..180054 -
EsuBft336_10a-0001-exonagat-exon-15421Ectocarpus subulatus male Bft15bexonScaffold_255 180199..180301 -
EsuBft336_10a-0001-exonagat-exon-15419Ectocarpus subulatus male Bft15bexonScaffold_255 180437..180501 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_10a-0001-exonagat-three_prime_utr-13166Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 179324..179533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft336_10a-0001-cdsEsuBft336_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 179534..179886 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft336_10a-0001 ID=EsuBft336_10a-0001|Name=EsuBft336_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=843bp|location=Sequence derived from alignment at Scaffold_255:179324..180501- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGACTATGGCGTGAAAATGGCGAGCACGGTGGACCTGCGTGT
CCTCGCCGTTTCCAAGGACGCCGTTGCCTCGGCACTCTTGTACGAGGCCA
TCCACAAGAACAAGGACCCGACCACGTCCGTGCCTTCTTCACCGTTCGAC
CCGGCTATCGGCTTGAAGGTGCGCCTCTACAACGCCAGCCATTCCGCCTG
CGTGGCGGTAGGTCACGTGGTGTCCGACGCCACCGCGGAGGCCGCCCTTC
GTCACTGGCAAAGTTCTGCCAAGCTACAAGGGGGTGACCCGGTAGAGGGG
TCGCCGATCTTGGCTGCGCCTGGGGCGGGGGCGGCGGGGGCGGCGCGGGC
GGCGCGGGCGGCGTTGCCGCAGTTCAGGGCCTGCACCGAATGCGGACACC
ACAAGGGTGCATACCCTGCTAAACACCCTGGGAATCGCCGTGGACATAAG
GCGAAAGGTTCAGCGCCCCAGCCCGACGTTGAACCGGCGAAAAAATGTTT
AGTGGACCAGAGCTTGCGGCGTCCAGAGTCGGACAAAGTCTGGAACCCTA
AGCAAAGGAAGAGAACGTTTCTGCCCTGCCCGTGCGATGTATGCAAGGGC
TCATACGCACACGTGGAGGATGGTGATAGTTAGCCTGTACTGCCGGGTCG
AAAAGAGCTGGACACACGTAAAAAAAAGTAAATATTTGCCTACCGGTTCG
AAAGGCCGTTCGGTCAGTTAAGAGTGCACTAATTGTACGGCAGTCGCCCA
GAATTTCGGATGGTAAAGGAAACTAACAAACCGCCCACGATTGAGACATC
AGATACACCACGGCTGCCCAGGCGATGTGTGTGTGTGTGTGTG
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protein sequence of EsuBft336_10a-0001

>EsuBft336_10 ID=EsuBft336_10|Name=EsuBft336_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MLNDYGVKMASTVDLRVLAVSKDAVASALLYEAIHKNKDPTTSVPSSPFD
PAIGLKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSAKLQGGDPVEG
SPILAAPGAGAAGAARAARAALPQFRACTECGHHKGAYPAKHPGNRRGHK
AKGSAPQPDVEPAKKCLVDQSLRRPESDKVWNPKQRKRTFLPCPCDVCKG
SYAHVEDGDS
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mRNA from alignment at Scaffold_255:179324..180501-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft336_10a-0001 ID=EsuBft336_10a-0001|Name=EsuBft336_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_255:179324..180501- (Ectocarpus subulatus male Bft15b)
ATGCTCAACGACTATGGCGTGAAAATGGCGAGCACGGTGGACCTGCGTGT
CCTCGCCGTTTCCAAGTTGGTGACATCGTCTCGAACACTCGCCGGCTTGA
CGGCGTGCCTCCTGGGGGGGCAGCTGCCGAAGGATACCGTCCGATGCTCC
CGTTGGGGGAGCGCTCAACTCTCCGTTGAACAGCTCGACTAGGCCATCAG
GGACGCCGTTGCCTCGGCACTCTTGTACGAGGCCATCCACAAGAACAAGG
ACCCGACCACGTCCGTGCCTTCTTCACCGTTCGACCCGGCTATCGGCTTG
AAGGTGAGCGCCTACGCATTGTGGTACCGGCCGCACTTTCACTTTGATGT
GGACCGACAACAACAGATCATGGCAGGTTCCAAATTTGTGCTGAAACCCA
AGCAACAACGCTTTCCCTCGTTCTTTTGCCCTCTGCGCGTACTACAGGTG
CGCCTCTACAACGCCAGCCATTCCGCCTGCGTGGCGGTAGGTCACGTGGT
GTCCGACGCCACCGCGGAGGCCGCCCTTCGTCACTGGCAAAGTTCTGCCA
AGCTACAAGGTCTTTCCGGGAGCAGGCAGTGGGCATGGCGTGGTTGTAGG
GGGGCTCCGAGGCAGGGGGTGACCCGGTAGAGGGGTCGCCGATCTTGGCT
GCGCCTGGGGCGGGGGCGGCGGGGGCGGCGCGGGCGGCGCGGGCGGCGTT
GCCGCAGTTCAGGGCCTGCACCGAATGCGGACACCACAAGGGTGCATACC
CTGCTAAACACCCTGGGAATCGCCGTGGACATAAGGCGAAAGGTTCAGCG
CCCCAGCCCGACGTTGAACCGGCGAAAAAATGTTTAGTGGACCAGAGCTT
GCGGCGTCCAGAGTCGGACAAAGTCTGGAACCCTAAGCAAAGGAAGAGAA
CGTTTCTGCCCTGCCCGTGCGATGTATGCAAGGGCTCATACGCACACGTG
GAGGATGGTGATAGTTAGCCTGTACTGCCGGGTCGAAAAGAGCTGGACAC
ACGTAAAAAAAAGTAAATATTTGCCTACCGGTTCGAAAGGCCGTTCGGTC
AGTTAAGAGTGCACTAATTGTACGGCAGTCGCCCAGAATTTCGGATGGTA
AAGGAAACTAACAAACCGCCCACGATTGAGACATCAGATACACCACGGCT
GCCCAGGCGATGTGTGTGTGTGTGTGTG
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Coding sequence (CDS) from alignment at Scaffold_255:179324..180501-

>EsuBft336_10a-0001 ID=EsuBft336_10a-0001|Name=EsuBft336_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_255:179324..180501- (Ectocarpus subulatus male Bft15b)
ATGCTCAACGACTATGGCGTGAAAATGGCGAGCACGGTGGACCTGCGTGT
CCTCGCCGTTTCCAAGGACGCCGTTGCCTCGGCACTCTTGTACGAGGCCA
TCCACAAGAACAAGGACCCGACCACGTCCGTGCCTTCTTCACCGTTCGAC
CCGGCTATCGGCTTGAAGGTGCGCCTCTACAACGCCAGCCATTCCGCCTG
CGTGGCGGTAGGTCACGTGGTGTCCGACGCCACCGCGGAGGCCGCCCTTC
GTCACTGGCAAAGTTCTGCCAAGCTACAAGGGGGTGACCCGGTAGAGGGG
TCGCCGATCTTGGCTGCGCCTGGGGCGGGGGCGGCGGGGGCGGCGCGGGC
GGCGCGGGCGGCGTTGCCGCAGTTCAGGGCCTGCACCGAATGCGGACACC
ACAAGGGTGCATACCCTGCTAAACACCCTGGGAATCGCCGTGGACATAAG
GCGAAAGGTTCAGCGCCCCAGCCCGACGTTGAACCGGCGAAAAAATGTTT
AGTGGACCAGAGCTTGCGGCGTCCAGAGTCGGACAAAGTCTGGAACCCTA
AGCAAAGGAAGAGAACGTTTCTGCCCTGCCCGTGCGATGTATGCAAGGGC
TCATACGCACACGTGGAGGATGGTGATAGTTAG
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